FvH4_5g14060

Uncharacterised protein family (UPF0139)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015214
Physical Location & Seq
Forward (+)
7966999 .. 7969613
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14060.t1

Sequence Viewer

Length: 321 bp
ATGTCATCGACGGCAGCGAACGATCCACGTCAGCCGGCGGCGGCGAAGCGCTACGTGCAGACGGCTGTATCTCCGGAGGATCTACCGGTGGATTACTCCGGCTTGATCGCCGTGGTCTTCGGCATCGCCGGCGTCATGTTCCGCTATAAGCTGTGCTCGTGGCTGGCGATCATCTTCTGTGCTCAGTCATTGGCGAACATGAAGAGCATTGAAAACGACCTCAAGCAGATCTCCATGGCCATGATGTTTGCTATTATGGGATTGGTGACCAACTACTTCGGACCGGCTCGACCAGGTGGACCTCCGAAGACCTCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0139

Protein Analysis

107

Amino Acids

11.42

Weight (kDa)

9.06

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASTER PF03669 6 - 98 2.5e-38 PAT complex subunit Asterix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07960
fragaria_vesca FvH4_5g14060 FvH4_5g14160
malus_domestica MD06G1200600.v1.1 MD14G1210100.v1.1
pyrus_communis pycom14g17360
rosa_chinensis RchiOBHm_Chr7g0182761
rosa_laevigata RLG00000005102
rosa_multiflora Rmu_sc0000014.1_g000031
rosa_roxburghii Rroxscaffold_3G00271010
rosa_rugosa Rorug06G0450000
rosa_samantha Rh7AG053800 Rh7BG053300 Rh7CG054900 Rh7DG053100
rosa_wichuraiana Rw7G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 3 cut(s) 38, 41, 142
AclWI GGATC 2 cut(s) 17, 87
AcoI YGGCCR 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 50
AgeI ACCGGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 212
AjiI CACGTC 1 cut(s) 29
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 2 cut(s) 158, 184
AlwI GGATC 2 cut(s) 17, 87
Aor13HI TCCGGA 1 cut(s) 73
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 14
AsiGI ACCGGT 1 cut(s) 85
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 281, 299
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 2 cut(s) 281, 299
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BalI TGGCCA 1 cut(s) 239
BauI CACGAG 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 109, 314
Bbv12I GWGCWC 2 cut(s) 158, 184
BbvI GCAGC 1 cut(s) 26
BceAI ACGGC 3 cut(s) 27, 78, 95
BciT130I CCWGG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 52
BglII AGATCT 1 cut(s) 228
BisI GCNGC 3 cut(s) 15, 39, 42
BlsI GCNGC 3 cut(s) 16, 40, 43
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 2 cut(s) 281, 299
BmgBI CACGTC 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 281, 299
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 132
BpiI GAAGAC 2 cut(s) 109, 314
BpuEI CTTGAG 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 111, 234
BsaWI WCCGGW 2 cut(s) 73, 85
Bse118I RCCGGY 4 cut(s) 34, 85, 128, 283
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 111, 234
BseMII CTCAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 239
BshTI ACCGGT 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 158, 184
BsiSI CCGG 6 cut(s) 35, 74, 86, 99, 129, 284
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 158, 184
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 5 cut(s) 22, 79, 105, 168, 228
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 38, 41, 142
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 196
BspEI TCCGGA 1 cut(s) 73
BspPI GGATC 2 cut(s) 17, 87
BspQI GCTCTTC 1 cut(s) 197
BsrFI RCCGGY 4 cut(s) 34, 85, 128, 283
BssAI RCCGGY 4 cut(s) 34, 85, 128, 283
BssECI CCNNGG 2 cut(s) 111, 234
BssMI GATC 5 cut(s) 22, 79, 105, 168, 228
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 3 cut(s) 36, 130, 165
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 2 cut(s) 111, 234
BstEII GGTNACC 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 5 cut(s) 25, 82, 108, 171, 231
BstMBI GATC 5 cut(s) 22, 79, 105, 168, 228
BstMWI GCNNNNNNNGC 2 cut(s) 55, 129
BstNI CCWGG 1 cut(s) 294
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 2 cut(s) 109, 314
BstX2I RGATCY 2 cut(s) 79, 228
BstYI RGATCY 2 cut(s) 79, 228
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 2 cut(s) 111, 234
BtgZI GCGATG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 36, 130, 165
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 4 cut(s) 34, 85, 128, 283
Cfr13I GGNCC 2 cut(s) 281, 299
CpoI CGGWCCG 1 cut(s) 281
CseI GACGC 1 cut(s) 121
CsiI ACCWGGT 1 cut(s) 292
CspAI ACCGGT 1 cut(s) 85
CspI CGGWCCG 1 cut(s) 281
CviAII CATG 4 cut(s) 136, 199, 235, 241
CviJI RGCY 7 cut(s) 34, 65, 102, 151, 163, 239, 287
CviKI_1 RGCY 7 cut(s) 34, 65, 102, 151, 163, 239, 287
DdeI CTNAG 1 cut(s) 183
DpnI GATC 5 cut(s) 24, 81, 107, 170, 230
DpnII GATC 5 cut(s) 22, 79, 105, 168, 228
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 281, 299
Eco47III AGCGCT 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 4 cut(s) 139, 202, 238, 244
FaiI YATR 6 cut(s) 137, 147, 200, 236, 242, 257
FatI CATG 4 cut(s) 135, 198, 234, 240
Fnu4HI GCNGC 3 cut(s) 15, 39, 42
Fsp4HI GCNGC 3 cut(s) 15, 39, 42
GlaI GCGC 1 cut(s) 50
GluI GCNGC 3 cut(s) 15, 39, 42
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 1 cut(s) 239
HapII CCGG 6 cut(s) 35, 74, 86, 99, 129, 284
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 139, 202, 238, 244
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HpaII CCGG 6 cut(s) 35, 74, 86, 99, 129, 284
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 281, 306
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 28, 54
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 129
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 28, 54
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 139, 202, 238, 244
HspAI GCGC 1 cut(s) 49
Kpn2I TCCGGA 1 cut(s) 73
KroI GCCGGC 2 cut(s) 34, 128
KroNI GCCGGC 2 cut(s) 36, 130
Kzo9I GATC 5 cut(s) 22, 79, 105, 168, 228
LguI GCTCTTC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 48, 87, 99, 112, 142, 149, 279, 297, 306
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 132
MabI ACCWGGT 1 cut(s) 292
MaeII ACGT 2 cut(s) 28, 54
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 24, 81, 107, 170, 230
MboI GATC 5 cut(s) 22, 79, 105, 168, 228
MboII GAAGA 4 cut(s) 109, 166, 214, 319
MflI RGATCY 2 cut(s) 79, 228
MhlI GDGCHC 2 cut(s) 158, 184
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 1 cut(s) 316
MluNI TGGCCA 1 cut(s) 239
MnlI CCTC 3 cut(s) 70, 230, 312
Mox20I TGGCCA 1 cut(s) 239
MreI CGCCGGCG 1 cut(s) 128
MroI TCCGGA 1 cut(s) 73
MroNI GCCGGC 2 cut(s) 34, 128
MscI TGGCCA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 6 cut(s) 35, 74, 86, 99, 129, 284
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 55, 129
NaeI GCCGGC 2 cut(s) 36, 130
NcoI CCATGG 1 cut(s) 234
NdeII GATC 5 cut(s) 22, 79, 105, 168, 228
NgoMIV GCCGGC 2 cut(s) 34, 128
NlaIII CATG 4 cut(s) 139, 202, 238, 244
NmuCI GTSAC 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 164
PdiI GCCGGC 2 cut(s) 36, 130
PinAI ACCGGT 1 cut(s) 85
PkrI GCNGC 3 cut(s) 16, 40, 43
Ppu21I YACGTR 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 292
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 292
PspPI GGNCC 2 cut(s) 281, 299
PsuI RGATCY 2 cut(s) 79, 228
RseI CAYNNNNRTG 1 cut(s) 239
Rsr2I CGGWCCG 1 cut(s) 281
RsrII CGGWCCG 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 3 cut(s) 15, 39, 42
Sau3AI GATC 5 cut(s) 22, 79, 105, 168, 228
Sau96I GGNCC 2 cut(s) 281, 299
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 158, 184
SetI ASST 7 cut(s) 31, 57, 153, 222, 298, 304, 314
SexAI ACCWGGT 1 cut(s) 292
SfaNI GCATC 1 cut(s) 132
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 2 cut(s) 281, 299
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 316
SsiI CCGC 3 cut(s) 38, 41, 142
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 2 cut(s) 31, 57
TaqI TCGA 3 cut(s) 8, 289, 314
TasI AATT 1 cut(s) 316
TauI GCSGC 2 cut(s) 41, 44
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 281, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.