E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03210 AT5G03210 |
| prunus_persica | Prupe.6G236900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0469561 RchiOBHm_Chr3g0469571 |
| rosa_multiflora | Rmu_sc0006483.1_g000004 |
| rosa_rugosa | Rorug03G0102600 |
| rosa_samantha | Rh3AG151900 Rh3DG199900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 141 |
| AflIII | ACRYGT | 1 cut(s) | 183 |
| AjiI | CACGTC | 1 cut(s) | 184 |
| Alw26I | GTCTC | 2 cut(s) | 119, 140 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 34 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| BccI | CCATC | 2 cut(s) | 58, 112 |
| BcoDI | GTCTC | 2 cut(s) | 119, 140 |
| BmgBI | CACGTC | 1 cut(s) | 184 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 1 cut(s) | 143 |
| BsaBI | GATNNNNATC | 1 cut(s) | 30 |
| BsaI | GGTCTC | 1 cut(s) | 140 |
| Bse8I | GATNNNNATC | 1 cut(s) | 30 |
| BseGI | GGATG | 2 cut(s) | 55, 69 |
| BseJI | GATNNNNATC | 1 cut(s) | 30 |
| BsiSI | CCGG | 1 cut(s) | 95 |
| BsmAI | GTCTC | 2 cut(s) | 119, 140 |
| BsmBI | CGTCTC | 1 cut(s) | 119 |
| Bso31I | GGTCTC | 1 cut(s) | 140 |
| Bsp143I | GATC | 1 cut(s) | 25 |
| BspACI | CCGC | 1 cut(s) | 141 |
| BspTNI | GGTCTC | 1 cut(s) | 140 |
| BssMI | GATC | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 1 cut(s) | 40 |
| BstF5I | GGATG | 2 cut(s) | 55, 69 |
| BstKTI | GATC | 1 cut(s) | 28 |
| BstMAI | GTCTC | 2 cut(s) | 119, 140 |
| BstMBI | GATC | 1 cut(s) | 25 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| BtrI | CACGTC | 1 cut(s) | 184 |
| BtsCI | GGATG | 2 cut(s) | 55, 69 |
| CaiI | CAGNNNCTG | 1 cut(s) | 34 |
| CviJI | RGCY | 2 cut(s) | 71, 103 |
| CviKI_1 | RGCY | 2 cut(s) | 71, 103 |
| DpnI | GATC | 1 cut(s) | 27 |
| DpnII | GATC | 1 cut(s) | 25 |
| EciI | GGCGGA | 1 cut(s) | 156 |
| Eco31I | GGTCTC | 1 cut(s) | 140 |
| Esp3I | CGTCTC | 1 cut(s) | 119 |
| FokI | GGATG | 2 cut(s) | 62, 76 |
| HapII | CCGG | 1 cut(s) | 95 |
| HinfI | GANTC | 2 cut(s) | 31, 118 |
| HpaII | CCGG | 1 cut(s) | 95 |
| Hpy188I | TCNGA | 3 cut(s) | 30, 36, 117 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 164 |
| HpyAV | CCTTC | 1 cut(s) | 131 |
| HpyCH4III | ACNGT | 1 cut(s) | 40 |
| HpyCH4IV | ACGT | 1 cut(s) | 183 |
| HpySE526I | ACGT | 1 cut(s) | 183 |
| Kzo9I | GATC | 1 cut(s) | 25 |
| LpnPI | CCDG | 1 cut(s) | 108 |
| MaeII | ACGT | 1 cut(s) | 183 |
| MalI | GATC | 1 cut(s) | 27 |
| MboI | GATC | 1 cut(s) | 25 |
| MboII | GAAGA | 2 cut(s) | 164, 167 |
| MnlI | CCTC | 3 cut(s) | 61, 87, 172 |
| MspI | CCGG | 1 cut(s) | 95 |
| NdeII | GATC | 1 cut(s) | 25 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 113 |
| PfeI | GAWTC | 2 cut(s) | 31, 118 |
| PstNI | CAGNNNCTG | 1 cut(s) | 34 |
| Sau3AI | GATC | 1 cut(s) | 25 |
| SetI | ASST | 1 cut(s) | 186 |
| SgeI | CNNG | 5 cut(s) | 69, 107, 134, 176, 182 |
| SmlI | CTYRAG | 1 cut(s) | 122 |
| SmoI | CTYRAG | 1 cut(s) | 122 |
| SsiI | CCGC | 1 cut(s) | 141 |
| TaaI | ACNGT | 1 cut(s) | 40 |
| TaiI | ACGT | 1 cut(s) | 186 |
| TaqII | GACCGA | 1 cut(s) | 164 |
| TfiI | GAWTC | 2 cut(s) | 31, 118 |