RLG00000023508

CDK5RAP3-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
24728168 .. 24731740
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023508

Sequence Viewer

Length: 1479 bp
ATGACATTGAACTCTTTGTTTCGATACTATTCGCACTCTGGTGGAATTGTAATGCTAGTGTTGTTAAGTTTTTGGTTTATATTTTGTGGGCAGGGTGCTTGGGAATCAATTGTGCGTGCTTTCGAGAAGGATTATATCTATCTTGGCGAAGCTGCGCAGATAATGGTTCAAAATGTGAACTATGAGATTCCGTATCAGAAAAAGCAGGTGCAGAAGATTCAGCAACAACTAGCTGAACTAGAGCACAAGGAAGCTGATATTAAGAGAACTGCAGCTCTATCGGCAGCCAAGTATGTGGAGGCTTGTCAAGAGCTTGGATTGAAGGGAAATAATGTAAGGGCGGAACTTTTAGAGACTGCAAAATCACTTCCTACCACATTCAGCAGGATATTGGAAGTGATAAATGGTGATTCTGTGTCGAGGGCTCTGGAGTATTATTCTAACTTTGTGAGAGATGCTCACACTGAAAAGGATAAAAATTTGGTTGTGTTAACAAACTTGAAAGATTTACGTGAGCATCCCCCATCATTGGATGTTTCTGTAGACTTGGAGGTTGTTGATTCTGGGAATGTTCAATCAAGCCATAATGAGTCAAACAATGTGACAGTGGATGCAGATGCTAATGCCAACAGTATAGACTGGGATTTTTCTGTGGACAGTGCTCAGATTGATTGGGATATTGGTACTGTGGAAGAAACAGAAGATGCTGGTAATGGTTTGGGCCCTTACGAAATGGTTAGTGCCAGCGAGATCTTGCAGAGTTCTCCAAATGAAGCAGCAAAATCCGATCAGGTCCCAGAGGTTTCTGTATCTGAGATATCTTGGGATATTAGTGTTGAAACTCCTCAAGTTGATGCAATTGATGATGTCAATTTGCTGAATGTTGTTGTTGACAATCAAACATCTGTTCTTCATACTTCAACTCCAACAACTGAAATCAAGGAAGGTAGGAGCCAACTTTTGGAAACAGAGTATAGGAACAAGATTCTGGATGATCTGAATGAGATCAAAGCTTTTCTAAATCAGCGGTTGGTTGAGTTGAAGAATGAAGAAACTTTGTCATTGCAACATCAAGTCCAGGCAGTTGCTCCCTTTGTGCTGCAGCAATATGCTCATGATGCCATTGAGACAATGCTATCTGATGTTTGCTTGGCCATTTCTTTGCTGACAAATAGGAAAACGCGGGACTTGATCATGATTCTCAACTCCAAAAGATTTCTAGACAGACTAGTGAGTTCATTGGAAGAAAAGAAGCATCACGAAGTGAAGTTGAAAGAGGGTTTGAAGGGCTTAGCTACCAAACGCATGGAGCTGCACAACTCGTTATCTTCTTCCTGGCCAAAGCAGGAAGCAGCTCTTGCAAAAACACGCGAGCTTAAGAAGCTGTGTGAGAGCACCCTTTCCTCCATGTTTGATGGTAGACCTGTTCATATAATTGGAGAGATCAATGCCCTTTTGAATAGTGGTGTTGCTGCATAG

Protein Analysis

493

Amino Acids

54.99

Weight (kDa)

4.88

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDK5RAP3 PF05600 32 - 480 5.8e-132 CDK5 regulatory subunit-associated protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06830
fragaria_vesca FvH4_6g22670 FvH4_6g22670
malus_domestica MD14G1060600.v1.1
prunus_persica Prupe.7G073900_v2.0.a1 Prupe.7G073900_v2.0.a1
pyrus_communis pycom14g04910
rosa_chinensis RchiOBHm_Chr3g0480241
rosa_laevigata RLG00000023508
rosa_multiflora Rmu_sc0006148.1_g000001
rosa_roxburghii Rroxscaffold_6G00401680
rosa_rugosa Rorug03G0181400
rosa_samantha Rh3AG233100 Rh3BG265700 Rh3CG263000 Rh3DG258900
rosa_wichuraiana Rw3G020940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc16I TGCGCA 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 196
AccB7I CCANNNNNTGG 1 cut(s) 961
AccI GTMKAC 2 cut(s) 543, 1420
AccII CGCG 2 cut(s) 1183, 1371
AciI CCGC 3 cut(s) 341, 1027, 1183
AcoI YGGCCR 2 cut(s) 1152, 1337
AcsI RAATTY 1 cut(s) 478
AdeI CACNNNGTG 1 cut(s) 1264
AfaI GTAC 1 cut(s) 685
AfiI CCNNNNNNNGG 2 cut(s) 529, 961
AflII CTTAAG 1 cut(s) 1376
AhlI ACTAGT 1 cut(s) 1228
AjnI CCWGG 2 cut(s) 1077, 1334
AleI CACNNNNGTG 1 cut(s) 39
Alw21I GWGCWC 3 cut(s) 246, 664, 1397
Alw26I GTCTC 2 cut(s) 347, 1121
AoxI GGCC 3 cut(s) 721, 1152, 1337
ApaI GGGCCC 1 cut(s) 725
ApeKI GCWGC 9 cut(s) 152, 272, 284, 776, 1099, 1102, 1312, 1352, 1472
ApoI RAATTY 1 cut(s) 478
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 3 cut(s) 721, 722, 793
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 725
BalI TGGCCA 2 cut(s) 1154, 1339
BanII GRGCYC 2 cut(s) 427, 725
Bbv12I GWGCWC 3 cut(s) 246, 664, 1397
BbvI GCAGC 9 cut(s) 139, 284, 296, 788, 1086, 1114, 1299, 1364, 1459
BccI CCATC 2 cut(s) 532, 1409
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 2 cut(s) 1079, 1336
BclI TGATCA 1 cut(s) 1191
BcoDI GTCTC 2 cut(s) 347, 1121
BcuI ACTAGT 1 cut(s) 1228
BfaI CTAG 5 cut(s) 56, 230, 239, 1220, 1229
BfmI CTRYAG 3 cut(s) 270, 540, 1100
BfrI CTTAAG 1 cut(s) 1376
BfuAI ACCTGC 1 cut(s) 196
BglII AGATCT 1 cut(s) 750
BisI GCNGC 9 cut(s) 153, 273, 285, 777, 1100, 1103, 1313, 1353, 1473
BlpI GCTNAGC 1 cut(s) 1291
BlsI GCNGC 9 cut(s) 154, 274, 286, 778, 1101, 1104, 1314, 1354, 1474
Bme1390I CCNGG 2 cut(s) 1079, 1336
Bme18I GGWCC 1 cut(s) 793
BmgT120I GGNCC 3 cut(s) 721, 722, 793
BmiI GGNNCC 3 cut(s) 723, 795, 953
BmrFI CCNGG 2 cut(s) 1079, 1336
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 8 cut(s) 445, 526, 601, 607, 694, 844, 1108, 1264
BmuI ACTGGG 1 cut(s) 649
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 1 cut(s) 449
Bpu1102I GCTNAGC 1 cut(s) 1291
BpuEI CTTGAG 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 512
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 961
Bse1I ACTGG 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 1061
BseBI CCWGG 2 cut(s) 1079, 1336
BseGI GGATG 4 cut(s) 517, 538, 616, 997
BseLI CCNNNNNNNGG 2 cut(s) 529, 961
BseMI GCAATG 1 cut(s) 1061
BseMII CTCAG 2 cut(s) 677, 804
BseNI ACTGG 1 cut(s) 644
BseRI GAGGAG 1 cut(s) 834
BseSI GKGCMC 1 cut(s) 725
BseXI GCAGC 9 cut(s) 139, 284, 296, 788, 1086, 1114, 1299, 1364, 1459
BsgI GTGCAG 2 cut(s) 230, 1298
Bsh1236I CGCG 2 cut(s) 1183, 1371
BshFI GGCC 3 cut(s) 723, 1154, 1339
BsiHKAI GWGCWC 3 cut(s) 246, 664, 1397
BslFI GGGAC 2 cut(s) 779, 1199
BslI CCNNNNNNNGG 2 cut(s) 529, 961
BsmAI GTCTC 2 cut(s) 347, 1121
BsmFI GGGAC 2 cut(s) 779, 1199
BsnI GGCC 3 cut(s) 723, 1154, 1339
Bsp120I GGGCCC 1 cut(s) 721
Bsp1286I GDGCHC 5 cut(s) 246, 427, 664, 725, 1397
Bsp143I GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
Bsp1720I GCTNAGC 1 cut(s) 1291
BspACI CCGC 3 cut(s) 341, 1027, 1183
BspANI GGCC 3 cut(s) 723, 1154, 1339
BspCNI CTCAG 2 cut(s) 676, 805
BspFNI CGCG 2 cut(s) 1183, 1371
BspHI TCATGA 2 cut(s) 1114, 1194
BspLI GGNNCC 3 cut(s) 723, 795, 953
BspMAI CTGCAG 2 cut(s) 274, 1104
BspMI ACCTGC 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 1376
BsrDI GCAATG 1 cut(s) 1061
BsrI ACTGG 1 cut(s) 644
BssMI GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
Bst2UI CCWGG 2 cut(s) 1079, 1336
Bst4CI ACNGT 4 cut(s) 607, 632, 659, 688
BstAFI CTTAAG 1 cut(s) 1376
BstAPI GCANNNNNTGC 1 cut(s) 1358
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 117, 745, 1373
BstDEI CTNAG 3 cut(s) 663, 813, 1291
BstF5I GGATG 4 cut(s) 517, 538, 616, 997
BstFNI CGCG 2 cut(s) 1183, 1371
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 6 cut(s) 753, 790, 997, 1008, 1194, 1446
BstMAI GTCTC 2 cut(s) 347, 1121
BstMBI GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
BstMWI GCNNNNNNNGC 4 cut(s) 281, 1118, 1358, 1381
BstNI CCWGG 2 cut(s) 1079, 1336
BstSCI CCNGG 2 cut(s) 1077, 1334
BstSFI CTRYAG 3 cut(s) 270, 540, 1100
BstSLI GKGCMC 1 cut(s) 725
BstUI CGCG 2 cut(s) 1183, 1371
BstV1I GCAGC 9 cut(s) 139, 284, 296, 788, 1086, 1114, 1299, 1364, 1459
BstX2I RGATCY 1 cut(s) 750
BstXI CCANNNNNNTGG 2 cut(s) 295, 1306
BstYI RGATCY 1 cut(s) 750
BsuRI GGCC 3 cut(s) 723, 1154, 1339
BtsCI GGATG 4 cut(s) 517, 538, 616, 997
BtsIMutI CAGTG 3 cut(s) 462, 612, 664
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 3 cut(s) 117, 745, 1373
CciI TCATGA 2 cut(s) 1114, 1194
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 721, 722, 793
Csp6I GTAC 1 cut(s) 684
CviAII CATG 4 cut(s) 1115, 1195, 1306, 1408
CviQI GTAC 1 cut(s) 684
DdeI CTNAG 3 cut(s) 663, 813, 1291
DpnI GATC 6 cut(s) 752, 789, 996, 1007, 1193, 1445
DpnII GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
DraIII CACNNNGTG 1 cut(s) 1264
EaeI YGGCCR 2 cut(s) 1152, 1337
EciI GGCGGA 1 cut(s) 356
Eco24I GRGCYC 2 cut(s) 427, 725
Eco32I GATATC 1 cut(s) 819
Eco47I GGWCC 1 cut(s) 793
EcoO109I RGGNCCY 2 cut(s) 722, 793
EcoRII CCWGG 2 cut(s) 1077, 1334
EcoRV GATATC 1 cut(s) 819
EcoT38I GRGCYC 2 cut(s) 427, 725
FaeI CATG 4 cut(s) 1118, 1198, 1309, 1411
FalI AAGNNNNNCTT 2 cut(s) 1341, 1373
FaqI GGGAC 2 cut(s) 779, 1199
FatI CATG 4 cut(s) 1114, 1194, 1305, 1407
FauI CCCGC 1 cut(s) 1176
FbaI TGATCA 1 cut(s) 1191
FblI GTMKAC 2 cut(s) 543, 1420
Fnu4HI GCNGC 9 cut(s) 153, 273, 285, 777, 1100, 1103, 1313, 1353, 1473
FokI GGATG 4 cut(s) 504, 545, 623, 1004
FriOI GRGCYC 2 cut(s) 427, 725
Fsp4HI GCNGC 9 cut(s) 153, 273, 285, 777, 1100, 1103, 1313, 1353, 1473
FspBI CTAG 5 cut(s) 56, 230, 239, 1220, 1229
FspI TGCGCA 1 cut(s) 156
GlaI GCGC 1 cut(s) 156
GluI GCNGC 9 cut(s) 153, 273, 285, 777, 1100, 1103, 1313, 1353, 1473
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 3 cut(s) 723, 1154, 1339
HhaI GCGC 1 cut(s) 157
Hin1II CATG 4 cut(s) 1118, 1198, 1309, 1411
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 2 cut(s) 492, 892
HindII GTYRAC 2 cut(s) 492, 892
HindIII AAGCTT 1 cut(s) 1011
HinfI GANTC 8 cut(s) 104, 187, 217, 410, 560, 590, 985, 1198
HpaI GTTAAC 1 cut(s) 492
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 6 cut(s) 178, 492, 544, 655, 892, 1421
Hpy188I TCNGA 6 cut(s) 198, 666, 787, 814, 999, 1141
Hpy188III TCNNGA 8 cut(s) 124, 308, 428, 989, 1115, 1195, 1220, 1259
Hpy8I GTNNAC 6 cut(s) 178, 492, 544, 655, 892, 1421
HpyAV CCTTC 4 cut(s) 121, 316, 938, 1279
HpyCH4III ACNGT 4 cut(s) 607, 632, 659, 688
HpyCH4IV ACGT 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 1118, 1358, 1381
HpyF3I CTNAG 3 cut(s) 663, 813, 1291
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 4 cut(s) 1118, 1198, 1309, 1411
HspAI GCGC 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 1191
KspAI GTTAAC 1 cut(s) 492
Kzo9I GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
LmnI GCTCC 3 cut(s) 951, 1093, 1309
Lsp1109I GCAGC 9 cut(s) 139, 284, 296, 788, 1086, 1114, 1299, 1364, 1459
LweI GCATC 8 cut(s) 445, 526, 601, 607, 694, 844, 1108, 1264
MaeI CTAG 5 cut(s) 56, 230, 239, 1220, 1229
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 1 cut(s) 601
MalI GATC 6 cut(s) 752, 789, 996, 1007, 1193, 1445
MboI GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
MboII GAAGA 9 cut(s) 226, 704, 713, 902, 1054, 1061, 1256, 1320, 1323
MfeI CAATTG 2 cut(s) 108, 858
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 5 cut(s) 246, 427, 664, 725, 1397
MlsI TGGCCA 2 cut(s) 1154, 1339
MluCI AATT 6 cut(s) 45, 108, 478, 858, 871, 1434
MluNI TGGCCA 2 cut(s) 1154, 1339
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 950
MnlI CCTC 7 cut(s) 292, 414, 544, 793, 855, 1270, 1414
Mox20I TGGCCA 2 cut(s) 1154, 1339
MscI TGGCCA 2 cut(s) 1154, 1339
MseI TTAA 4 cut(s) 65, 261, 491, 1377
MslI CAYNNNNRTG 1 cut(s) 39
Msp20I TGGCCA 2 cut(s) 1154, 1339
MspA1I CMGCKG 1 cut(s) 1027
MspCI CTTAAG 1 cut(s) 1376
MspR9I CCNGG 2 cut(s) 1079, 1336
MunI CAATTG 2 cut(s) 108, 858
MvaI CCWGG 2 cut(s) 1079, 1336
MvnI CGCG 2 cut(s) 1183, 1371
MwoI GCNNNNNNNGC 4 cut(s) 281, 1118, 1358, 1381
NdeII GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
NlaIII CATG 4 cut(s) 1118, 1198, 1309, 1411
NlaIV GGNNCC 3 cut(s) 723, 795, 953
NmuCI GTSAC 1 cut(s) 601
NsbI TGCGCA 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 39
PagI TCATGA 2 cut(s) 1114, 1194
PaqCI CACCTGC 1 cut(s) 196
PfeI GAWTC 7 cut(s) 104, 187, 217, 410, 560, 985, 1198
PflMI CCANNNNNTGG 1 cut(s) 961
PkrI GCNGC 9 cut(s) 154, 274, 286, 778, 1101, 1104, 1314, 1354, 1474
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 512
PpuMI RGGWCCY 1 cut(s) 793
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 2 cut(s) 1077, 1334
PspGI CCWGG 2 cut(s) 1077, 1334
PspN4I GGNNCC 3 cut(s) 723, 795, 953
PspOMI GGGCCC 1 cut(s) 721
PspPI GGNCC 3 cut(s) 721, 722, 793
PspPPI RGGWCCY 1 cut(s) 793
PstI CTGCAG 2 cut(s) 274, 1104
PsuI RGATCY 1 cut(s) 750
RsaI GTAC 1 cut(s) 685
RsaNI GTAC 1 cut(s) 684
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 4 cut(s) 65, 261, 491, 1377
SatI GCNGC 9 cut(s) 153, 273, 285, 777, 1100, 1103, 1313, 1353, 1473
Sau3AI GATC 6 cut(s) 750, 787, 994, 1005, 1191, 1443
Sau96I GGNCC 3 cut(s) 721, 722, 793
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 2 cut(s) 1079, 1336
SduI GDGCHC 5 cut(s) 246, 427, 664, 725, 1397
SfaNI GCATC 8 cut(s) 445, 526, 601, 607, 694, 844, 1108, 1264
SfcI CTRYAG 3 cut(s) 270, 540, 1100
SinI GGWCC 1 cut(s) 793
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 846, 1376
SmoI CTYRAG 2 cut(s) 846, 1376
SpeI ACTAGT 1 cut(s) 1228
Sse9I AATT 6 cut(s) 45, 108, 478, 858, 871, 1434
SsiI CCGC 3 cut(s) 341, 1027, 1183
SspMI CTAG 5 cut(s) 56, 230, 239, 1220, 1229
StyD4I CCNGG 2 cut(s) 1077, 1334
TaaI ACNGT 4 cut(s) 607, 632, 659, 688
TaiI ACGT 1 cut(s) 514
TaqI TCGA 3 cut(s) 22, 123, 419
TasI AATT 6 cut(s) 45, 108, 478, 858, 871, 1434
TfiI GAWTC 7 cut(s) 104, 187, 217, 410, 560, 985, 1198
Tru1I TTAA 4 cut(s) 65, 261, 491, 1377
Tru9I TTAA 4 cut(s) 65, 261, 491, 1377
TscAI CASTG 3 cut(s) 469, 612, 664
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 9 cut(s) 152, 272, 284, 776, 1099, 1102, 1312, 1352, 1472
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 5 cut(s) 786, 902, 1062, 1227, 1418
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 3 cut(s) 469, 612, 664
Van91I CCANNNNNTGG 1 cut(s) 961
Vha464I CTTAAG 1 cut(s) 1376
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 1 cut(s) 478
XbaI TCTAGA 1 cut(s) 1219
XmiI GTMKAC 2 cut(s) 543, 1420
XspI CTAG 5 cut(s) 56, 230, 239, 1220, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.