Rh3AG151900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
13601527 .. 13604337
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG151900.1

Sequence Viewer

Length: 261 bp
ATGGCAAAGGAGATTAGGAATCTGGATGCGTGGATGGAGGTAGTTCCTGCCCCTTTCATTTACCCACGAAAGACTTCGAATTCTCCTGGTTTAGAGACGATTCCAGAGGAAAGTGTTGAGGAAGAGAGTCCAATTTGGATGCACACAAGCTTGCAAAGCTTGCGTTGTATTCTAATGTGTCTGCTAATTGGAAGGGTCATGTACCTTCCACCATTGGAAGCCTTGTTGCTACCCATTGTAATACTTCTTCTCATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.82

Weight (kDa)

4.74

Isoelectric Point (pI)

95.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018727)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03210 AT5G03210
prunus_persica Prupe.6G236900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469561 RchiOBHm_Chr3g0469571
rosa_multiflora Rmu_sc0006483.1_g000004
rosa_rugosa Rorug03G0102600
rosa_samantha Rh3AG151900 Rh3DG199900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 2 cut(s) 150, 159
AluI AGCT 2 cut(s) 150, 159
Alw26I GTCTC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 77
BarI GAAGNNNNNNTAC 1 cut(s) 231
BccI CCATC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 16, 129
Bpu14I TTCGAA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 87
BseGI GGATG 3 cut(s) 31, 39, 144
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 152, 161
BstF5I GGATG 3 cut(s) 31, 39, 144
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 156, 160
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BtsCI GGATG 3 cut(s) 31, 39, 144
Cac8I GCNNGC 2 cut(s) 152, 161
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 199
CviJI RGCY 3 cut(s) 150, 159, 221
CviKI_1 RGCY 3 cut(s) 150, 159, 221
CviQI GTAC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 202
FaiI YATR 1 cut(s) 200
FatI CATG 1 cut(s) 198
FokI GGATG 3 cut(s) 38, 46, 151
Hin1II CATG 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 148, 157
HinfI GANTC 3 cut(s) 19, 100, 127
Hpy188III TCNNGA 2 cut(s) 23, 104
HpyAV CCTTC 2 cut(s) 186, 215
HpyCH4V TGCA 2 cut(s) 142, 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 160
Hsp92II CATG 1 cut(s) 202
LpnPI CCDG 5 cut(s) 8, 60, 72, 99, 117
LweI GCATC 2 cut(s) 16, 129
MboII GAAGA 2 cut(s) 134, 239
MluCI AATT 3 cut(s) 79, 132, 186
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 3 cut(s) 31, 100, 112
MroXI GAANNNNTTC 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 156, 160
NlaIII CATG 1 cut(s) 202
NspV TTCGAA 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 19, 100
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 87
SetI ASST 4 cut(s) 42, 152, 161, 207
SfaNI GCATC 2 cut(s) 16, 129
SfuI TTCGAA 1 cut(s) 77
Sse9I AATT 3 cut(s) 79, 132, 186
StyD4I CCNGG 1 cut(s) 85
TaqI TCGA 1 cut(s) 77
TasI AATT 3 cut(s) 79, 132, 186
TfiI GAWTC 2 cut(s) 19, 100
TspDTI ATGAA 1 cut(s) 46
XapI RAATTY 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.