Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286097.1

Orthogroup ID

OG0009181

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 860

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

gaattagtaagaaacaatccagtggtcaatttcaactcaatgatgaagagatgtctgaaattactgaggtgcctgtcacctccgatttggatgcttctcgagctggaaaagctttgagaagtacattcccaattgcggtcaaccctattcccaagtcactggatctcaacaatgatgcgtgcattgccaagaatagggttcagaatggcagtcaggaatgctctaagagttcagaaaagaccacattgcgtggggatcaagttactgagatgcataaaaactcagatttggattcttctcgagtgggaaaatctgtaagaaacacaataccagctgcggtcaaccctattcctaagccactgaatctcaaaactgatgtgtgcattgctgacagtacaattcagaatggcagtcagcaatgttctaaagaaaagaccacatcgcctagggatcaagtgactgaggtgcctaaaacctctgatttagatgcttctcgagtgggattatctgcaagaagtacaattccagttgtggccaaccctattcctaagccactagatctcaatactgatgcgtgcattggcagcagtatggttcaaaatggcagtcagcaatgctctcagagttcagaaaagaccacgttgcctagggatcaagttactgaggtgcctaaaacttctgatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

24.34

Weight (kDa)

5.99

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05240 AT5G05240
fragaria_vesca	FvH4_7g25930 FvH4_7g25930 FvH4_7g25930
malus_domestica	MD01G1167700.v1.1 MD07G1233700.v1.1
prunus_persica	Prupe.2G264100_v2.0.a1
pyrus_communis	pycom01g18070 pycom07g21150
rosa_chinensis	RchiOBHm_Chr1g0372301
rosa_laevigata	RLG00000026911
rosa_multiflora	Rmu_co8286097.1_g000001 Rmu_sc0001755.1_g000013 Rmu_sc0010007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285080
rosa_rugosa	Rorug01G0370800
rosa_samantha	Rh1AG379200 Rh1BG342600 Rh1CG356300 Rh1DG374000
rosa_wichuraiana	Rw1G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	69, 465, 666
AciI	CCGC	2 cut(s)	136, 337
AclWI	GGATC	4 cut(s)	170, 263, 458, 659
AcoI	YGGCCR	1 cut(s)	533
AfaI	GTAC	3 cut(s)	123, 396, 519
AfiI	CCNNNNNNNGG	2 cut(s)	135, 194
AgsI	TTSAA	2 cut(s)	34, 598
AluBI	AGCT	3 cut(s)	103, 112, 334
AluI	AGCT	3 cut(s)	103, 112, 334
AlwI	GGATC	4 cut(s)	170, 263, 458, 659
Ama87I	CYCGRG	3 cut(s)	98, 299, 494
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	2 cut(s)	334, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
AspA2I	CCTAGG	2 cut(s)	445, 646
AsuHPI	GGTGA	1 cut(s)	69
AvaI	CYCGRG	3 cut(s)	98, 299, 494
AvrII	CCTAGG	2 cut(s)	445, 646
BalI	TGGCCA	1 cut(s)	535
BanI	GGYRCC	3 cut(s)	69, 465, 666
BbvI	GCAGC	2 cut(s)	321, 596
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BfaI	CTAG	3 cut(s)	446, 556, 647
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	2 cut(s)	335, 585
BlnI	CCTAGG	2 cut(s)	445, 646
BlsI	GCNGC	2 cut(s)	336, 586
BmeT110I	CYCGRG	3 cut(s)	98, 299, 494
BmiI	GGNNCC	3 cut(s)	71, 467, 668
BmsI	GCATC	5 cut(s)	81, 165, 260, 477, 561
Bpu10I	CCTNAGC	2 cut(s)	353, 548
BsaJI	CCNNGG	2 cut(s)	445, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 194
Bse1I	ACTGG	3 cut(s)	20, 164, 526
Bse3DI	GCAATG	5 cut(s)	182, 244, 383, 424, 619
BseDI	CCNNGG	2 cut(s)	445, 646
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	135, 194
BseMI	GCAATG	5 cut(s)	182, 244, 383, 424, 619
BseMII	CTCAG	6 cut(s)	56, 257, 296, 452, 634, 653
BseNI	ACTGG	3 cut(s)	20, 164, 526
BseXI	GCAGC	2 cut(s)	321, 596
BshFI	GGCC	1 cut(s)	535
BshNI	GGYRCC	3 cut(s)	69, 465, 666
BsiHKCI	CYCGRG	3 cut(s)	98, 299, 494
BslI	CCNNNNNNNGG	2 cut(s)	135, 194
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	535
BsoBI	CYCGRG	3 cut(s)	98, 299, 494
Bsp143I	GATC	5 cut(s)	162, 255, 450, 558, 651
BspACI	CCGC	2 cut(s)	136, 337
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	6 cut(s)	57, 258, 295, 453, 633, 654
BspLI	GGNNCC	3 cut(s)	71, 467, 668
BspPI	GGATC	4 cut(s)	170, 263, 458, 659
BspT107I	GGYRCC	3 cut(s)	69, 465, 666
BsrDI	GCAATG	5 cut(s)	182, 244, 383, 424, 619
BsrI	ACTGG	3 cut(s)	20, 164, 526
BssECI	CCNNGG	2 cut(s)	445, 646
BssMI	GATC	5 cut(s)	162, 255, 450, 558, 651
BssT1I	CCWWGG	2 cut(s)	445, 646
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	180, 576
BstDEI	CTNAG	9 cut(s)	65, 224, 266, 282, 353, 461, 548, 620, 662
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	6 cut(s)	165, 258, 453, 561, 654, 684
BstMBI	GATC	5 cut(s)	162, 255, 450, 558, 651
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 109, 184, 584
BstV1I	GCAGC	2 cut(s)	321, 596
BstX2I	RGATCY	2 cut(s)	162, 558
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	2 cut(s)	162, 558
BsuRI	GGCC	1 cut(s)	535
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	27, 157, 358
Cac8I	GCNNGC	2 cut(s)	180, 576
Csp6I	GTAC	3 cut(s)	122, 395, 518
CviJI	RGCY	6 cut(s)	103, 112, 334, 357, 535, 552
CviKI_1	RGCY	6 cut(s)	103, 112, 334, 357, 535, 552
CviQI	GTAC	3 cut(s)	122, 395, 518
DdeI	CTNAG	9 cut(s)	65, 224, 266, 282, 353, 461, 548, 620, 662
DpnI	GATC	6 cut(s)	164, 257, 452, 560, 653, 683
DpnII	GATC	5 cut(s)	162, 255, 450, 558, 651
EaeI	YGGCCR	1 cut(s)	533
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	445, 646
Eco88I	CYCGRG	3 cut(s)	98, 299, 494
EcoT14I	CCWWGG	2 cut(s)	445, 646
EcoT22I	ATGCAT	1 cut(s)	275
ErhI	CCWWGG	2 cut(s)	445, 646
FaiI	YATR	2 cut(s)	275, 592
Fnu4HI	GCNGC	2 cut(s)	335, 585
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	335, 585
FspBI	CTAG	3 cut(s)	446, 556, 647
GluI	GCNGC	2 cut(s)	335, 585
HaeIII	GGCC	1 cut(s)	535
HincII	GTYRAC	2 cut(s)	141, 342
HindII	GTYRAC	2 cut(s)	141, 342
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	292, 363
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	141, 342
Hpy188III	TCNNGA	4 cut(s)	98, 214, 299, 494
Hpy8I	GTNNAC	2 cut(s)	141, 342
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	5 cut(s)	182, 273, 383, 511, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 109, 184, 584
HpyF3I	CTNAG	9 cut(s)	65, 224, 266, 282, 353, 461, 548, 620, 662
HpySE526I	ACGT	1 cut(s)	640
Kzo9I	GATC	5 cut(s)	162, 255, 450, 558, 651
LpnPI	CCDG	7 cut(s)	33, 86, 89, 145, 199, 344, 539
Lsp1109I	GCAGC	2 cut(s)	321, 596
LweI	GCATC	5 cut(s)	81, 165, 260, 477, 561
MaeI	CTAG	3 cut(s)	446, 556, 647
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	5 cut(s)	75, 155, 261, 456, 657
MalI	GATC	6 cut(s)	164, 257, 452, 560, 653, 683
MboI	GATC	5 cut(s)	162, 255, 450, 558, 651
MboII	GAAGA	2 cut(s)	58, 287
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	2 cut(s)	162, 558
MlsI	TGGCCA	1 cut(s)	535
MluCI	AATT	6 cut(s)	2, 28, 59, 131, 398, 521
MluNI	TGGCCA	1 cut(s)	535
MnlI	CCTC	5 cut(s)	60, 90, 456, 486, 657
Mox20I	TGGCCA	1 cut(s)	535
Mph1103I	ATGCAT	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	535
Msp20I	TGGCCA	1 cut(s)	535
MspA1I	CMGCKG	1 cut(s)	334
MunI	CAATTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	4 cut(s)	100, 109, 184, 584
NdeII	GATC	5 cut(s)	162, 255, 450, 558, 651
NlaIV	GGNNCC	3 cut(s)	71, 467, 668
NmuCI	GTSAC	3 cut(s)	75, 155, 456
NsiI	ATGCAT	1 cut(s)	275
PaeR7I	CTCGAG	3 cut(s)	98, 299, 494
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	292, 363
PkrI	GCNGC	2 cut(s)	336, 586
PspN4I	GGNNCC	3 cut(s)	71, 467, 668
PsuI	RGATCY	2 cut(s)	162, 558
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	123, 396, 519
RsaNI	GTAC	3 cut(s)	122, 395, 518
SatI	GCNGC	2 cut(s)	335, 585
Sau3AI	GATC	5 cut(s)	162, 255, 450, 558, 651
SetI	ASST	9 cut(s)	71, 82, 105, 114, 336, 467, 478, 643, 668
SfaNI	GCATC	5 cut(s)	81, 165, 260, 477, 561
Sfr274I	CTCGAG	3 cut(s)	98, 299, 494
SlaI	CTCGAG	3 cut(s)	98, 299, 494
SmlI	CTYRAG	3 cut(s)	98, 299, 494
SmoI	CTYRAG	3 cut(s)	98, 299, 494
Sse9I	AATT	6 cut(s)	2, 28, 59, 131, 398, 521
SsiI	CCGC	2 cut(s)	136, 337
SspMI	CTAG	3 cut(s)	446, 556, 647
StyI	CCWWGG	2 cut(s)	445, 646
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	3 cut(s)	99, 300, 495
TasI	AATT	6 cut(s)	2, 28, 59, 131, 398, 521
TatI	WGTACW	3 cut(s)	121, 394, 517
TfiI	GAWTC	2 cut(s)	292, 363
TscAI	CASTG	3 cut(s)	27, 164, 365
TseFI	GTSAC	3 cut(s)	75, 155, 456
TseI	GCWGC	2 cut(s)	334, 584
Tsp45I	GTSAC	3 cut(s)	75, 155, 456
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	3 cut(s)	27, 164, 365
XhoI	CTCGAG	3 cut(s)	98, 299, 494
XmaJI	CCTAGG	2 cut(s)	445, 646
XspI	CTAG	3 cut(s)	446, 556, 647
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.