AT5G02710

Putative zinc- or iron-chelating domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015510
Physical Location & Seq
Forward (+)
612463 .. 614562
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02710.2

Sequence Viewer

Length: 531 bp
ATGGATATGTCGCTTGCGTTATCGACGGCACCAATGAGTAGGACGATTATCTCTGCCACGAGGCGGTCCCAAGTTTCACAACCTAAAGCTAAGAAAGTCAAGCCGGCGAATAAGCGGCCAACGATGTCGACAAGCGGTTTCTCCGGCGGAACGACAAAGGAGTTGACTTGGAAGTGCGTAGAAGGTTGTGGAGCTTGCTGTAAGATTGCAAAGGACTTTTCCTTTGCAACACCTGACGAAATCTTCGACAACCCTGATGATGTTGAGCTGTATCGAAGCATGATCGGAGATGATGGATGGTGTCTAAACTACGACAAAGCTACACGCAAATGCTCTATTTATGCTGATCGTCCATATTTTTGTCGGGTTGAGCCAGAGGTTTTCAAGTCACTCTACGGGATTGAAGAAAAGAAATTCAACAAGGAAGCTGTCAGCTGCTGCATTGACACAATTAAGACGATATACGGCCCTGATTCCAAAGAATTGGATAGCTTCAACCGTGCCATCAGAAGTAATCCGAGCTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CxxCxxCC

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

8.53

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CxxCxxCC PF03692 58 - 147 4.6e-14 Putative zinc- or iron-chelating domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02710 AT5G02710 AT5G02710
fragaria_vesca FvH4_6g14780 FvH4_6g14780
malus_domestica MD12G1131600.v1.1
prunus_persica Prupe.6G246000_v2.0.a1
pyrus_communis pycom12g12740
rosa_chinensis RchiOBHm_Chr3g0468011
rosa_laevigata RLG00000024460
rosa_multiflora Rmu_sc0006706.1_g000006
rosa_roxburghii Rroxscaffold_6G00413210
rosa_rugosa Rorug03G0091300 Rorug03G0091400
rosa_samantha Rh3BG161300
rosa_wichuraiana Rw3G013230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 128
AciI CCGC 4 cut(s) 64, 115, 135, 147
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 4 cut(s) 385, 404, 418, 496
AluBI AGCT 8 cut(s) 89, 194, 268, 320, 428, 435, 492, 522
AluI AGCT 8 cut(s) 89, 194, 268, 320, 428, 435, 492, 522
Alw21I GWGCWC 1 cut(s) 524
AlwNI CAGNNNCTG 1 cut(s) 438
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 2 cut(s) 116, 466
ApeKI GCWGC 2 cut(s) 435, 438
ApoI RAATTY 1 cut(s) 413
ArsI GACNNNNNNTTYG 4 cut(s) 206, 227, 238, 259
AspS9I GGNCC 2 cut(s) 66, 467
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 524
BauI CACGAG 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 422, 425
BccI CCATC 3 cut(s) 287, 291, 512
BceAI ACGGC 2 cut(s) 42, 481
BisI GCNGC 3 cut(s) 116, 436, 439
BlsI GCNGC 3 cut(s) 117, 437, 440
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 66, 467
BmiI GGNNCC 2 cut(s) 30, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 103
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 422, 425
BshFI GGCC 2 cut(s) 118, 468
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 2 cut(s) 104, 144
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 2 cut(s) 118, 468
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 282, 346
BspACI CCGC 4 cut(s) 64, 115, 135, 147
BspANI GGCC 2 cut(s) 118, 468
BspLI GGNNCC 2 cut(s) 30, 68
BspT107I GGYRCC 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 2 cut(s) 282, 346
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 500
BstC8I GCNNGC 3 cut(s) 15, 105, 196
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 2 cut(s) 285, 349
BstMBI GATC 2 cut(s) 282, 346
BstV1I GCAGC 2 cut(s) 422, 425
BstXI CCANNNNNNTGG 1 cut(s) 484
BsuRI GGCC 2 cut(s) 118, 468
BtsCI GGATG 1 cut(s) 302
Cac8I GCNNGC 3 cut(s) 15, 105, 196
CaiI CAGNNNCTG 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 66, 467
CviAII CATG 1 cut(s) 280
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 284, 348
DpnII GATC 2 cut(s) 282, 346
EaeI YGGCCR 1 cut(s) 116
EciI GGCGGA 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 524
FaeI CATG 1 cut(s) 283
FaiI YATR 5 cut(s) 8, 281, 342, 355, 463
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 116, 436, 439
FokI GGATG 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 3 cut(s) 116, 436, 439
GluI GCNGC 3 cut(s) 116, 436, 439
HaeIII GGCC 2 cut(s) 118, 468
HapII CCGG 2 cut(s) 104, 144
Hin1II CATG 1 cut(s) 283
HincII GTYRAC 2 cut(s) 129, 165
HindII GTYRAC 2 cut(s) 129, 165
HinfI GANTC 1 cut(s) 473
HpaII CCGG 2 cut(s) 104, 144
Hpy166II GTNNAC 2 cut(s) 129, 165
Hpy188I TCNGA 3 cut(s) 287, 509, 519
Hpy8I GTNNAC 2 cut(s) 129, 165
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 500
HpyCH4V TGCA 3 cut(s) 209, 227, 441
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 283
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 282, 346
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 6 cut(s) 117, 157, 246, 267, 387, 483
Lsp1109I GCAGC 2 cut(s) 422, 425
MaeIII GTNAC 1 cut(s) 387
MalI GATC 2 cut(s) 284, 348
MboI GATC 2 cut(s) 282, 346
MboII GAAGA 2 cut(s) 235, 416
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 3 cut(s) 413, 450, 482
MnlI CCTC 2 cut(s) 54, 370
MroNI GCCGGC 1 cut(s) 103
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 1 cut(s) 328
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 2 cut(s) 104, 144
NaeI GCCGGC 1 cut(s) 105
NdeII GATC 2 cut(s) 282, 346
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 2 cut(s) 30, 68
NmuCI GTSAC 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 523
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 3 cut(s) 117, 437, 440
Psp124BI GAGCTC 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 30, 68
PspPI GGNCC 2 cut(s) 66, 467
PspXI VCTCGAGB 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 328
SacI GAGCTC 1 cut(s) 524
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 116, 436, 439
Sau3AI GATC 2 cut(s) 282, 346
Sau96I GGNCC 2 cut(s) 66, 467
SduI GDGCHC 1 cut(s) 524
Sfr274I CTCGAG 1 cut(s) 523
SinI GGWCC 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 3 cut(s) 413, 450, 482
SsiI CCGC 4 cut(s) 64, 115, 135, 147
SstI GAGCTC 1 cut(s) 524
TaaI ACNGT 1 cut(s) 500
TaqI TCGA 5 cut(s) 23, 128, 246, 274, 524
TasI AATT 3 cut(s) 413, 450, 482
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseFI GTSAC 1 cut(s) 387
TseI GCWGC 2 cut(s) 435, 438
Tsp45I GTSAC 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 413
XhoI CTCGAG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.