Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014295

Physical Location & Seq

Genomic Coordinates Reverse (-)

2116509 .. 2119640

Gene Structure 3132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGCCGTCACAAGATGATGTTCAAAATCTTCCAATCGATATCACCTTCTCTCGTCTCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAGGAAGAGGGTTGCTGTGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTGCCTAAAGAGATCGATCCATTCTTTCAAACCCTAGATCCTGAAGTGATCGGTTACTTGGAGGTCAAAAAGGTGTATGAGATTCTCCTGAAGACAACTCCGGAAAGCCGCAACATCTTTGGTCGACTTTCGGGTGCTTCTGGTGTTTGGGAAGCAATTGTTCGTGCGTTTGAAAAAGATCACATTTATCTTGGGGAGGCAGCTCAGATAATAATTCAGAATGTTAATTACGAAATCCCTTATCTGAAAAAGCAAGTGCAAAAGGTTCAGCAACAAATGACAGAACTTGATCGTAAAGAAGCTGATATCAAAAGGAGCGTTGCACTCTCAGCAACAAAATACGAGGATGCTTGCCGAGAGCTTGGATTGCAGGGAAACAATGTGAGGCGTGAGCTTTTGGAGACTGCGAGTTCGCTTCCTAGTACCTTTAGCAAGATTCTGGAAGTTATCAACAGTGACTCAGTAACAGGGGCAATGGAGTACTACTCTGCCTATGTTCAAGATGTTCATACTGAGAAAGATAAGCCTTTGAGGATTGTCTTACAAAACCTGAAATACATTCGTGAAAACCCTCCATCATTAAGCGTTTTTGGGGACTCTGAAGGTCTCGATGCTGATAATATTCAGTCATCTGAGAATGCAAATGGTACAGATGCGGCTGCAGACAGCATTGATTGGGATATTACGGTTGAGACTCCTGAGATAGATTGGGATGTTAGTATGGTAGAAGAAGTTGATAGTGGAAATGATCTAGGTTCATATGAAATTGTCAATGCCAGCGATATTCCTGAGAATTCTCCATTTAAAGTGGAAGAAAGCCAAGGCCTTGAGGTTGATGTTTCTGAGATTTCTTGGGATGTAAGTGTTGAAACACCTCAGGTAGAAGAAATAGGTGATTCAGCTTTGCTAGAATCAAACCAGACACAGTTGACAGATTCTACAACTCAAGTCTTAGGGAGTGGAGGAGAGAGGAGCCAGCTGTTGGAGACAGAATATAGGAATAAGATCCTTGATGATTTGTATGAGGTCAAGGCATTTTTGAACCAGCGTTTGATAGAACTGAGAAATGAAGATACGCTGTCCTTGCAACACCACGTGCAAGCAGTCTCCCCCATGGTTCTTCAGCAGTATTCTCCTGAAACCATAGAGCCAATGGTGGTTGACATCTCCATGGCCATTTCATTGCTAACAAACAAGAAATCTCGGGATCTGATCATGATCCTCAACTCCAAAAGATTCCTAGATAGGCTTGTTTCAGAGCTGGAGGAGAAGAAGCACCGTGAAGTGAAGTTAAGAGAGAGCTTGAAAGATGTGGGTAGAAGACGCATGGAGCTGCAGAATTCACTTTCTGCTATATGGCCAAAACAGGAAGCTGCACTTTCGAAAACAAGAGAACTCAAGGAGCTATGTGAGACAAGTCTCTCTTCCATGTTTGATGGAAGACCTGTGAATATAAGAGGAGAGATCAATACATTGTTGAACGCTGGGGTTTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0005575 GO:0005623 GO:0007346 GO:0008150 GO:0012505 GO:0019220 GO:0019222 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0080090 GO:1904029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF773

Protein Analysis

549

Amino Acids

62.13

Weight (kDa)

4.72

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDK5RAP3	PF05600	8 - 537	1.5e-170	CDK5 regulatory subunit-associated protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06830
fragaria_vesca	FvH4_6g22670 FvH4_6g22670
malus_domestica	MD14G1060600.v1.1
prunus_persica	Prupe.7G073900_v2.0.a1 Prupe.7G073900_v2.0.a1
pyrus_communis	pycom14g04910
rosa_chinensis	RchiOBHm_Chr3g0480241
rosa_laevigata	RLG00000023508
rosa_multiflora	Rmu_sc0006148.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401680
rosa_rugosa	Rorug03G0181400
rosa_samantha	Rh3AG233100 Rh3BG265700 Rh3CG263000 Rh3DG258900
rosa_wichuraiana	Rw3G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1132
AccI	GTMKAC	1 cut(s)	274
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	3 cut(s)	92, 259, 806
AclWI	GGATC	6 cut(s)	81, 161, 182, 1150, 1363, 1365
AcoI	YGGCCR	2 cut(s)	1323, 1508
AcsI	RAATTY	3 cut(s)	84, 943, 1489
AcuI	CTGAAG	4 cut(s)	213, 260, 771, 1256
AcvI	CACGTG	1 cut(s)	1246
AdeI	CACNNNGTG	1 cut(s)	1246
AfaI	GTAC	3 cut(s)	574, 632, 799
AfiI	CCNNNNNNNGG	1 cut(s)	1132
AgsI	TTSAA	8 cut(s)	23, 179, 323, 650, 1019, 1192, 1456, 1630
Alw26I	GTCTC	8 cut(s)	59, 545, 761, 836, 1130, 1261, 1556, 1574
AlwI	GGATC	6 cut(s)	81, 161, 182, 1150, 1363, 1365
Ama87I	CYCGRG	1 cut(s)	1353
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	3 cut(s)	973, 1323, 1508
ApeKI	GCWGC	4 cut(s)	350, 809, 1483, 1523
ApoI	RAATTY	3 cut(s)	84, 943, 1489
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
AsuHPI	GGTGA	2 cut(s)	34, 1055
AsuII	TTCGAA	1 cut(s)	1532
AvaI	CYCGRG	1 cut(s)	1353
AxyI	CCTNAGG	1 cut(s)	1026
BalI	TGGCCA	2 cut(s)	1325, 1510
BbrPI	CACGTG	1 cut(s)	1246
BbsI	GAAGAC	3 cut(s)	248, 1477, 1597
BbvI	GCAGC	4 cut(s)	362, 796, 1470, 1510
BccI	CCATC	2 cut(s)	733, 1580
BclI	TGATCA	2 cut(s)	117, 1362
BcoDI	GTCTC	8 cut(s)	59, 545, 761, 836, 1130, 1261, 1556, 1574
BfaI	CTAG	5 cut(s)	185, 570, 902, 1058, 1391
BfmI	CTRYAG	2 cut(s)	810, 1484
BisI	GCNGC	6 cut(s)	259, 351, 807, 810, 1484, 1524
BlsI	GCNGC	6 cut(s)	260, 352, 808, 811, 1485, 1525
BmcAI	AGTACT	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	1353
BmiI	GGNNCC	1 cut(s)	1124
BmsI	GCATC	3 cut(s)	487, 751, 793
BpiI	GAAGAC	3 cut(s)	248, 1477, 1597
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
BpmI	CTGGAG	1 cut(s)	1433
Bpu14I	TTCGAA	1 cut(s)	1532
BpuEI	CTTGAG	3 cut(s)	998, 1080, 1532
Bsa29I	ATCGAT	2 cut(s)	36, 165
BsaAI	YACGTR	1 cut(s)	1246
BsaBI	GATNNNNATC	1 cut(s)	1367
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	970, 1263, 1320
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	1132
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	2 cut(s)	630, 1331
Bse8I	GATNNNNATC	1 cut(s)	1367
BseAI	TCCGGA	1 cut(s)	250
BseCI	ATCGAT	2 cut(s)	36, 165
BseDI	CCNNGG	3 cut(s)	970, 1263, 1320
BseGI	GGATG	3 cut(s)	502, 868, 1012
BseJI	GATNNNNATC	1 cut(s)	1367
BseLI	CCNNNNNNNGG	1 cut(s)	1132
BseMI	GCAATG	2 cut(s)	630, 1331
BseRI	GAGGAG	4 cut(s)	1128, 1135, 1430, 1623
BseXI	GCAGC	4 cut(s)	362, 796, 1470, 1510
BseYI	CCCAGC	1 cut(s)	1634
BsgI	GTGCAG	1 cut(s)	1509
BshFI	GGCC	3 cut(s)	975, 1325, 1510
BshVI	ATCGAT	2 cut(s)	36, 165
BsiHKCI	CYCGRG	1 cut(s)	1353
BsiSI	CCGG	2 cut(s)	89, 251
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	1 cut(s)	1132
BsmAI	GTCTC	8 cut(s)	59, 545, 761, 836, 1130, 1261, 1556, 1574
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	3 cut(s)	975, 1325, 1510
Bso31I	GGTCTC	1 cut(s)	761
BsoBI	CYCGRG	1 cut(s)	1353
Bsp119I	TTCGAA	1 cut(s)	1532
Bsp13I	TCCGGA	1 cut(s)	250
Bsp19I	CCATGG	2 cut(s)	1263, 1320
BspACI	CCGC	3 cut(s)	92, 259, 806
BspANI	GGCC	3 cut(s)	975, 1325, 1510
BspDI	ATCGAT	2 cut(s)	36, 165
BspEI	TCCGGA	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	1365
BspLI	GGNNCC	1 cut(s)	1124
BspMAI	CTGCAG	2 cut(s)	814, 1488
BspPI	GGATC	6 cut(s)	81, 161, 182, 1150, 1363, 1365
BspT104I	TTCGAA	1 cut(s)	1532
BspTNI	GGTCTC	1 cut(s)	761
BsrDI	GCAATG	2 cut(s)	630, 1331
BssECI	CCNNGG	3 cut(s)	970, 1263, 1320
BssT1I	CCWWGG	3 cut(s)	970, 1263, 1320
Bst4CI	ACNGT	4 cut(s)	605, 838, 1077, 1430
Bst6I	CTCTTC	4 cut(s)	74, 98, 151, 1579
BstBAI	YACGTR	1 cut(s)	1246
BstBI	TTCGAA	1 cut(s)	1532
BstC8I	GCNNGC	4 cut(s)	502, 928, 1127, 1251
BstDSI	CCRYGG	2 cut(s)	1263, 1320
BstF5I	GGATG	3 cut(s)	502, 868, 1012
BstMAI	GTCTC	8 cut(s)	59, 545, 761, 836, 1130, 1261, 1556, 1574
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 517, 1234
BstSFI	CTRYAG	2 cut(s)	810, 1484
BstV1I	GCAGC	4 cut(s)	362, 796, 1470, 1510
BstV2I	GAAGAC	3 cut(s)	248, 1477, 1597
BstX2I	RGATCY	3 cut(s)	187, 1155, 1357
BstYI	RGATCY	3 cut(s)	187, 1155, 1357
Bsu15I	ATCGAT	2 cut(s)	36, 165
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuRI	GGCC	3 cut(s)	975, 1325, 1510
BsuTUI	ATCGAT	2 cut(s)	36, 165
BtgI	CCRYGG	2 cut(s)	1263, 1320
BtsCI	GGATG	3 cut(s)	502, 868, 1012
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	4 cut(s)	502, 928, 1127, 1251
CciI	TCATGA	1 cut(s)	1365
ClaI	ATCGAT	2 cut(s)	36, 165
CseI	GACGC	1 cut(s)	1482
Csp6I	GTAC	3 cut(s)	573, 631, 798
CviAII	CATG	5 cut(s)	1264, 1321, 1366, 1477, 1579
CviQI	GTAC	3 cut(s)	573, 631, 798
DraI	TTTAAA	1 cut(s)	955
DraIII	CACNNNGTG	1 cut(s)	1246
EaeI	YGGCCR	2 cut(s)	1323, 1508
Eam1104I	CTCTTC	4 cut(s)	74, 98, 151, 1579
EarI	CTCTTC	4 cut(s)	74, 98, 151, 1579
EciI	GGCGGA	1 cut(s)	107
Eco130I	CCWWGG	3 cut(s)	970, 1263, 1320
Eco147I	AGGCCT	1 cut(s)	975
Eco31I	GGTCTC	1 cut(s)	761
Eco32I	GATATC	2 cut(s)	40, 457
Eco57I	CTGAAG	4 cut(s)	213, 260, 771, 1256
Eco72I	CACGTG	1 cut(s)	1246
Eco81I	CCTNAGG	1 cut(s)	1026
Eco88I	CYCGRG	1 cut(s)	1353
EcoRI	GAATTC	3 cut(s)	84, 943, 1489
EcoRV	GATATC	2 cut(s)	40, 457
EcoT14I	CCWWGG	3 cut(s)	970, 1263, 1320
ErhI	CCWWGG	3 cut(s)	970, 1263, 1320
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	5 cut(s)	1267, 1324, 1369, 1480, 1582
FalI	AAGNNNNNCTT	4 cut(s)	1512, 1544, 1558, 1590
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	5 cut(s)	1263, 1320, 1365, 1476, 1578
FauNDI	CATATG	1 cut(s)	910
FbaI	TGATCA	2 cut(s)	117, 1362
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	6 cut(s)	259, 351, 807, 810, 1484, 1524
FokI	GGATG	3 cut(s)	509, 875, 1019
Fsp4HI	GCNGC	6 cut(s)	259, 351, 807, 810, 1484, 1524
FspBI	CTAG	5 cut(s)	185, 570, 902, 1058, 1391
GluI	GCNGC	6 cut(s)	259, 351, 807, 810, 1484, 1524
GsaI	CCCAGC	1 cut(s)	1638
GsuI	CTGGAG	1 cut(s)	1433
HaeIII	GGCC	3 cut(s)	975, 1325, 1510
HapII	CCGG	2 cut(s)	89, 251
HgaI	GACGC	1 cut(s)	1482
Hin1II	CATG	5 cut(s)	1267, 1324, 1369, 1480, 1582
HincII	GTYRAC	3 cut(s)	275, 1080, 1312
HindII	GTYRAC	3 cut(s)	275, 1080, 1312
HpaII	CCGG	2 cut(s)	89, 251
HphI	GGTGA	2 cut(s)	34, 1055
Hpy166II	GTNNAC	3 cut(s)	275, 1080, 1312
Hpy8I	GTNNAC	3 cut(s)	275, 1080, 1312
HpyAV	CCTTC	2 cut(s)	55, 746
HpyCH4III	ACNGT	4 cut(s)	605, 838, 1077, 1430
HpyCH4IV	ACGT	1 cut(s)	1245
HpyCH4V	TGCA	9 cut(s)	409, 473, 520, 791, 812, 1237, 1249, 1486, 1526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 517, 1234
HpySE526I	ACGT	1 cut(s)	1245
Hsp92II	CATG	5 cut(s)	1267, 1324, 1369, 1480, 1582
Kpn2I	TCCGGA	1 cut(s)	250
Ksp22I	TGATCA	2 cut(s)	117, 1362
LmnI	GCTCC	4 cut(s)	465, 1122, 1480, 1552
Lsp1109I	GCAGC	4 cut(s)	362, 796, 1470, 1510
LweI	GCATC	3 cut(s)	487, 751, 793
MaeI	CTAG	5 cut(s)	185, 570, 902, 1058, 1391
MaeII	ACGT	1 cut(s)	1245
MaeIII	GTNAC	4 cut(s)	6, 203, 605, 613
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	3 cut(s)	187, 1155, 1357
MlsI	TGGCCA	2 cut(s)	1325, 1510
MluCI	AATT	7 cut(s)	84, 306, 363, 376, 915, 943, 1489
MluNI	TGGCCA	2 cut(s)	1325, 1510
MlyI	GAGTC	4 cut(s)	132, 602, 740, 838
MmeI	TCCRAC	1 cut(s)	1113
Mox20I	TGGCCA	2 cut(s)	1325, 1510
MroI	TCCGGA	1 cut(s)	250
MscI	TGGCCA	2 cut(s)	1325, 1510
MseI	TTAA	5 cut(s)	134, 375, 731, 954, 1442
MslI	CAYNNNNRTG	1 cut(s)	1319
Msp20I	TGGCCA	2 cut(s)	1325, 1510
MspA1I	CMGCKG	1 cut(s)	1129
MspI	CCGG	2 cut(s)	89, 251
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	793
MwoI	GCNNNNNNNGC	3 cut(s)	479, 517, 1234
NcoI	CCATGG	2 cut(s)	1263, 1320
NdeI	CATATG	1 cut(s)	910
NlaIII	CATG	5 cut(s)	1267, 1324, 1369, 1480, 1582
NlaIV	GGNNCC	1 cut(s)	1124
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	2 cut(s)	6, 605
NspV	TTCGAA	1 cut(s)	1532
PagI	TCATGA	1 cut(s)	1365
PceI	AGGCCT	1 cut(s)	975
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	6 cut(s)	232, 586, 1046, 1061, 1085, 1386
PflMI	CCANNNNNTGG	1 cut(s)	1132
PkrI	GCNGC	6 cut(s)	260, 352, 808, 811, 1485, 1525
PleI	GAGTC	4 cut(s)	131, 602, 740, 838
PmaCI	CACGTG	1 cut(s)	1246
PmlI	CACGTG	1 cut(s)	1246
PpsI	GAGTC	4 cut(s)	131, 602, 740, 838
Ppu21I	YACGTR	1 cut(s)	1246
PspCI	CACGTG	1 cut(s)	1246
PspFI	CCCAGC	1 cut(s)	1634
PspN4I	GGNNCC	1 cut(s)	1124
PstI	CTGCAG	2 cut(s)	814, 1488
PsuI	RGATCY	3 cut(s)	187, 1155, 1357
PvuII	CAGCTG	1 cut(s)	1129
RsaI	GTAC	3 cut(s)	574, 632, 799
RsaNI	GTAC	3 cut(s)	573, 631, 798
RseI	CAYNNNNRTG	1 cut(s)	1319
SalI	GTCGAC	1 cut(s)	273
SaqAI	TTAA	5 cut(s)	134, 375, 731, 954, 1442
SatI	GCNGC	6 cut(s)	259, 351, 807, 810, 1484, 1524
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	4 cut(s)	132, 602, 740, 838
SfaNI	GCATC	3 cut(s)	487, 751, 793
SfcI	CTRYAG	2 cut(s)	810, 1484
SfuI	TTCGAA	1 cut(s)	1532
SmiMI	CAYNNNNRTG	1 cut(s)	1319
SmlI	CTYRAG	3 cut(s)	977, 1095, 1547
SmoI	CTYRAG	3 cut(s)	977, 1095, 1547
Sse9I	AATT	7 cut(s)	84, 306, 363, 376, 915, 943, 1489
SseBI	AGGCCT	1 cut(s)	975
SsiI	CCGC	3 cut(s)	92, 259, 806
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	5 cut(s)	185, 570, 902, 1058, 1391
StuI	AGGCCT	1 cut(s)	975
StyI	CCWWGG	3 cut(s)	970, 1263, 1320
TaaI	ACNGT	4 cut(s)	605, 838, 1077, 1430
TaiI	ACGT	1 cut(s)	1248
TaqI	TCGA	5 cut(s)	36, 165, 274, 759, 1532
TasI	AATT	7 cut(s)	84, 306, 363, 376, 915, 943, 1489
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	2 cut(s)	261, 809
TfiI	GAWTC	6 cut(s)	232, 586, 1046, 1061, 1085, 1386
Tru1I	TTAA	5 cut(s)	134, 375, 731, 954, 1442
Tru9I	TTAA	5 cut(s)	134, 375, 731, 954, 1442
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	6, 605
TseI	GCWGC	4 cut(s)	350, 809, 1483, 1523
Tsp45I	GTSAC	2 cut(s)	6, 605
TspDTI	ATGAA	5 cut(s)	647, 897, 927, 1233, 1320
TspRI	CASTG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	1132
XapI	RAATTY	3 cut(s)	84, 943, 1489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1300
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	5 cut(s)	185, 570, 902, 1058, 1391
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.