Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009181

Physical Location & Seq

Genomic Coordinates Reverse (-)

1553799 .. 1556605

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGAAGAACACGACGCTGTTTCTGGAGGGTGTTCTCCGATTCCCAGATCCGACTTAAAGATCGGCGGCAATGAATTGGATGAAAGACAGGAGTTGAGTAAAATTGAACCTGTTACACCAACTCTAAATTCAGGTAACACTGTTCATGGTTCTAAAGACGTTGAAAAAGCCAATGGCATGTCTCAAGTTGGTAAAGTTTCAGAGAGTTTTGTTACAGAAGGGAAGAATATTAAGACTGAACTGTTGGTGGGTCAAGAGGTTAAGTCTTCTTCCAGTAAGCTTGTTCTCAACACTGATGTTGATTGTGATAAGCGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGCTTGAATGATGATTTAACTTCGGTTTGCTCCTCTAGGATAAGCCAGAAAACTAGTTCAATGGATGTTTATTCAGAGTGTGGGAGTTCCAATGGTTCTGTAGCCAAAAGAGATCCAATGAAGGTTTGGACAGAGATGAAACAGAACGGGTATCTCTCTAATCCGAATGGTGGGATTTCAACGACATCAAGTAGCTGTCTCATATCATCTTCTCATGGAGGGATACCGGCTCCAAAGAAACGTGGACGCAAAACCAAGATTAATAATGACGCTGCAGTGGCGAAGAAGAGAAAGATAGAAAGGAAGGAAGAAGTTGACAGGTTTGCTAGGCTTGCTGCTCCTAGCGGACTGCTTAACGAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATCGAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAACTATCATTCTACATTGAGGCATAGTAATAGTGCAGATGGGAGTCCTAGGAAAAACTTGGGAGATGCCTGCAGATCTGAATTTTACCAAGTATTCCAGTATGCCTTGCCTAAAGATATGTACTCTATGCGCTACTACGCCGAGAAATGCGCTGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTCGAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGACAGTTCCTTGTCGAGTGAGGACGCATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACAGTAGCTTCTCAATGGTTGGAATTGCTTCATCAGGACATCAAAGGCCGTGTTTCTGCTCTTCGACGTAGCAGGAAGAGGGTTCGTGCAGTTGTCACGATAGAGTTACCTCACTTAATAAGGAAAGAGTTTCCAGCTGATCAAGAAAATGACCCAACTCTACTCCTTGGTGGGGCTTCGAAGGCTTCAACAGTCGATATCCATAAGAGCAGATGGATGACTCTGTTTAAGCAACTCGAACACAAGCTATCAGAAGAAGAGTCACAATTGGAAAGCTGGTTAAACCAAGTGAGATATATGCAATCACATTGTGATGAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAGAATTTCTTACAGTTAGGGATGCCATTGGACTCTAGAGCTGCAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCTATATACTCGACCTGCAGTTTTCTAGAGGAGAACATAACCTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

530

Amino Acids

58.27

Weight (kDa)

6.87

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05240 AT5G05240
fragaria_vesca	FvH4_7g25930 FvH4_7g25930 FvH4_7g25930
malus_domestica	MD01G1167700.v1.1 MD07G1233700.v1.1
prunus_persica	Prupe.2G264100_v2.0.a1
pyrus_communis	pycom01g18070 pycom07g21150
rosa_chinensis	RchiOBHm_Chr1g0372301
rosa_laevigata	RLG00000026911
rosa_multiflora	Rmu_co8286097.1_g000001 Rmu_sc0001755.1_g000013 Rmu_sc0010007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285080
rosa_rugosa	Rorug01G0370800
rosa_samantha	Rh1AG379200 Rh1BG342600 Rh1CG356300 Rh1DG374000
rosa_wichuraiana	Rw1G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1004, 1565
AccII	CGCG	1 cut(s)	1499
AciI	CCGC	4 cut(s)	66, 341, 702, 1097
AclWI	GGATC	2 cut(s)	42, 464
AcsI	RAATTY	3 cut(s)	127, 887, 1453
AdeI	CACNNNGTG	1 cut(s)	1412
AfaI	GTAC	2 cut(s)	762, 929
AfiI	CCNNNNNNNGG	2 cut(s)	527, 1273
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	7 cut(s)	107, 164, 364, 417, 537, 721, 1290
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	724
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
Alw26I	GTCTC	2 cut(s)	186, 560
AlwI	GGATC	2 cut(s)	42, 464
AoxI	GGCC	1 cut(s)	1147
ApeKI	GCWGC	7 cut(s)	357, 629, 692, 1490, 1532, 1535, 1538
ApoI	RAATTY	3 cut(s)	127, 887, 1453
ArsI	GACNNNNNNTTYG	2 cut(s)	768, 800
AseI	ATTAAT	1 cut(s)	618
Asp700I	GAANNNNTTC	1 cut(s)	1128
AspA2I	CCTAGG	1 cut(s)	854
AspLEI	GCGC	3 cut(s)	939, 959, 1501
AsuII	TTCGAA	1 cut(s)	1280
AvrII	CCTAGG	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	7 cut(s)	344, 616, 679, 1477, 1522, 1544, 1550
BccI	CCATC	2 cut(s)	839, 1308
BceAI	ACGGC	1 cut(s)	1134
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	1240
BcoDI	GTCTC	2 cut(s)	186, 560
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	8 cut(s)	393, 411, 684, 699, 855, 1077, 1485, 1568
BfmI	CTRYAG	7 cut(s)	456, 630, 877, 1101, 1536, 1558, 1585
BfrI	CTTAAG	1 cut(s)	323
BfuAI	ACCTGC	2 cut(s)	1004, 1565
BfuI	GTATCC	1 cut(s)	573
BglII	AGATCT	2 cut(s)	881, 1063
BisI	GCNGC	9 cut(s)	67, 358, 630, 693, 1098, 1491, 1533, 1536, 1539
BlnI	CCTAGG	1 cut(s)	854
BlsI	GCNGC	9 cut(s)	68, 359, 631, 694, 1099, 1492, 1534, 1537, 1540
BmcAI	AGTACT	1 cut(s)	762
Bme1390I	CCNGG	1 cut(s)	726
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	5 cut(s)	334, 790, 862, 1067, 1461
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	1280
BpuEI	CTTGAG	3 cut(s)	168, 1453, 1459
BsaJI	CCNNGG	3 cut(s)	724, 854, 1267
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 1273
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	2 cut(s)	273, 904
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	724, 854, 1267
BseGI	GGATG	5 cut(s)	85, 349, 427, 1323, 1476
BseLI	CCNNNNNNNGG	2 cut(s)	527, 1273
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	1038, 1521
BseNI	ACTGG	2 cut(s)	273, 904
BseRI	GAGGAG	2 cut(s)	379, 1586
BseXI	GCAGC	7 cut(s)	344, 616, 679, 1477, 1522, 1544, 1550
BsgI	GTGCAG	2 cut(s)	861, 1209
Bsh1236I	CGCG	1 cut(s)	1499
BshFI	GGCC	1 cut(s)	1149
BsiSI	CCGG	1 cut(s)	584
BslI	CCNNNNNNNGG	2 cut(s)	527, 1273
BsmAI	GTCTC	2 cut(s)	186, 560
BsnI	GGCC	1 cut(s)	1149
Bsp119I	TTCGAA	1 cut(s)	1280
Bsp143I	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
BspACI	CCGC	4 cut(s)	66, 341, 702, 1097
BspANI	GGCC	1 cut(s)	1149
BspCNI	CTCAG	2 cut(s)	1037, 1520
BspFNI	CGCG	1 cut(s)	1499
BspLI	GGNNCC	1 cut(s)	588
BspMAI	CTGCAG	4 cut(s)	634, 881, 1540, 1562
BspMI	ACCTGC	2 cut(s)	1004, 1565
BspPI	GGATC	2 cut(s)	42, 464
BspQI	GCTCTTC	1 cut(s)	1167
BspT104I	TTCGAA	1 cut(s)	1280
BspTI	CTTAAG	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	273, 904
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	3 cut(s)	724, 854, 1267
BssMI	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
BssT1I	CCWWGG	2 cut(s)	854, 1267
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	9 cut(s)	142, 243, 991, 1037, 1073, 1090, 1105, 1294, 1464
Bst6I	CTCTTC	4 cut(s)	638, 1167, 1172, 1353
BstAFI	CTTAAG	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	1280
BstC8I	GCNNGC	3 cut(s)	315, 690, 877
BstDEI	CTNAG	2 cut(s)	1024, 1507
BstF5I	GGATG	5 cut(s)	85, 349, 427, 1323, 1476
BstFNI	CGCG	1 cut(s)	1499
BstHHI	GCGC	3 cut(s)	939, 959, 1501
BstKTI	GATC	7 cut(s)	50, 63, 472, 884, 1066, 1243, 1506
BstMAI	GTCTC	2 cut(s)	186, 560
BstMBI	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
BstMWI	GCNNNNNNNGC	7 cut(s)	319, 635, 689, 1106, 1283, 1496, 1538
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	7 cut(s)	456, 630, 877, 1101, 1536, 1558, 1585
BstUI	CGCG	1 cut(s)	1499
BstV1I	GCAGC	7 cut(s)	344, 616, 679, 1477, 1522, 1544, 1550
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	4 cut(s)	47, 469, 881, 1063
BstYI	RGATCY	4 cut(s)	47, 469, 881, 1063
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	1149
BtsCI	GGATG	5 cut(s)	85, 349, 427, 1323, 1476
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	6 cut(s)	138, 291, 639, 979, 1078, 1086
BveI	ACCTGC	2 cut(s)	1004, 1565
Cac8I	GCNNGC	3 cut(s)	315, 690, 877
CfoI	GCGC	3 cut(s)	939, 959, 1501
Cfr10I	RCCGGY	1 cut(s)	583
CseI	GACGC	4 cut(s)	23, 612, 635, 1064
Csp6I	GTAC	2 cut(s)	761, 928
CviAII	CATG	4 cut(s)	146, 178, 572, 740
CviQI	GTAC	2 cut(s)	761, 928
DdeI	CTNAG	2 cut(s)	1024, 1507
DpnI	GATC	7 cut(s)	49, 62, 471, 883, 1065, 1242, 1505
DpnII	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
DraIII	CACNNNGTG	1 cut(s)	1412
Eam1104I	CTCTTC	4 cut(s)	638, 1167, 1172, 1353
EarI	CTCTTC	4 cut(s)	638, 1167, 1172, 1353
Eco130I	CCWWGG	2 cut(s)	854, 1267
Eco32I	GATATC	1 cut(s)	1300
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	1300
EcoT14I	CCWWGG	2 cut(s)	854, 1267
ErhI	CCWWGG	2 cut(s)	854, 1267
FaeI	CATG	4 cut(s)	149, 181, 575, 743
FatI	CATG	4 cut(s)	145, 177, 571, 739
FbaI	TGATCA	1 cut(s)	1240
Fnu4HI	GCNGC	9 cut(s)	67, 358, 630, 693, 1098, 1491, 1533, 1536, 1539
FokI	GGATG	5 cut(s)	92, 356, 434, 1330, 1483
Fsp4HI	GCNGC	9 cut(s)	67, 358, 630, 693, 1098, 1491, 1533, 1536, 1539
FspBI	CTAG	8 cut(s)	393, 411, 684, 699, 855, 1077, 1485, 1568
GlaI	GCGC	3 cut(s)	938, 958, 1500
GluI	GCNGC	9 cut(s)	67, 358, 630, 693, 1098, 1491, 1533, 1536, 1539
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	1149
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	4 cut(s)	23, 612, 635, 1064
HhaI	GCGC	3 cut(s)	939, 959, 1501
Hin1II	CATG	4 cut(s)	149, 181, 575, 743
Hin6I	GCGC	3 cut(s)	937, 957, 1499
HinP1I	GCGC	3 cut(s)	937, 957, 1499
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	5 cut(s)	40, 850, 1321, 1361, 1481
HpaII	CCGG	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	602, 673
Hpy188III	TCNNGA	7 cut(s)	24, 254, 1136, 1198, 1244, 1485, 1568
Hpy8I	GTNNAC	2 cut(s)	602, 673
Hpy99I	CGWCG	2 cut(s)	17, 1170
HpyAV	CCTTC	5 cut(s)	212, 472, 655, 1276, 1412
HpyCH4III	ACNGT	9 cut(s)	142, 243, 991, 1037, 1073, 1090, 1105, 1294, 1464
HpyCH4IV	ACGT	3 cut(s)	159, 598, 1168
HpyCH4V	TGCA	9 cut(s)	632, 842, 879, 1190, 1402, 1426, 1493, 1538, 1560
HpyF10VI	GCNNNNNNNGC	7 cut(s)	319, 635, 689, 1106, 1283, 1496, 1538
HpyF3I	CTNAG	2 cut(s)	1024, 1507
HpySE526I	ACGT	3 cut(s)	159, 598, 1168
Hsp92II	CATG	4 cut(s)	149, 181, 575, 743
HspAI	GCGC	3 cut(s)	937, 957, 1499
Ksp22I	TGATCA	1 cut(s)	1240
Kzo9I	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
LguI	GCTCTTC	1 cut(s)	1167
LmnI	GCTCC	3 cut(s)	392, 592, 700
Lsp1109I	GCAGC	7 cut(s)	344, 616, 679, 1477, 1522, 1544, 1550
LweI	GCATC	5 cut(s)	334, 790, 862, 1067, 1461
MaeI	CTAG	8 cut(s)	393, 411, 684, 699, 855, 1077, 1485, 1568
MaeII	ACGT	3 cut(s)	159, 598, 1168
MaeIII	GTNAC	6 cut(s)	112, 134, 211, 1195, 1206, 1362
MalI	GATC	7 cut(s)	49, 62, 471, 883, 1065, 1242, 1505
MboI	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
MfeI	CAATTG	1 cut(s)	1367
MflI	RGATCY	4 cut(s)	47, 469, 881, 1063
MluCI	AATT	9 cut(s)	74, 102, 127, 716, 729, 887, 1124, 1367, 1453
MlyI	GAGTC	4 cut(s)	859, 1315, 1370, 1475
MmeI	TCCRAC	2 cut(s)	75, 1101
MroXI	GAANNNNTTC	1 cut(s)	1128
MslI	CAYNNNNRTG	1 cut(s)	1413
MspA1I	CMGCKG	3 cut(s)	357, 1238, 1535
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	726
MunI	CAATTG	1 cut(s)	1367
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	1499
MwoI	GCNNNNNNNGC	7 cut(s)	319, 635, 689, 1106, 1283, 1496, 1538
NdeII	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
NlaIII	CATG	4 cut(s)	149, 181, 575, 743
NlaIV	GGNNCC	1 cut(s)	588
NmeAIII	GCCGAG	1 cut(s)	973
NmuCI	GTSAC	2 cut(s)	1195, 1362
NspI	RCATGY	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	1280
PciSI	GCTCTTC	1 cut(s)	1167
PdmI	GAANNNNTTC	1 cut(s)	1128
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	9 cut(s)	68, 359, 631, 694, 1099, 1492, 1534, 1537, 1540
PleI	GAGTC	4 cut(s)	858, 1315, 1369, 1475
PpsI	GAGTC	4 cut(s)	858, 1315, 1369, 1475
PshBI	ATTAAT	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	1 cut(s)	588
PstI	CTGCAG	4 cut(s)	634, 881, 1540, 1562
PsuI	RGATCY	4 cut(s)	47, 469, 881, 1063
PvuII	CAGCTG	3 cut(s)	357, 1238, 1535
RsaI	GTAC	2 cut(s)	762, 929
RsaNI	GTAC	2 cut(s)	761, 928
RseI	CAYNNNNRTG	1 cut(s)	1413
SapI	GCTCTTC	1 cut(s)	1167
SatI	GCNGC	9 cut(s)	67, 358, 630, 693, 1098, 1491, 1533, 1536, 1539
Sau3AI	GATC	7 cut(s)	47, 60, 469, 881, 1063, 1240, 1503
ScaI	AGTACT	1 cut(s)	762
SchI	GAGTC	4 cut(s)	859, 1315, 1370, 1475
ScrFI	CCNGG	1 cut(s)	726
SfaNI	GCATC	5 cut(s)	334, 790, 862, 1067, 1461
SfcI	CTRYAG	7 cut(s)	456, 630, 877, 1101, 1536, 1558, 1585
SfuI	TTCGAA	1 cut(s)	1280
SmiMI	CAYNNNNRTG	1 cut(s)	1413
SmlI	CTYRAG	4 cut(s)	183, 323, 1432, 1438
SmoI	CTYRAG	4 cut(s)	183, 323, 1432, 1438
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	9 cut(s)	74, 102, 127, 716, 729, 887, 1124, 1367, 1453
SsiI	CCGC	4 cut(s)	66, 341, 702, 1097
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	8 cut(s)	393, 411, 684, 699, 855, 1077, 1485, 1568
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	2 cut(s)	854, 1267
TaaI	ACNGT	9 cut(s)	142, 243, 991, 1037, 1073, 1090, 1105, 1294, 1464
TaiI	ACGT	3 cut(s)	162, 601, 1171
TaqI	TCGA	8 cut(s)	774, 998, 1046, 1165, 1280, 1296, 1338, 1553
TasI	AATT	9 cut(s)	74, 102, 127, 716, 729, 887, 1124, 1367, 1453
TatI	WGTACW	2 cut(s)	760, 927
TauI	GCSGC	2 cut(s)	69, 1100
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	6 cut(s)	145, 298, 639, 979, 1078, 1093
TseFI	GTSAC	2 cut(s)	1195, 1362
TseI	GCWGC	7 cut(s)	357, 629, 692, 1490, 1532, 1535, 1538
Tsp45I	GTSAC	2 cut(s)	1195, 1362
TspDTI	ATGAA	7 cut(s)	87, 96, 134, 491, 509, 1121, 1431
TspRI	CASTG	6 cut(s)	145, 298, 639, 979, 1078, 1093
Vha464I	CTTAAG	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	3 cut(s)	127, 887, 1453
XbaI	TCTAGA	2 cut(s)	1484, 1567
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XmaJI	CCTAGG	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	1128
XspI	CTAG	8 cut(s)	393, 411, 684, 699, 855, 1077, 1485, 1568
ZrmI	AGTACT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.