RchiOBHm_Chr3g0469571

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
15367958 .. 15368634
677 bp
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UTR
Exon/CDS
Intron
PRQ43540

Sequence Viewer

Length: 156 bp
ATGGCAGAGAAGATGAGATTCTTGGGTTCTTGGATTGAAGTTGCCCCTGCCATTCTAATACGTCCCCATAAGACTTCAACTTCTCCTGACTTGGAGACGATTACTGAAGAGTTGGAGCTCGAGGCAGAAGACCATGACCAGAAGCCCGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.79

Weight (kDa)

4.6

Isoelectric Point (pI)

68.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018727)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03210 AT5G03210
prunus_persica Prupe.6G236900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469561 RchiOBHm_Chr3g0469571
rosa_multiflora Rmu_sc0006483.1_g000004
rosa_rugosa Rorug03G0102600
rosa_samantha Rh3AG151900 Rh3DG199900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 126
AgsI TTSAA 2 cut(s) 38, 78
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 119
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 120
BspACI CCGC 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 147
CviAII CATG 1 cut(s) 134
CviJI RGCY 2 cut(s) 118, 145
CviKI_1 RGCY 2 cut(s) 118, 145
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 69, 135
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 133
FauI CCCGC 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 137
HinfI GANTC 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 1 cut(s) 137
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 60, 99, 152
MaeII ACGT 1 cut(s) 61
MboII GAAGA 3 cut(s) 22, 119, 140
MfeI CAATTG 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 1 cut(s) 115
MunI CAATTG 1 cut(s) 151
NlaIII CATG 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 119
PfeI GAWTC 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 120
PspXI VCTCGAGB 1 cut(s) 119
SacI GAGCTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 120
SetI ASST 2 cut(s) 64, 120
Sfr274I CTCGAG 1 cut(s) 119
SgeI CNNG 9 cut(s) 34, 42, 59, 98, 103, 131, 133, 146, 151
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 147
SstI GAGCTC 1 cut(s) 120
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 151
TfiI GAWTC 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.