AT5G07960

Uncharacterised protein family (UPF0139)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015214
Physical Location & Seq
Forward (+)
2542246 .. 2543646
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07960.1

Sequence Viewer

Length: 324 bp
ATGTCTCACAGTCACGGGAACGCTTCGTCGGTGAACGATCCACGGCAGCCTTCGGCGGCAAAGCCTTACATTCCACGGCCTGTAGCGCCGGAGGATCTTCCCGTTGACTACTCCGGATTCATCGCCGTTATCCTCGGCGTCTCCGGCGTTATGTTCAGGTACAAGATATGCTCGTGGCTTGCAATTATATTCTGTGCACAATCTCTGGCCAACATGAGGAACTTGGAAAATGATTTAAAGCAGATCTCCATGGCTATGATGTTTGCTATAATGGGATTGGTTACAAACTACTTAGGGCCTAACAGACCCGCGACAAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0139

Protein Analysis

107

Amino Acids

11.74

Weight (kDa)

9.34

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASTER PF03669 11 - 104 3.8e-38 PAT complex subunit Asterix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07960
fragaria_vesca FvH4_5g14060 FvH4_5g14160
malus_domestica MD06G1200600.v1.1 MD14G1210100.v1.1
pyrus_communis pycom14g17360
rosa_chinensis RchiOBHm_Chr7g0182761
rosa_laevigata RLG00000005102
rosa_multiflora Rmu_sc0000014.1_g000031
rosa_roxburghii Rroxscaffold_3G00271010
rosa_rugosa Rorug06G0450000
rosa_samantha Rh7AG053800 Rh7BG053300 Rh7CG054900 Rh7DG053100
rosa_wichuraiana Rw7G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 2 cut(s) 56, 309
AclWI GGATC 2 cut(s) 32, 102
AcoI YGGCCR 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 9, 145
Alw44I GTGCAC 1 cut(s) 195
AlwI GGATC 2 cut(s) 32, 102
Aor13HI TCCGGA 1 cut(s) 113
AoxI GGCC 3 cut(s) 77, 207, 296
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 199
BalI TGGCCA 1 cut(s) 209
BauI CACGAG 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 58
BceAI ACGGC 3 cut(s) 59, 92, 110
BcoDI GTCTC 2 cut(s) 9, 145
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 89
BglII AGATCT 1 cut(s) 243
BisI GCNGC 2 cut(s) 47, 57
BlsI GCNGC 2 cut(s) 48, 58
BmgT120I GGNCC 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 41, 74, 133, 249
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 113
BseDI CCNNGG 4 cut(s) 41, 74, 133, 249
BseLI CCNNNNNNNGG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 3 cut(s) 79, 209, 298
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 3 cut(s) 89, 114, 144
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 9, 145
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 3 cut(s) 79, 209, 298
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 113
Bsp143I GATC 3 cut(s) 37, 94, 243
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 2 cut(s) 56, 309
BspANI GGCC 3 cut(s) 79, 209, 298
BspEI TCCGGA 1 cut(s) 113
BspFNI CGCG 1 cut(s) 311
BspPI GGATC 2 cut(s) 32, 102
BssECI CCNNGG 4 cut(s) 41, 74, 133, 249
BssMI GATC 3 cut(s) 37, 94, 243
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 292
BstDSI CCRYGG 3 cut(s) 41, 74, 249
BstFNI CGCG 1 cut(s) 311
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 40, 97, 246
BstMAI GTCTC 2 cut(s) 9, 145
BstMBI GATC 3 cut(s) 37, 94, 243
BstMWI GCNNNNNNNGC 2 cut(s) 85, 144
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 2 cut(s) 94, 243
BstYI RGATCY 2 cut(s) 94, 243
BsuRI GGCC 3 cut(s) 79, 209, 298
BtgI CCRYGG 3 cut(s) 41, 74, 249
BtgZI GCGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 214, 250
CviJI RGCY 7 cut(s) 49, 64, 79, 178, 209, 254, 298
CviKI_1 RGCY 7 cut(s) 49, 64, 79, 178, 209, 254, 298
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 292
DpnI GATC 3 cut(s) 39, 96, 245
DpnII GATC 3 cut(s) 37, 94, 243
DraI TTTAAA 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 2 cut(s) 217, 253
FaiI YATR 7 cut(s) 152, 169, 188, 215, 251, 257, 269
FatI CATG 2 cut(s) 213, 249
FauI CCCGC 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 47, 57
Fsp4HI GCNGC 2 cut(s) 47, 57
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 47, 57
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 3 cut(s) 79, 209, 298
HapII CCGG 3 cut(s) 89, 114, 144
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 217, 253
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 117
HpaII CCGG 3 cut(s) 89, 114, 144
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 34, 106, 197
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 3 cut(s) 34, 106, 197
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 182, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 144
HpyF3I CTNAG 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 217, 253
HspAI GCGC 1 cut(s) 86
Kpn2I TCCGGA 1 cut(s) 113
Kzo9I GATC 3 cut(s) 37, 94, 243
LpnPI CCDG 6 cut(s) 93, 102, 127, 142, 157, 191
Lsp1109I GCAGC 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 11, 280
MalI GATC 3 cut(s) 39, 96, 245
MboI GATC 3 cut(s) 37, 94, 243
MboII GAAGA 1 cut(s) 89
MflI RGATCY 2 cut(s) 94, 243
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 209
MnlI CCTC 3 cut(s) 85, 143, 210
Mox20I TGGCCA 1 cut(s) 209
MroI TCCGGA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 209
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 3 cut(s) 89, 114, 144
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 85, 144
NcoI CCATGG 1 cut(s) 249
NdeII GATC 3 cut(s) 37, 94, 243
NlaIII CATG 2 cut(s) 217, 253
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 48, 58
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 2 cut(s) 94, 243
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 2 cut(s) 47, 57
Sau3AI GATC 3 cut(s) 37, 94, 243
Sau96I GGNCC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 199
SetI ASST 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 1 cut(s) 183
SsiI CCGC 2 cut(s) 56, 309
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 11
TasI AATT 1 cut(s) 183
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 109
VneI GTGCAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.