RLG00000024460

Putative zinc- or iron-chelating domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015510
Physical Location & Seq
Reverse (-)
36009519 .. 36010282
764 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024460

Sequence Viewer

Length: 495 bp
ATGTCTAACGCAGTGACTCTGCCGTGTCTCGGCATAGTCAGCATGGCGCGCCGCCCAAAAAGGACGGCAAAGACTAAGCAAATCCCACCGCCGACTAGCGTCGGCTTTGGAATGAGCAAGAGGAAGGAGCCGCTCTGGCAATGCGTGGAGGGTTGTGGAGCTTGCTGCAAACTCAACAAGGGTCCCTCTTTCGCTACCCCTGAAGAAATCTTCACCGACCCTGCTGACGTTGAGCTTTACAGAAGTATGGTGGGTTCTGATGGGTGGTGCGTGAACTTTGAGAAAAGCACACGCAAGTGCTCCATTTACAATGAGCGTCCATATTTTTGTCGCGTGGAGGCAGACGTGTTTGACAAACTGTATGGGATTAGGAAGAAGAAATTCAATGTGGAAGCTTGCAGGAGTTGCACGGACACCATCAAGTCTGTTTATGGTCCCTATTCCAAGGAACTGGGTCACTACAATAGCACAGTAATGAGCTCCAGTTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CxxCxxCC

Protein Analysis

165

Amino Acids

18.3

Weight (kDa)

9.1

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CxxCxxCC PF03692 47 - 134 8.1e-11 Putative zinc- or iron-chelating domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015510)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02710 AT5G02710 AT5G02710
fragaria_vesca FvH4_6g14780 FvH4_6g14780
malus_domestica MD12G1131600.v1.1
prunus_persica Prupe.6G246000_v2.0.a1
pyrus_communis pycom12g12740
rosa_chinensis RchiOBHm_Chr3g0468011
rosa_laevigata RLG00000024460
rosa_multiflora Rmu_sc0006706.1_g000006
rosa_roxburghii Rroxscaffold_6G00413210
rosa_rugosa Rorug03G0091300 Rorug03G0091400
rosa_samantha Rh3BG161300
rosa_wichuraiana Rw3G013230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 133
AccII CGCG 2 cut(s) 49, 333
AciI CCGC 3 cut(s) 52, 89, 131
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 1 cut(s) 385
AjiI CACGTC 1 cut(s) 346
AleI CACNNNNGTG 1 cut(s) 295
AluBI AGCT 4 cut(s) 161, 235, 395, 480
AluI AGCT 4 cut(s) 161, 235, 395, 480
Alw21I GWGCWC 2 cut(s) 302, 482
Alw26I GTCTC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 380
AscI GGCGCGCC 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 49, 51
AspS9I GGNCC 2 cut(s) 182, 434
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 2 cut(s) 182, 434
BanII GRGCYC 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 302, 482
BbvI GCAGC 1 cut(s) 152
BccI CCATC 2 cut(s) 254, 425
BceAI ACGGC 2 cut(s) 7, 81
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 96, 489
BglI GCCNNNNNGGC 1 cut(s) 136
BisI GCNGC 3 cut(s) 52, 131, 166
BlsI GCNGC 3 cut(s) 53, 132, 167
Bme18I GGWCC 2 cut(s) 182, 434
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 182, 434
BmiI GGNNCC 4 cut(s) 129, 183, 184, 436
BmrI ACTGGG 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 461
BoxI GACNNNNGTC 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 456, 483
Bse3DI GCAATG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 456, 483
BsePI GCGCGC 1 cut(s) 47
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 2 cut(s) 49, 333
BsiHKAI GWGCWC 2 cut(s) 302, 482
BslFI GGGAC 2 cut(s) 168, 420
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 168, 420
Bsp1286I GDGCHC 2 cut(s) 302, 482
BspACI CCGC 3 cut(s) 52, 89, 131
BspFNI CGCG 2 cut(s) 49, 333
BspLI GGNNCC 4 cut(s) 129, 183, 184, 436
BsrBI CCGCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 2 cut(s) 456, 483
BssECI CCNNGG 1 cut(s) 444
BssHII GCGCGC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 360, 472
BstAPI GCANNNNNTGC 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 49, 163, 397
BstDEI CTNAG 1 cut(s) 75
BstFNI CGCG 2 cut(s) 49, 333
BstHHI GCGC 2 cut(s) 49, 51
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 4 cut(s) 39, 48, 136, 405
BstPAI GACNNNNGTC 1 cut(s) 98
BstUI CGCG 2 cut(s) 49, 333
BstV1I GCAGC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 451
BtrI CACGTC 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 49, 163, 397
CfoI GCGC 2 cut(s) 49, 51
Cfr13I GGNCC 2 cut(s) 182, 434
CseI GACGC 2 cut(s) 88, 305
CviAII CATG 1 cut(s) 43
CviJI RGCY 6 cut(s) 105, 130, 161, 235, 395, 480
CviKI_1 RGCY 6 cut(s) 105, 130, 161, 235, 395, 480
DdeI CTNAG 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 482
Eco47I GGWCC 2 cut(s) 182, 434
Eco53kI GAGCTC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 480
EcoO109I RGGNCCY 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 1 cut(s) 46
FaiI YATR 6 cut(s) 35, 44, 248, 322, 363, 432
FaqI GGGAC 2 cut(s) 168, 420
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 52, 131, 166
FriOI GRGCYC 1 cut(s) 482
Fsp4HI GCNGC 3 cut(s) 52, 131, 166
FspBI CTAG 2 cut(s) 96, 489
GlaI GCGC 2 cut(s) 48, 50
GluI GCNGC 3 cut(s) 52, 131, 166
GsuI CTGGAG 1 cut(s) 466
HgaI GACGC 2 cut(s) 88, 305
HhaI GCGC 2 cut(s) 49, 51
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 2 cut(s) 47, 49
HinP1I GCGC 2 cut(s) 47, 49
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 360, 472
HpyCH4IV ACGT 2 cut(s) 228, 345
HpyCH4V TGCA 3 cut(s) 168, 399, 408
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 48, 136, 405
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 228, 345
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 2 cut(s) 47, 49
KflI GGGWCCC 1 cut(s) 182
LmnI GCTCC 4 cut(s) 127, 158, 305, 485
LpnPI CCDG 5 cut(s) 121, 213, 234, 385, 437
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 2 cut(s) 96, 489
MaeII ACGT 2 cut(s) 228, 345
MaeIII GTNAC 2 cut(s) 13, 455
MbiI CCGCTC 1 cut(s) 133
MboII GAAGA 4 cut(s) 202, 215, 385, 388
MhlI GDGCHC 2 cut(s) 302, 482
MluCI AATT 1 cut(s) 380
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 4 cut(s) 114, 142, 196, 331
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 1 cut(s) 493
MslI CAYNNNNRTG 2 cut(s) 295, 473
MvnI CGCG 2 cut(s) 49, 333
MwoI GCNNNNNNNGC 4 cut(s) 39, 48, 136, 405
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 4 cut(s) 129, 183, 184, 436
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 2 cut(s) 13, 455
OliI CACNNNNGTG 1 cut(s) 295
PalAI GGCGCGCC 1 cut(s) 47
PauI GCGCGC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 380
PkrI GCNGC 3 cut(s) 53, 132, 167
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 182
PshAI GACNNNNGTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 182
PspN4I GGNNCC 4 cut(s) 129, 183, 184, 436
PspPI GGNCC 2 cut(s) 182, 434
PspPPI RGGWCCY 1 cut(s) 182
PsrI GAACNNNNNNTAC 2 cut(s) 238, 270
PteI GCGCGC 1 cut(s) 47
RseI CAYNNNNRTG 2 cut(s) 295, 473
SacI GAGCTC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 493
SatI GCNGC 3 cut(s) 52, 131, 166
Sau96I GGNCC 2 cut(s) 182, 434
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 2 cut(s) 302, 482
SetI ASST 6 cut(s) 163, 231, 237, 348, 397, 482
SgsI GGCGCGCC 1 cut(s) 47
SinI GGWCC 2 cut(s) 182, 434
SmiMI CAYNNNNRTG 2 cut(s) 295, 473
Sse9I AATT 1 cut(s) 380
SsiI CCGC 3 cut(s) 52, 89, 131
SspMI CTAG 2 cut(s) 96, 489
SstI GAGCTC 1 cut(s) 482
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 360, 472
TaiI ACGT 2 cut(s) 231, 348
TasI AATT 1 cut(s) 380
TauI GCSGC 2 cut(s) 54, 133
Tru1I TTAA 1 cut(s) 493
Tru9I TTAA 1 cut(s) 493
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 13, 455
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 2 cut(s) 13, 455
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 2 cut(s) 182, 434
XapI RAATTY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 96, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.