Rw3G008980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015818
Physical Location & Seq
Forward (+)
8398156 .. 8398925
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008980.1

Sequence Viewer

Length: 723 bp
ATGGTTAAACTTTTAAAGTCAACAATAGAGTTGTACGAGTTAATTAACCTATATATGAACATAACTTGTTTGTTTGCTGACTTCAACTACTTCAGTGTGTTGCGCACTTTATTTAAATCCCAAACCAAAGAAAAGCCAACCCAATATTGCCTCTCCTACTTCCTCACCTCCTCTCTCACTTCAGACCAAAACCGTCCAAAATGTTCAGATGACAAGTTCTTCTCTAGGGTTCTGTCCAGGGAAAGCTCCATGGCCAACCCATCTTTCAAGGTCTACTATGGAGGACTACCTGCTAATGTACCATTCATGTGGGAATCTCAGCCTGGTACTCCTAAACACAAATTCAGTGAAGAAACACTTCCTCCTCTTACTCCTCCACCTTCTTATTATTCCAACAATCCCAATAAAAAACCATTCAAGAAGCACTCAAGATCCAATCTTTTACGTGTTTTGTTCCTAAAGATAAGCCTCAAGAAAAACCATCTCCCACAATCTCCATCATCCACATCGTCTTCCTCGTCTTCGTTGTTTTCCAAGTCAGATTTGTCAATGCGCGTGCCTATGAATACCTGTGGGAGCAGGTTTTCGAGCCCGAGTTCATCTTTTGATTTTAGCGGAGATTATGAAGAGGAGGGCGTAGTTGGCTCGCCTACTTCAACATTGTGCTTTGGATTTCGTAGGGTGACTAGTACTGGAGCCGACCGAAATTGTCACCGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

240

Amino Acids

27.18

Weight (kDa)

9.48

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01790
fragaria_vesca FvH4_6g10240
prunus_persica Prupe.1G085100_v2.0.a1 Prupe.6G289800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460991
rosa_laevigata RLG00000024961
rosa_multiflora Rmu_sc0006670.1_g000005 Rmu_sc0007017.1_g000005
rosa_roxburghii Rroxscaffold_6G00418970
rosa_rugosa Rorug03G0047600
rosa_samantha Rh3AG105000 Rh3BG108800 Rh3CG110300 Rh3DG110500
rosa_wichuraiana Rw3G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 298, 570
AccI GTMKAC 1 cut(s) 273
AccII CGCG 1 cut(s) 555
AciI CCGC 1 cut(s) 615
AclWI GGATC 1 cut(s) 426
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 76, 165
AfaI GTAC 4 cut(s) 35, 300, 328, 691
AflIII ACRYGT 1 cut(s) 445
AgeI ACCGGT 1 cut(s) 714
AgsI TTSAA 4 cut(s) 85, 268, 418, 657
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 2 cut(s) 236, 322
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
AlwI GGATC 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 341
AsiGI ACCGGT 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 2 cut(s) 105, 555
AsuHPI GGTGA 3 cut(s) 157, 694, 704
AvaI CYCGRG 1 cut(s) 592
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 593
BbsI GAAGAC 2 cut(s) 504, 513
BccI CCATC 3 cut(s) 268, 489, 505
BciT130I CCWGG 2 cut(s) 238, 324
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 2 cut(s) 225, 687
BfuAI ACCTGC 2 cut(s) 298, 570
BmcAI AGTACT 1 cut(s) 691
Bme1390I CCNGG 2 cut(s) 238, 324
BmeT110I CYCGRG 1 cut(s) 592
BmiI GGNNCC 1 cut(s) 697
BmrFI CCNGG 2 cut(s) 238, 324
BpiI GAAGAC 2 cut(s) 504, 513
BpmI CTGGAG 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 412, 455
BsaAI YACGTR 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 237, 249
BsaWI WCCGGW 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse118I RCCGGY 1 cut(s) 714
Bse1I ACTGG 1 cut(s) 697
BseBI CCWGG 2 cut(s) 238, 324
BseDI CCNNGG 2 cut(s) 237, 249
BseGI GGATG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 697
BseRI GAGGAG 4 cut(s) 160, 354, 363, 644
Bsh1236I CGCG 1 cut(s) 555
Bsh1285I CGRYCG 1 cut(s) 703
BshFI GGCC 1 cut(s) 254
BshTI ACCGGT 1 cut(s) 714
BsiEI CGRYCG 1 cut(s) 703
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 1 cut(s) 715
BsnI GGCC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 1 cut(s) 431
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 1 cut(s) 615
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 697
BspMI ACCTGC 2 cut(s) 298, 570
BspPI GGATC 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 714
BsrI ACTGG 1 cut(s) 697
BssAI RCCGGY 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 237, 249
BssMI GATC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 238, 324
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 621
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 557, 647
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 500
BstFNI CGCG 1 cut(s) 555
BstHHI GCGC 2 cut(s) 105, 555
BstKTI GATC 1 cut(s) 434
BstMBI GATC 1 cut(s) 431
BstMCI CGRYCG 1 cut(s) 703
BstMWI GCNNNNNNNGC 1 cut(s) 642
BstNI CCWGG 2 cut(s) 238, 324
BstSCI CCNGG 2 cut(s) 236, 322
BstUI CGCG 1 cut(s) 555
BstV2I GAAGAC 2 cut(s) 504, 513
BstX2I RGATCY 1 cut(s) 431
BstXI CCANNNNNNTGG 1 cut(s) 309
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 100, 352
BveI ACCTGC 2 cut(s) 298, 570
Cac8I GCNNGC 2 cut(s) 557, 647
CfoI GCGC 2 cut(s) 105, 555
Cfr10I RCCGGY 1 cut(s) 714
Csp6I GTAC 4 cut(s) 34, 299, 327, 690
CspAI ACCGGT 1 cut(s) 714
CviAII CATG 2 cut(s) 250, 307
CviJI RGCY 8 cut(s) 136, 246, 254, 322, 468, 591, 645, 698
CviKI_1 RGCY 8 cut(s) 136, 246, 254, 322, 468, 591, 645, 698
CviQI GTAC 4 cut(s) 34, 299, 327, 690
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
DraI TTTAAA 2 cut(s) 15, 115
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 593
Eco57I CTGAAG 2 cut(s) 76, 165
Eco88I CYCGRG 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 236, 322
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 253, 310
FaiI YATR 9 cut(s) 52, 54, 56, 62, 251, 279, 308, 563, 624
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 2 cut(s) 249, 306
FblI GTMKAC 1 cut(s) 273
FokI GGATG 1 cut(s) 487
FriOI GRGCYC 1 cut(s) 593
FspBI CTAG 2 cut(s) 225, 687
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 2 cut(s) 104, 554
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 715
HhaI GCGC 2 cut(s) 105, 555
Hin1II CATG 2 cut(s) 253, 310
Hin6I GCGC 2 cut(s) 103, 553
HinP1I GCGC 2 cut(s) 103, 553
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 715
HphI GGTGA 3 cut(s) 157, 694, 704
Hpy166II GTNNAC 2 cut(s) 21, 274
Hpy188I TCNGA 3 cut(s) 184, 208, 541
Hpy188III TCNNGA 3 cut(s) 418, 429, 472
Hpy8I GTNNAC 2 cut(s) 21, 274
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 642
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 2 cut(s) 253, 310
HspAI GCGC 2 cut(s) 103, 553
Kzo9I GATC 1 cut(s) 431
LmnI GCTCC 3 cut(s) 251, 576, 695
LpnPI CCDG 8 cut(s) 223, 250, 303, 309, 336, 565, 583, 678
MaeI CTAG 2 cut(s) 225, 687
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 2 cut(s) 682, 710
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 5 cut(s) 211, 362, 504, 513, 638
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 593
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 42, 341, 706
MluNI TGGCCA 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 417
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 357
MscI TGGCCA 1 cut(s) 254
MseI TTAA 5 cut(s) 6, 14, 41, 45, 114
MslI CAYNNNNRTG 1 cut(s) 307
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 1 cut(s) 715
MspR9I CCNGG 2 cut(s) 238, 324
MvaI CCWGG 2 cut(s) 238, 324
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 642
NcoI CCATGG 1 cut(s) 249
NdeII GATC 1 cut(s) 431
NlaIII CATG 2 cut(s) 253, 310
NlaIV GGNNCC 1 cut(s) 697
NmuCI GTSAC 2 cut(s) 682, 710
NsbI TGCGCA 1 cut(s) 104
PacI TTAATTAA 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 314
PinAI ACCGGT 1 cut(s) 714
Ppu21I YACGTR 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 236, 322
PspGI CCWGG 2 cut(s) 236, 322
PspN4I GGNNCC 1 cut(s) 697
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 4 cut(s) 35, 300, 328, 691
RsaNI GTAC 4 cut(s) 34, 299, 327, 690
RseI CAYNNNNRTG 1 cut(s) 307
SaqAI TTAA 5 cut(s) 6, 14, 41, 45, 114
Sau3AI GATC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 691
ScrFI CCNGG 2 cut(s) 238, 324
SduI GDGCHC 1 cut(s) 593
SetI ASST 9 cut(s) 51, 170, 248, 273, 292, 382, 448, 572, 584
SmiI ATTTAAAT 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 307
SmlI CTYRAG 2 cut(s) 427, 470
SmoI CTYRAG 2 cut(s) 427, 470
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 3 cut(s) 42, 341, 706
SsiI CCGC 1 cut(s) 615
SspI AATATT 1 cut(s) 146
SspMI CTAG 2 cut(s) 225, 687
StyD4I CCNGG 2 cut(s) 236, 322
StyI CCWWGG 1 cut(s) 249
SwaI ATTTAAAT 1 cut(s) 115
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 448
TaqI TCGA 1 cut(s) 587
TaqII GACCGA 1 cut(s) 717
TasI AATT 3 cut(s) 42, 341, 706
TatI WGTACW 1 cut(s) 689
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 5 cut(s) 6, 14, 41, 45, 114
Tru9I TTAA 5 cut(s) 6, 14, 41, 45, 114
TscAI CASTG 2 cut(s) 100, 352
TseFI GTSAC 2 cut(s) 682, 710
Tsp45I GTSAC 2 cut(s) 682, 710
TspDTI ATGAA 5 cut(s) 71, 295, 578, 588, 639
TspRI CASTG 2 cut(s) 100, 352
XapI RAATTY 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 2 cut(s) 225, 687
ZrmI AGTACT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.