Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009181

Physical Location & Seq

Genomic Coordinates Forward (+)

47584239 .. 47588546

Gene Structure 4308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGGCGAATCGGGTCGATTCCGGAAAAGGGTCGGTGCCCAGATCGGATTCCAAGGTTTTGGGGGAGAAGCGGGTTAGTGTTGAATTGGGAGGTGAAGATGAACTTGGGCCTAGAAAACGGATTAAGATGCGAGATCTTGAATCAGTGTGCCGCGCTGAAGGAATCAGTAAGAAACAATCCAGTGGTCAATTTCAACTCAATGATGAAGAGATGTCTGAAATTACTGAGGTGCCTGTCACCTCTGATTTGGATGCTTCTCGAGCTGGAAAAGCTGTGAGAACTACATTCCCAATTGCGGTCAACCCTATTCCCAAGTCACTGGATCTCATCAATGATGCGTGCATTGCCAAGAATAAGGTTCAGAATGGCAGTCAGCAATGCTCTAAGAGTTCAGAAAAGACCACATCGCCTAGGGATCAAGTTACTGAGGTGCATAAAAACTCTGATTTGGATTCTTCTCGAGTGGGAAAATCTGTAAGAAACACAATACCAGCTGCAGTCAACCCTATTCCTAAGCCACTGAATCTCAATACTGTTGTGTGCATTGCTGACAGTACAATTCAGAATGGCAGTCAGCAATGTTCTAAAGAAAAGACCACATCGCCTAGGGATCAAGTGACTGAGGTGCCTAAAACCTCTGATTTAGATGCTTCTCGAGTGGGAACATCTGCAAGAAGTACAATTCCAGTTGTGGCCAACCCTATTCCTAAGCCACTAGATCTCAATACTGATGCGTGCATTGGCAGCAGTATGGTTCAAAATGGCAGTCATCAATGCTCTCAGAGTTCAGAAAAGACCACATTGCCTAGGGATCAAGTTACTGAGTTGCCTAAAACCTCTGATCTGTATGCTTCTCAAGCAGGAACATCTATGAGAAGCACAATTCCAGTTGTTGTCAGCCCTATTCCAAGGCCACTAGATCTTAATACTGACTCATGCATTGCCAGCAATACGGTTCAGAATACCAGTCAGCAATGCTCTCAGAATTTAGAAAAGTCCACTGTGCTTAGGGATCATGACAAAGAATGCCATACTAATCATGGGAATGCAAAAGGCAATGCGTTGGATCTAAATGGTAAAGGTGTTTCAAGCTCAGAAAACCAAGATCCTTTTTATCCTTATAAAAATCTCAATTACTTAAAGTCAAGAGATGTCTCTGAATGCGGGAGCAGCACCGGCCCATTGGAAGAGAAAGATCCAATGACAGTGTGGAAGGAGATGAAGCAAAATGGTTTCCTCTCATCTACTCATGGAGGCATATCAAAGCCAAAGCAACCGGTAGCAATTCCAACGCCAAAGCAGCAATATGGAGGCATGCCAATTTCAAAGCAACATGGAAGCATACCAATGTCAAAGCAGCATGGAGGCATACCAATGCCAAAGCCACGCCCCAAGAAAAATAAAAGTGAAGAGCAGAAGAAAAAGGTGGAACGTGCAAAGAAGGAACAAGTGGATAGGTTCGCAAAGATTGCTGCTCCAAGTGGACTGCTGAATGAACTGAACCCTGGGATCATCAACCATGTTAGAAATAGAAAGCAGGTGCATTCTATAATAGAGGCTCTTGTAAGATCTGAAAGACTGGAAGTTAGCCGTGTGGAAAACAGACAGACAATCCATCAGCAGAGTGGAACTGTAGAAAACAGGCAGGACCTGGAAAATATGAGGGAGAGTTGGTGTCCAAATACTTTCTTCGAGGACATGCAGGCACAAGGGTACACTATACTGATGAATAAACCTTCGTTGGTTCAAGTGGACAACAGTATAGAGGGTGACCCAACCGCAAAAGAGAGCTTTGGTGGAATAAGTTTTGCATCACACTCCGCCCTTGTAAGTGAGGAAGAGACGCTTGCATTGAAATTGTCTTCATCAAATATAGCACCTGAGGAGGATACTCCTTTGTCATCTAAAGAGGAAACAACATCCTATCTTTCTTTTAAAGCTGCTACTGTTGCTTCTCAGTGGTTGGAACTTATTCAACAAGATATTCAAGGACGTCTTTCAGCACTGCAGCGCAGTAGGAAGAGAGTTCGAAATGTAATAAGTACAGATTTGCCCTTATTGCTGAAAAAAGAGTTTTCATCTGATAAGGAGAATGACTCTTCTATCACAAAAAGTTCTGTGGATGGACTTTCCAGCCGTGCTTGTGCAGAGATGCATCGAGCAAGATGGGGCCCACGGTTTGATCATATGGATAAAGCACTTTCAGAAGAAGAGGATCAACTTGTGAGTGCTAAAGAAACTGTAAATTTATTTCAATGTAAAGATATATCTGGGTGTTTTAATTTGATGAAGTATCTTTGCCAACTGTGCAATTATCAGATCTTGGTTAGTTTGTTGGAACTCAATCTAATTTACACTAACAAATTTCAGGAAAGCTGGTTGAACCAAGTAAGAGAAATGCAAGTTCACTGTAACAAGGGCCTGCAACTTATCAATTGGAGTTCTGGCATTCAAGCATTGGGTACATCTGACACTGATACTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

828

Amino Acids

91.26

Weight (kDa)

8.14

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05240 AT5G05240
fragaria_vesca	FvH4_7g25930 FvH4_7g25930 FvH4_7g25930
malus_domestica	MD01G1167700.v1.1 MD07G1233700.v1.1
prunus_persica	Prupe.2G264100_v2.0.a1
pyrus_communis	pycom01g18070 pycom07g21150
rosa_chinensis	RchiOBHm_Chr1g0372301
rosa_laevigata	RLG00000026911
rosa_multiflora	Rmu_co8286097.1_g000001 Rmu_sc0001755.1_g000013 Rmu_sc0010007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285080
rosa_rugosa	Rorug01G0370800
rosa_samantha	Rh1AG379200 Rh1BG342600 Rh1CG356300 Rh1DG374000
rosa_wichuraiana	Rw1G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1122
AarI	CACCTGC	1 cut(s)	1528
AatII	GACGTC	1 cut(s)	1996
Acc36I	ACCTGC	1 cut(s)	1528
AccB1I	GGYRCC	3 cut(s)	34, 229, 625
AccII	CGCG	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	6 cut(s)	70, 151, 296, 1164, 1779, 1821
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	3 cut(s)	985, 2245, 2363
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	1993
AfaI	GTAC	5 cut(s)	556, 679, 1715, 2044, 2464
AfiI	CCNNNNNNNGG	2 cut(s)	27, 295
AgeI	ACCGGT	1 cut(s)	1276
AjnI	CCWGG	2 cut(s)	1504, 1650
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	7 cut(s)	263, 272, 494, 1092, 1791, 1940, 2376
AluI	AGCT	7 cut(s)	263, 272, 494, 1092, 1791, 1940, 2376
Alw26I	GTCTC	2 cut(s)	1159, 1835
AlwNI	CAGNNNCTG	1 cut(s)	1651
Ama87I	CYCGRG	3 cut(s)	258, 459, 654
Aor13HI	TCCGGA	1 cut(s)	20
AoxI	GGCC	6 cut(s)	107, 693, 911, 1177, 2170, 2419
ApaI	GGGCCC	1 cut(s)	2174
ApeKI	GCWGC	8 cut(s)	494, 744, 1170, 1300, 1357, 1472, 1940, 2008
ApoI	RAATTY	3 cut(s)	985, 2245, 2363
ArsI	GACNNNNNNTTYG	2 cut(s)	751, 783
AsiGI	ACCGGT	1 cut(s)	1276
Asp700I	GAANNNNTTC	1 cut(s)	1971
AspA2I	CCTAGG	3 cut(s)	410, 605, 806
AspLEI	GCGC	2 cut(s)	155, 2013
AspS9I	GGNCC	6 cut(s)	107, 1178, 1648, 2170, 2171, 2419
AsuHPI	GGTGA	3 cut(s)	104, 229, 1781
AsuII	TTCGAA	1 cut(s)	2029
AvaI	CYCGRG	3 cut(s)	258, 459, 654
AvaII	GGWCC	1 cut(s)	1648
AvrII	CCTAGG	3 cut(s)	410, 605, 806
AxyI	CCTNAGG	1 cut(s)	1881
BaeGI	GKGCMC	2 cut(s)	39, 2174
BalI	TGGCCA	1 cut(s)	695
BanI	GGYRCC	3 cut(s)	34, 229, 625
BanII	GRGCYC	1 cut(s)	2174
BbsI	GAAGAC	1 cut(s)	1854
BbvI	GCAGC	8 cut(s)	481, 756, 1182, 1312, 1369, 1459, 1927, 2020
BccI	CCATC	3 cut(s)	1623, 2117, 2160
BceAI	ACGGC	2 cut(s)	1575, 2121
BciT130I	CCWGG	2 cut(s)	1506, 1652
BciVI	GTATCC	1 cut(s)	1882
BclI	TGATCA	1 cut(s)	2182
BcoDI	GTCTC	2 cut(s)	1159, 1835
BfaI	CTAG	7 cut(s)	111, 411, 606, 716, 807, 917, 2481
BfmI	CTRYAG	3 cut(s)	495, 1632, 2006
BfuAI	ACCTGC	1 cut(s)	1528
BfuI	GTATCC	1 cut(s)	1882
BglII	AGATCT	5 cut(s)	133, 718, 919, 1568, 2319
BisI	GCNGC	9 cut(s)	151, 495, 745, 1171, 1301, 1358, 1473, 1941, 2009
BlnI	CCTAGG	3 cut(s)	410, 605, 806
BlsI	GCNGC	9 cut(s)	152, 496, 746, 1172, 1302, 1359, 1474, 1942, 2010
Bme1390I	CCNGG	2 cut(s)	1506, 1652
Bme18I	GGWCC	1 cut(s)	1648
BmeT110I	CYCGRG	3 cut(s)	258, 459, 654
BmgT120I	GGNCC	6 cut(s)	107, 1178, 1648, 2170, 2171, 2419
BmiI	GGNNCC	5 cut(s)	36, 231, 627, 2171, 2172
BmrFI	CCNGG	2 cut(s)	1506, 1652
BmsI	GCATC	8 cut(s)	117, 241, 325, 637, 721, 1820, 2142, 2164
BpiI	GAAGAC	1 cut(s)	1854
BplI	GAGNNNNNCTC	2 cut(s)	2081, 2113
Bpu10I	CCTNAGC	3 cut(s)	513, 708, 1007
Bpu14I	TTCGAA	1 cut(s)	2029
BpuEI	CTTGAG	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	1993
BsaJI	CCNNGG	8 cut(s)	51, 410, 605, 806, 908, 1504, 1505, 2174
BsaWI	WCCGGW	2 cut(s)	20, 1276
BsaXI	ACNNNNNCTCC	2 cut(s)	1658, 1688
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 295
Bse118I	RCCGGY	2 cut(s)	1175, 1276
Bse1I	ACTGG	6 cut(s)	180, 324, 686, 887, 966, 1584
Bse21I	CCTNAGG	1 cut(s)	1881
Bse3DI	GCAATG	8 cut(s)	342, 383, 543, 584, 800, 939, 980, 1063
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	1506, 1652
BseDI	CCNNGG	8 cut(s)	51, 410, 605, 806, 908, 1504, 1505, 2174
BseGI	GGATG	3 cut(s)	256, 1919, 2128
BseLI	CCNNNNNNNGG	2 cut(s)	27, 295
BseMI	GCAATG	8 cut(s)	342, 383, 543, 584, 800, 939, 980, 1063
BseMII	CTCAG	9 cut(s)	216, 417, 612, 794, 813, 995, 1107, 1872, 1970
BseNI	ACTGG	6 cut(s)	180, 324, 686, 887, 966, 1584
BseRI	GAGGAG	1 cut(s)	1898
BseSI	GKGCMC	2 cut(s)	39, 2174
BseXI	GCAGC	8 cut(s)	481, 756, 1182, 1312, 1369, 1459, 1927, 2020
BsgI	GTGCAG	1 cut(s)	2166
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	6 cut(s)	109, 695, 913, 1179, 2172, 2421
BshNI	GGYRCC	3 cut(s)	34, 229, 625
BshTI	ACCGGT	1 cut(s)	1276
BsiHKCI	CYCGRG	3 cut(s)	258, 459, 654
BsiSI	CCGG	3 cut(s)	21, 1176, 1277
BslI	CCNNNNNNNGG	2 cut(s)	27, 295
BsmAI	GTCTC	2 cut(s)	1159, 1835
BsmBI	CGTCTC	1 cut(s)	1835
BsmI	GAATGC	5 cut(s)	1031, 1051, 1166, 1543, 2448
BsnI	GGCC	6 cut(s)	109, 695, 913, 1179, 2172, 2421
BsoBI	CYCGRG	3 cut(s)	258, 459, 654
Bsp119I	TTCGAA	1 cut(s)	2029
Bsp120I	GGGCCC	1 cut(s)	2170
Bsp1286I	GDGCHC	2 cut(s)	39, 2174
Bsp13I	TCCGGA	1 cut(s)	20
BspACI	CCGC	6 cut(s)	70, 151, 296, 1164, 1779, 1821
BspANI	GGCC	6 cut(s)	109, 695, 913, 1179, 2172, 2421
BspCNI	CTCAG	9 cut(s)	217, 418, 613, 793, 814, 994, 1106, 1873, 1969
BspEI	TCCGGA	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	5 cut(s)	36, 231, 627, 2171, 2172
BspMAI	CTGCAG	2 cut(s)	499, 2010
BspMI	ACCTGC	1 cut(s)	1528
BspQI	GCTCTTC	1 cut(s)	1404
BspT104I	TTCGAA	1 cut(s)	2029
BspT107I	GGYRCC	3 cut(s)	34, 229, 625
BsrDI	GCAATG	8 cut(s)	342, 383, 543, 584, 800, 939, 980, 1063
BsrFI	RCCGGY	2 cut(s)	1175, 1276
BsrI	ACTGG	6 cut(s)	180, 324, 686, 887, 966, 1584
BssAI	RCCGGY	2 cut(s)	1175, 1276
BssECI	CCNNGG	8 cut(s)	51, 410, 605, 806, 908, 1504, 1505, 2174
BssNI	GRCGYC	1 cut(s)	1993
BssT1I	CCWWGG	5 cut(s)	51, 410, 605, 806, 908
Bst2UI	CCWGG	2 cut(s)	1506, 1652
Bst6I	CTCTTC	7 cut(s)	201, 1182, 1404, 1833, 2015, 2104, 2205
BstACI	GRCGYC	1 cut(s)	1993
BstAPI	GCANNNNNTGC	1 cut(s)	1469
BstBI	TTCGAA	1 cut(s)	2029
BstC8I	GCNNGC	7 cut(s)	340, 736, 946, 1316, 1704, 1848, 2423
BstDSI	CCRYGG	1 cut(s)	2174
BstEII	GGTNACC	1 cut(s)	1769
BstF5I	GGATG	3 cut(s)	256, 1919, 2128
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	155, 2013
BstMAI	GTCTC	2 cut(s)	1159, 1835
BstNI	CCWGG	2 cut(s)	1506, 1652
BstNSI	RCATGY	2 cut(s)	1318, 1702
BstPI	GGTNACC	1 cut(s)	1769
BstSCI	CCNGG	2 cut(s)	1504, 1650
BstSFI	CTRYAG	3 cut(s)	495, 1632, 2006
BstSLI	GKGCMC	2 cut(s)	39, 2174
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	8 cut(s)	481, 756, 1182, 1312, 1369, 1459, 1927, 2020
BstV2I	GAAGAC	1 cut(s)	1854
BstX2I	RGATCY	9 cut(s)	133, 322, 718, 919, 1066, 1105, 1195, 1568, 2319
BstXI	CCANNNNNNTGG	2 cut(s)	58, 319
BstYI	RGATCY	9 cut(s)	133, 322, 718, 919, 1066, 1105, 1195, 1568, 2319
Bsu36I	CCTNAGG	1 cut(s)	1881
BsuI	GTATCC	1 cut(s)	1882
BsuRI	GGCC	6 cut(s)	109, 695, 913, 1179, 2172, 2421
BtgI	CCRYGG	1 cut(s)	2174
BtgZI	GCGATG	2 cut(s)	390, 585
BtsCI	GGATG	3 cut(s)	256, 1919, 2128
BtsI	GCAGTG	1 cut(s)	2003
BveI	ACCTGC	1 cut(s)	1528
Cac8I	GCNNGC	7 cut(s)	340, 736, 946, 1316, 1704, 1848, 2423
CaiI	CAGNNNCTG	1 cut(s)	1651
CciI	TCATGA	1 cut(s)	1015
CfoI	GCGC	2 cut(s)	155, 2013
Cfr10I	RCCGGY	2 cut(s)	1175, 1276
Cfr13I	GGNCC	6 cut(s)	107, 1178, 1648, 2170, 2171, 2419
CseI	GACGC	1 cut(s)	1852
Csp6I	GTAC	5 cut(s)	555, 678, 1714, 2043, 2463
CspAI	ACCGGT	1 cut(s)	1276
CviAII	CATG	9 cut(s)	936, 1016, 1040, 1250, 1315, 1334, 1361, 1520, 1699
CviQI	GTAC	5 cut(s)	555, 678, 1714, 2043, 2463
DraI	TTTAAA	1 cut(s)	1936
EaeI	YGGCCR	1 cut(s)	693
Eam1104I	CTCTTC	7 cut(s)	201, 1182, 1404, 1833, 2015, 2104, 2205
EarI	CTCTTC	7 cut(s)	201, 1182, 1404, 1833, 2015, 2104, 2205
EciI	GGCGGA	1 cut(s)	1810
Eco130I	CCWWGG	5 cut(s)	51, 410, 605, 806, 908
Eco24I	GRGCYC	1 cut(s)	2174
Eco47I	GGWCC	1 cut(s)	1648
Eco57I	CTGAAG	1 cut(s)	177
Eco81I	CCTNAGG	1 cut(s)	1881
Eco88I	CYCGRG	3 cut(s)	258, 459, 654
Eco91I	GGTNACC	1 cut(s)	1769
EcoO109I	RGGNCCY	3 cut(s)	1648, 2170, 2419
EcoO65I	GGTNACC	1 cut(s)	1769
EcoRII	CCWGG	2 cut(s)	1504, 1650
EcoT14I	CCWWGG	5 cut(s)	51, 410, 605, 806, 908
EcoT22I	ATGCAT	2 cut(s)	941, 2157
EcoT38I	GRGCYC	1 cut(s)	2174
ErhI	CCWWGG	5 cut(s)	51, 410, 605, 806, 908
Esp3I	CGTCTC	1 cut(s)	1835
FaeI	CATG	9 cut(s)	939, 1019, 1043, 1253, 1318, 1337, 1364, 1523, 1702
FalI	AAGNNNNNCTT	6 cut(s)	87, 119, 1830, 1862, 1980, 2012
FatI	CATG	9 cut(s)	935, 1015, 1039, 1249, 1314, 1333, 1360, 1519, 1698
FauI	CCCGC	2 cut(s)	63, 1157
FauNDI	CATATG	1 cut(s)	2187
FbaI	TGATCA	1 cut(s)	2182
Fnu4HI	GCNGC	9 cut(s)	151, 495, 745, 1171, 1301, 1358, 1473, 1941, 2009
FokI	GGATG	3 cut(s)	263, 1906, 2135
FriOI	GRGCYC	1 cut(s)	2174
Fsp4HI	GCNGC	9 cut(s)	151, 495, 745, 1171, 1301, 1358, 1473, 1941, 2009
FspBI	CTAG	7 cut(s)	111, 411, 606, 716, 807, 917, 2481
GlaI	GCGC	2 cut(s)	154, 2012
GluI	GCNGC	9 cut(s)	151, 495, 745, 1171, 1301, 1358, 1473, 1941, 2009
HaeIII	GGCC	6 cut(s)	109, 695, 913, 1179, 2172, 2421
HapII	CCGG	3 cut(s)	21, 1176, 1277
HgaI	GACGC	1 cut(s)	1852
HhaI	GCGC	2 cut(s)	155, 2013
Hin1I	GRCGYC	1 cut(s)	1993
Hin1II	CATG	9 cut(s)	939, 1019, 1043, 1253, 1318, 1337, 1364, 1523, 1702
Hin6I	GCGC	2 cut(s)	153, 2011
HinP1I	GCGC	2 cut(s)	153, 2011
HincII	GTYRAC	2 cut(s)	301, 502
HindII	GTYRAC	2 cut(s)	301, 502
HinfI	GANTC	9 cut(s)	7, 17, 47, 140, 162, 452, 523, 932, 2096
HpaII	CCGG	3 cut(s)	21, 1176, 1277
HphI	GGTGA	3 cut(s)	104, 229, 1781
Hpy166II	GTNNAC	7 cut(s)	301, 502, 999, 1484, 1716, 1753, 2407
Hpy188III	TCNNGA	8 cut(s)	21, 137, 258, 459, 654, 1016, 1146, 2369
Hpy8I	GTNNAC	7 cut(s)	301, 502, 999, 1484, 1716, 1753, 2407
HpyAV	CCTTC	4 cut(s)	152, 1207, 1435, 1746
HpyCH4IV	ACGT	2 cut(s)	1432, 1993
HpySE526I	ACGT	2 cut(s)	1432, 1993
Hsp92I	GRCGYC	1 cut(s)	1993
Hsp92II	CATG	9 cut(s)	939, 1019, 1043, 1253, 1318, 1337, 1364, 1523, 1702
HspAI	GCGC	2 cut(s)	153, 2011
Kpn2I	TCCGGA	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	2182
LguI	GCTCTTC	1 cut(s)	1404
LmnI	GCTCC	2 cut(s)	1167, 1480
Lsp1109I	GCAGC	8 cut(s)	481, 756, 1182, 1312, 1369, 1459, 1927, 2020
LweI	GCATC	8 cut(s)	117, 241, 325, 637, 721, 1820, 2142, 2164
MaeI	CTAG	7 cut(s)	111, 411, 606, 716, 807, 917, 2481
MaeII	ACGT	2 cut(s)	1432, 1993
MaeIII	GTNAC	7 cut(s)	235, 315, 421, 616, 817, 1769, 2411
MfeI	CAATTG	2 cut(s)	291, 2434
MflI	RGATCY	9 cut(s)	133, 322, 718, 919, 1066, 1105, 1195, 1568, 2319
MhlI	GDGCHC	2 cut(s)	39, 2174
MlsI	TGGCCA	1 cut(s)	695
MluNI	TGGCCA	1 cut(s)	695
MlyI	GAGTC	2 cut(s)	926, 2090
MmeI	TCCRAC	4 cut(s)	1044, 1313, 1944, 2316
Mox20I	TGGCCA	1 cut(s)	695
Mph1103I	ATGCAT	2 cut(s)	941, 2157
MroI	TCCGGA	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	1971
MscI	TGGCCA	1 cut(s)	695
MseI	TTAA	5 cut(s)	123, 924, 1139, 1935, 2280
MslI	CAYNNNNRTG	3 cut(s)	1044, 1346, 1373
Msp20I	TGGCCA	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	3 cut(s)	21, 1176, 1277
MspR9I	CCNGG	2 cut(s)	1506, 1652
MunI	CAATTG	2 cut(s)	291, 2434
Mva1269I	GAATGC	5 cut(s)	1031, 1051, 1166, 1543, 2448
MvaI	CCWGG	2 cut(s)	1506, 1652
MvnI	CGCG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	2187
NlaIII	CATG	9 cut(s)	939, 1019, 1043, 1253, 1318, 1337, 1364, 1523, 1702
NlaIV	GGNNCC	5 cut(s)	36, 231, 627, 2171, 2172
NmuCI	GTSAC	4 cut(s)	235, 315, 616, 1769
NsiI	ATGCAT	2 cut(s)	941, 2157
NspI	RCATGY	2 cut(s)	1318, 1702
NspV	TTCGAA	1 cut(s)	2029
PaeI	GCATGC	1 cut(s)	1318
PaeR7I	CTCGAG	3 cut(s)	258, 459, 654
PagI	TCATGA	1 cut(s)	1015
PaqCI	CACCTGC	1 cut(s)	1528
PasI	CCCWGGG	1 cut(s)	1505
PciSI	GCTCTTC	1 cut(s)	1404
PctI	GAATGC	5 cut(s)	1031, 1051, 1166, 1543, 2448
PdmI	GAANNNNTTC	1 cut(s)	1971
PfeI	GAWTC	7 cut(s)	7, 17, 47, 140, 162, 452, 523
PinAI	ACCGGT	1 cut(s)	1276
PkrI	GCNGC	9 cut(s)	152, 496, 746, 1172, 1302, 1359, 1474, 1942, 2010
PleI	GAGTC	2 cut(s)	926, 2090
PpsI	GAGTC	2 cut(s)	926, 2090
PpuMI	RGGWCCY	1 cut(s)	1648
PsiI	TTATAA	1 cut(s)	1122
Psp5II	RGGWCCY	1 cut(s)	1648
Psp6I	CCWGG	2 cut(s)	1504, 1650
PspEI	GGTNACC	1 cut(s)	1769
PspGI	CCWGG	2 cut(s)	1504, 1650
PspN4I	GGNNCC	5 cut(s)	36, 231, 627, 2171, 2172
PspOMI	GGGCCC	1 cut(s)	2170
PspPI	GGNCC	6 cut(s)	107, 1178, 1648, 2170, 2171, 2419
PspPPI	RGGWCCY	1 cut(s)	1648
PstI	CTGCAG	2 cut(s)	499, 2010
PstNI	CAGNNNCTG	1 cut(s)	1651
PsuI	RGATCY	9 cut(s)	133, 322, 718, 919, 1066, 1105, 1195, 1568, 2319
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	5 cut(s)	556, 679, 1715, 2044, 2464
RsaNI	GTAC	5 cut(s)	555, 678, 1714, 2043, 2463
RseI	CAYNNNNRTG	3 cut(s)	1044, 1346, 1373
SapI	GCTCTTC	1 cut(s)	1404
SaqAI	TTAA	5 cut(s)	123, 924, 1139, 1935, 2280
SatI	GCNGC	9 cut(s)	151, 495, 745, 1171, 1301, 1358, 1473, 1941, 2009
Sau96I	GGNCC	6 cut(s)	107, 1178, 1648, 2170, 2171, 2419
SchI	GAGTC	2 cut(s)	926, 2090
ScrFI	CCNGG	2 cut(s)	1506, 1652
SduI	GDGCHC	2 cut(s)	39, 2174
SfaNI	GCATC	8 cut(s)	117, 241, 325, 637, 721, 1820, 2142, 2164
SfcI	CTRYAG	3 cut(s)	495, 1632, 2006
Sfr274I	CTCGAG	3 cut(s)	258, 459, 654
SfuI	TTCGAA	1 cut(s)	2029
SinI	GGWCC	1 cut(s)	1648
SlaI	CTCGAG	3 cut(s)	258, 459, 654
SmiMI	CAYNNNNRTG	3 cut(s)	1044, 1346, 1373
SmlI	CTYRAG	4 cut(s)	258, 459, 654, 855
SmoI	CTYRAG	4 cut(s)	258, 459, 654, 855
SphI	GCATGC	1 cut(s)	1318
SsiI	CCGC	6 cut(s)	70, 151, 296, 1164, 1779, 1821
SspMI	CTAG	7 cut(s)	111, 411, 606, 716, 807, 917, 2481
StyD4I	CCNGG	2 cut(s)	1504, 1650
StyI	CCWWGG	5 cut(s)	51, 410, 605, 806, 908
TaiI	ACGT	2 cut(s)	1435, 1996
TaqI	TCGA	7 cut(s)	15, 259, 460, 655, 1692, 2029, 2158
TatI	WGTACW	3 cut(s)	554, 677, 2042
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	7 cut(s)	7, 17, 47, 140, 162, 452, 523
Tru1I	TTAA	5 cut(s)	123, 924, 1139, 1935, 2280
Tru9I	TTAA	5 cut(s)	123, 924, 1139, 1935, 2280
TseFI	GTSAC	4 cut(s)	235, 315, 616, 1769
TseI	GCWGC	8 cut(s)	494, 744, 1170, 1300, 1357, 1472, 1940, 2008
Tsp45I	GTSAC	4 cut(s)	235, 315, 616, 1769
TspDTI	ATGAA	8 cut(s)	114, 219, 1235, 1509, 1742, 1854, 2067, 2303
TspGWI	ACGGA	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	1648
XapI	RAATTY	3 cut(s)	985, 2245, 2363
XceI	RCATGY	2 cut(s)	1318, 1702
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1037, 1206, 1622
XhoI	CTCGAG	3 cut(s)	258, 459, 654
XmaJI	CCTAGG	3 cut(s)	410, 605, 806
XmnI	GAANNNNTTC	1 cut(s)	1971
XspI	CTAG	7 cut(s)	111, 411, 606, 716, 807, 917, 2481
ZraI	GACGTC	1 cut(s)	1994
Zsp2I	ATGCAT	2 cut(s)	941, 2157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.