FvH4_6g10240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015818
Physical Location & Seq
Forward (+)
6086913 .. 6088000
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10240.t1

Sequence Viewer

Length: 576 bp
ATGTTCAGCTCCAACCATCAGCTTCCCCAGAAGTCTCTCCCAATGAAACAAGAGGATGCCAAGTTCTTCTCTAGGGTTTTGTCCAAGGAGAGCTCCTTGGCCAACCCATCTTTCAAGGTCTACTATGGAGTGTCACCTGCTAATGTACCATTCATGTGGGAATCTCAGCCTGGTACTCCTAAACACAAGTTCAGTGAAGAAACACTTCCTCCTCTTACTCCTCCACCTTCTTATTTTTCCAACAATCCCAACAAAAAGCCATTCAAGAAGCACTCAGGATCCAATCTTTTACGTATCTTGTTCCTAAAGATAAGCCTCAAGAAAAAACAATATTTCCCGCAGTCTCCATCATCCACATCGTCGACTTCGTCTTCTTCCTTGCTTTCCAAGTCGGATTTGTCCGTGCGTGTGCCTATGAACACCTGCCGGAGCAGGTTTTCGAGCTCGAGCTCATCCTTTGATTCTAGGGGAGATTATGAAGAGGAAGGAGTAGTCGGCTCACCTACTTCAACATTGTGCTTTGGAATTCGTAGGGTGACTAGGGGAGGAGCCAACAGAGATGTTCACCGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

192

Amino Acids

21.33

Weight (kDa)

10.05

Isoelectric Point (pI)

68.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01790
fragaria_vesca FvH4_6g10240
prunus_persica Prupe.1G085100_v2.0.a1 Prupe.6G289800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460991
rosa_laevigata RLG00000024961
rosa_multiflora Rmu_sc0006670.1_g000005 Rmu_sc0007017.1_g000005
rosa_roxburghii Rroxscaffold_6G00418970
rosa_rugosa Rorug03G0047600
rosa_samantha Rh3AG105000 Rh3BG108800 Rh3CG110300 Rh3DG110500
rosa_wichuraiana Rw3G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 145, 431
Acc36I ACCTGC 3 cut(s) 145, 423, 431
AccI GTMKAC 2 cut(s) 120, 362
AciI CCGC 1 cut(s) 338
AclWI GGATC 2 cut(s) 273, 286
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 525
AfaI GTAC 2 cut(s) 147, 175
AgeI ACCGGT 1 cut(s) 567
AgsI TTSAA 3 cut(s) 115, 265, 510
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 5 cut(s) 9, 22, 93, 444, 450
AluI AGCT 5 cut(s) 9, 22, 93, 444, 450
Alw21I GWGCWC 3 cut(s) 95, 446, 452
Alw26I GTCTC 2 cut(s) 39, 348
AlwI GGATC 2 cut(s) 273, 286
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 525
AsiGI ACCGGT 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 204
AsuHPI GGTGA 4 cut(s) 126, 492, 547, 557
AvaI CYCGRG 1 cut(s) 445
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 278
BanII GRGCYC 3 cut(s) 95, 446, 452
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 3 cut(s) 95, 446, 452
BccI CCATC 3 cut(s) 24, 115, 355
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 39, 348
BfaI CTAG 3 cut(s) 72, 465, 540
BfuAI ACCTGC 3 cut(s) 145, 423, 431
Bme1390I CCNGG 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 280, 550
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 84, 96
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bse118I RCCGGY 1 cut(s) 567
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 84, 96
BseGI GGATG 3 cut(s) 61, 350, 452
BseMII CTCAG 2 cut(s) 179, 288
BseRI GAGGAG 3 cut(s) 201, 210, 561
BshFI GGCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 567
BsiHKAI GWGCWC 3 cut(s) 95, 446, 452
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 2 cut(s) 427, 568
BsmAI GTCTC 2 cut(s) 39, 348
BsnI GGCC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 3 cut(s) 95, 446, 452
Bsp143I GATC 1 cut(s) 278
BspACI CCGC 1 cut(s) 338
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 178, 287
BspLI GGNNCC 2 cut(s) 280, 550
BspMI ACCTGC 3 cut(s) 145, 423, 431
BspPI GGATC 2 cut(s) 273, 286
BsrFI RCCGGY 1 cut(s) 567
BssAI RCCGGY 1 cut(s) 567
BssECI CCNNGG 2 cut(s) 84, 96
BssMI GATC 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 84, 96
Bst2UI CCWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 165, 274
BstF5I GGATG 3 cut(s) 61, 350, 452
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 2 cut(s) 39, 348
BstMBI GATC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSNI TACGTA 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 156
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 61, 350, 452
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 3 cut(s) 145, 423, 431
Cfr10I RCCGGY 1 cut(s) 567
Csp6I GTAC 2 cut(s) 146, 174
CspAI ACCGGT 1 cut(s) 567
CviAII CATG 1 cut(s) 154
CviQI GTAC 2 cut(s) 146, 174
DdeI CTNAG 2 cut(s) 165, 274
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 3 cut(s) 93, 444, 450
Eco105I TACGTA 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 84, 96
Eco24I GRGCYC 3 cut(s) 95, 446, 452
Eco53kI GAGCTC 3 cut(s) 93, 444, 450
Eco88I CYCGRG 1 cut(s) 445
EcoICRI GAGCTC 3 cut(s) 93, 444, 450
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 84, 96
EcoT38I GRGCYC 3 cut(s) 95, 446, 452
ErhI CCWWGG 2 cut(s) 84, 96
FaeI CATG 1 cut(s) 157
FaiI YATR 4 cut(s) 126, 155, 416, 477
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 345
FblI GTMKAC 2 cut(s) 120, 362
FokI GGATG 3 cut(s) 68, 337, 439
FriOI GRGCYC 3 cut(s) 95, 446, 452
FspBI CTAG 3 cut(s) 72, 465, 540
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 427, 568
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 2 cut(s) 161, 461
HpaII CCGG 2 cut(s) 427, 568
HphI GGTGA 4 cut(s) 126, 492, 547, 557
Hpy166II GTNNAC 3 cut(s) 121, 363, 565
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 3 cut(s) 265, 276, 319
Hpy8I GTNNAC 3 cut(s) 121, 363, 565
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 237, 479
HpyCH4IV ACGT 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 165, 274
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 4 cut(s) 14, 98, 429, 548
LpnPI CCDG 8 cut(s) 41, 150, 156, 183, 261, 418, 436, 440
LweI GCATC 1 cut(s) 46
MaeI CTAG 3 cut(s) 72, 465, 540
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 132, 535
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 5 cut(s) 58, 209, 363, 366, 491
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 3 cut(s) 95, 446, 452
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 1 cut(s) 525
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 3 cut(s) 36, 264, 372
MnlI CCTC 7 cut(s) 46, 219, 222, 231, 326, 475, 539
Mox20I TGGCCA 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 154
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 2 cut(s) 427, 568
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
NdeII GATC 1 cut(s) 278
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 2 cut(s) 280, 550
NmuCI GTSAC 2 cut(s) 132, 535
PaeR7I CTCGAG 1 cut(s) 445
PaqCI CACCTGC 2 cut(s) 145, 431
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 161, 461
PflFI GACNNNGTC 1 cut(s) 367
PinAI ACCGGT 1 cut(s) 567
Ppu21I YACGTR 1 cut(s) 293
Psp124BI GAGCTC 3 cut(s) 95, 446, 452
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 280, 550
PspXI VCTCGAGB 1 cut(s) 445
PsuI RGATCY 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 367
RsaI GTAC 2 cut(s) 147, 175
RsaNI GTAC 2 cut(s) 146, 174
RseI CAYNNNNRTG 1 cut(s) 154
SacI GAGCTC 3 cut(s) 95, 446, 452
SalI GTCGAC 1 cut(s) 361
Sau3AI GATC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 3 cut(s) 95, 446, 452
SfaNI GCATC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 317, 445
SmoI CTYRAG 2 cut(s) 317, 445
SnaBI TACGTA 1 cut(s) 293
Sse9I AATT 1 cut(s) 525
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 332
SspMI CTAG 3 cut(s) 72, 465, 540
SstI GAGCTC 3 cut(s) 95, 446, 452
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 2 cut(s) 84, 96
TaiI ACGT 1 cut(s) 295
TaqI TCGA 3 cut(s) 362, 440, 446
TasI AATT 1 cut(s) 525
TfiI GAWTC 2 cut(s) 161, 461
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 132, 535
Tsp45I GTSAC 2 cut(s) 132, 535
TspDTI ATGAA 4 cut(s) 59, 142, 431, 492
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 367
XapI RAATTY 1 cut(s) 525
XhoI CTCGAG 1 cut(s) 445
XmiI GTMKAC 2 cut(s) 120, 362
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 3 cut(s) 72, 465, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.