FvH4_6g14780

Putative zinc- or iron-chelating domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015510
Physical Location & Seq
Forward (+)
9180125 .. 9181434
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14780.t1

Sequence Viewer

Length: 495 bp
ATGTCTAACGCACTGACTCTGCCGTGTCTCGGCATAGTCAGCATGGCGCGCCGCCCAAAACGCACGGCAAAGACTAAGCAAGCTCCACCCCCGACGACCGTCGGCTTCGGAATGGGCAAGAGGAAGGACCCGCTCTGGCAATGCGTGGAAGGTTGCGGAGCTTGCTGCAAACTCGTCAAGGGTCCCTCTTTCGCTACCCCTGAAGAAATCTTCACTGACCCTGCTGACGTTGAGCTATACAAAAGTATGGTGGGTTCAGATGGGTGGTGCGTGCACTTTGAGAAGAGCTCACGCAAGTGCTCCATTTACAATGAGCGTCCATATTTTTGTCGTGTGGAGGCAGACGTGTTTGACAAATTGTATGGGATTAGCAAGAAGAAATTCAATGTGGAAGCTTGCAGGAGCTGCACGGATACCATCAAGTCTGTTTACGGTCCCTATTCCAAAGAACTCGTTAACTATAATAGCACAGTAATGAGCTCCAGTACTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CxxCxxCC

Protein Analysis

165

Amino Acids

18.17

Weight (kDa)

8.99

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CxxCxxCC PF03692 47 - 135 9.2e-11 Putative zinc- or iron-chelating domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02710 AT5G02710 AT5G02710
fragaria_vesca FvH4_6g14780 FvH4_6g14780
malus_domestica MD12G1131600.v1.1
prunus_persica Prupe.6G246000_v2.0.a1
pyrus_communis pycom12g12740
rosa_chinensis RchiOBHm_Chr3g0468011
rosa_laevigata RLG00000024460
rosa_multiflora Rmu_sc0006706.1_g000006
rosa_roxburghii Rroxscaffold_6G00413210
rosa_rugosa Rorug03G0091300 Rorug03G0091400
rosa_samantha Rh3BG161300
rosa_wichuraiana Rw3G013230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 133
AccII CGCG 1 cut(s) 49
AciI CCGC 3 cut(s) 52, 131, 156
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 1 cut(s) 385
AhlI ACTAGT 1 cut(s) 488
AjiI CACGTC 1 cut(s) 346
AleI CACNNNNGTG 1 cut(s) 295
AluBI AGCT 7 cut(s) 83, 161, 235, 288, 395, 405, 480
AluI AGCT 7 cut(s) 83, 161, 235, 288, 395, 405, 480
Alw21I GWGCWC 4 cut(s) 276, 290, 302, 482
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 405
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 165, 405
ApoI RAATTY 1 cut(s) 380
AscI GGCGCGCC 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 49, 51
AspS9I GGNCC 3 cut(s) 127, 182, 434
AvaII GGWCC 3 cut(s) 127, 182, 434
BaeGI GKGCMC 1 cut(s) 276
BanII GRGCYC 2 cut(s) 290, 482
Bbv12I GWGCWC 4 cut(s) 276, 290, 302, 482
BbvI GCAGC 2 cut(s) 152, 392
BccI CCATC 2 cut(s) 254, 425
BceAI ACGGC 2 cut(s) 7, 81
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 32
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 1 cut(s) 489
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 3 cut(s) 52, 166, 406
BlsI GCNGC 3 cut(s) 53, 167, 407
BmcAI AGTACT 1 cut(s) 487
Bme18I GGWCC 3 cut(s) 127, 182, 434
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 127, 182, 434
BmiI GGNNCC 4 cut(s) 129, 183, 184, 436
BoxI GACNNNNGTC 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 483
BsePI GCGCGC 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 2 cut(s) 152, 392
BsgI GTGCAG 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 4 cut(s) 276, 290, 302, 482
BslFI GGGAC 2 cut(s) 168, 420
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 168, 420
Bsp1286I GDGCHC 4 cut(s) 276, 290, 302, 482
BspACI CCGC 3 cut(s) 52, 131, 156
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 4 cut(s) 129, 183, 184, 436
BspQI GCTCTTC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 483
BssHII GCGCGC 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 100, 434, 472
Bst6I CTCTTC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 405
BstC8I GCNNGC 5 cut(s) 49, 81, 163, 272, 397
BstDEI CTNAG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 2 cut(s) 49, 51
BstMAI GTCTC 1 cut(s) 32
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 5 cut(s) 39, 48, 60, 162, 405
BstPAI GACNNNNGTC 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 276
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 152, 392
BsuI GTATCC 1 cut(s) 406
BtrI CACGTC 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 11, 213
Cac8I GCNNGC 5 cut(s) 49, 81, 163, 272, 397
CaiI CAGNNNCTG 1 cut(s) 405
CfoI GCGC 2 cut(s) 49, 51
Cfr13I GGNCC 3 cut(s) 127, 182, 434
CseI GACGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 486
CviAII CATG 1 cut(s) 43
CviJI RGCY 8 cut(s) 83, 105, 161, 235, 288, 395, 405, 480
CviKI_1 RGCY 8 cut(s) 83, 105, 161, 235, 288, 395, 405, 480
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Ecl136II GAGCTC 2 cut(s) 288, 480
Eco24I GRGCYC 2 cut(s) 290, 482
Eco47I GGWCC 3 cut(s) 127, 182, 434
Eco53kI GAGCTC 2 cut(s) 288, 480
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 2 cut(s) 288, 480
EcoO109I RGGNCCY 2 cut(s) 127, 182
EcoT38I GRGCYC 2 cut(s) 290, 482
FaeI CATG 1 cut(s) 46
FaiI YATR 7 cut(s) 35, 44, 238, 248, 322, 363, 462
FaqI GGGAC 2 cut(s) 168, 420
FatI CATG 1 cut(s) 42
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 52, 166, 406
FriOI GRGCYC 2 cut(s) 290, 482
Fsp4HI GCNGC 3 cut(s) 52, 166, 406
FspBI CTAG 1 cut(s) 489
GlaI GCGC 2 cut(s) 48, 50
GluI GCNGC 3 cut(s) 52, 166, 406
GsuI CTGGAG 1 cut(s) 466
HgaI GACGC 1 cut(s) 305
HhaI GCGC 2 cut(s) 49, 51
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 2 cut(s) 47, 49
HinP1I GCGC 2 cut(s) 47, 49
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 1 cut(s) 16
HpaI GTTAAC 1 cut(s) 457
Hpy166II GTNNAC 3 cut(s) 274, 430, 457
Hpy188I TCNGA 2 cut(s) 110, 259
Hpy8I GTNNAC 3 cut(s) 274, 430, 457
Hpy99I CGWCG 2 cut(s) 97, 104
HpyAV CCTTC 2 cut(s) 118, 143
HpyCH4III ACNGT 3 cut(s) 100, 434, 472
HpyCH4IV ACGT 2 cut(s) 228, 345
HpyCH4V TGCA 4 cut(s) 168, 274, 399, 408
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 48, 60, 162, 405
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 228, 345
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 2 cut(s) 47, 49
KflI GGGWCCC 1 cut(s) 182
KspAI GTTAAC 1 cut(s) 457
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 5 cut(s) 88, 158, 305, 402, 485
LpnPI CCDG 4 cut(s) 121, 213, 234, 385
Lsp1109I GCAGC 2 cut(s) 152, 392
MaeI CTAG 1 cut(s) 489
MaeII ACGT 2 cut(s) 228, 345
MbiI CCGCTC 1 cut(s) 133
MboII GAAGA 4 cut(s) 202, 215, 295, 388
MhlI GDGCHC 4 cut(s) 276, 290, 302, 482
MluCI AATT 2 cut(s) 356, 380
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 3 cut(s) 114, 196, 331
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 2 cut(s) 456, 493
MslI CAYNNNNRTG 2 cut(s) 295, 473
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 5 cut(s) 39, 48, 60, 162, 405
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 4 cut(s) 129, 183, 184, 436
NmeAIII GCCGAG 1 cut(s) 9
OliI CACNNNNGTG 1 cut(s) 295
PalAI GGCGCGCC 1 cut(s) 47
PauI GCGCGC 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 380
PkrI GCNGC 3 cut(s) 53, 167, 407
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 2 cut(s) 127, 182
PshAI GACNNNNGTC 1 cut(s) 98
Psp124BI GAGCTC 2 cut(s) 290, 482
Psp5II RGGWCCY 2 cut(s) 127, 182
PspN4I GGNNCC 4 cut(s) 129, 183, 184, 436
PspPI GGNCC 3 cut(s) 127, 182, 434
PspPPI RGGWCCY 2 cut(s) 127, 182
PsrI GAACNNNNNNTAC 2 cut(s) 238, 270
PstNI CAGNNNCTG 1 cut(s) 405
PteI GCGCGC 1 cut(s) 47
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 2 cut(s) 295, 473
SacI GAGCTC 2 cut(s) 290, 482
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 456, 493
SatI GCNGC 3 cut(s) 52, 166, 406
Sau96I GGNCC 3 cut(s) 127, 182, 434
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 4 cut(s) 276, 290, 302, 482
SgsI GGCGCGCC 1 cut(s) 47
SinI GGWCC 3 cut(s) 127, 182, 434
SmiMI CAYNNNNRTG 2 cut(s) 295, 473
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 2 cut(s) 356, 380
SsiI CCGC 3 cut(s) 52, 131, 156
SspMI CTAG 1 cut(s) 489
SstI GAGCTC 2 cut(s) 290, 482
TaaI ACNGT 3 cut(s) 100, 434, 472
TaiI ACGT 2 cut(s) 231, 348
TasI AATT 2 cut(s) 356, 380
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 456, 493
Tru9I TTAA 2 cut(s) 456, 493
TscAI CASTG 2 cut(s) 18, 220
TseI GCWGC 2 cut(s) 165, 405
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 2 cut(s) 18, 220
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 3 cut(s) 127, 182, 434
XapI RAATTY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 1 cut(s) 489
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.