MD06G1200600.v1.1

Uncharacterised protein family (UPF0139)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015214
Physical Location & Seq
Reverse (-)
33396564 .. 33398287
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1200600.v1.1.491

Sequence Viewer

Length: 342 bp
ATGTCATCGCCGGTGAACGACCCGCGCCAGCCCTCCGTGGCGAAGCGCTACGTGCCGTCCGCCGTGCCGCCGCAGGATCTTCCAGTCGATTACTCCGGTCTCATCGCCGTCGTCTTCGGCATCGCCGGCGTCATGTTCCGCTACAAGTTGTGTTCTTGGGTTGCGATTATGTTCTGTGCTCAATCGCTGGTGAACATGAAGAACTTGGAGAACGACCTCAAACAGATCTCCATGGCTATGATGTTTGCTATTATGGGATTGGTAACCAACTACTTCGGACCTGCTCGACCGGGGACACAAAAGAGATCAATTTCAAGCAAAATGGAGAAAAGGAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0139

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

9.88

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASTER PF03669 6 - 98 3.2e-37 PAT complex subunit Asterix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07960
fragaria_vesca FvH4_5g14060 FvH4_5g14160
malus_domestica MD06G1200600.v1.1 MD14G1210100.v1.1
pyrus_communis pycom14g17360
rosa_chinensis RchiOBHm_Chr7g0182761
rosa_laevigata RLG00000005102
rosa_multiflora Rmu_sc0000014.1_g000031
rosa_roxburghii Rroxscaffold_3G00271010
rosa_rugosa Rorug06G0450000
rosa_samantha Rh7AG053800 Rh7BG053300 Rh7CG054900 Rh7DG053100
rosa_wichuraiana Rw7G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AccII CGCG 1 cut(s) 25
AciI CCGC 5 cut(s) 23, 60, 68, 71, 139
AclWI GGATC 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 129
AfeI AGCGCT 1 cut(s) 47
AgsI TTSAA 1 cut(s) 315
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 84
Aor51HI AGCGCT 1 cut(s) 47
AspLEI GCGC 2 cut(s) 27, 48
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 25, 202
AvaII GGWCC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 181
BceAI ACGGC 3 cut(s) 40, 47, 92
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 289
BglII AGATCT 1 cut(s) 225
BisI GCNGC 2 cut(s) 68, 71
BlsI GCNGC 2 cut(s) 69, 72
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 36, 231, 290
BsaWI WCCGGW 1 cut(s) 95
Bse118I RCCGGY 2 cut(s) 10, 125
Bse1I ACTGG 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 36, 231, 290
BseNI ACTGG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 4 cut(s) 11, 96, 126, 290
BslFI GGGAC 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 76, 225, 305
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 5 cut(s) 23, 60, 68, 71, 139
BspFNI CGCG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 10, 125
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 10, 125
BssECI CCNNGG 3 cut(s) 36, 231, 290
BssMI GATC 3 cut(s) 76, 225, 305
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 29, 127
BstDSI CCRYGG 2 cut(s) 36, 231
BstEII GGTNACC 1 cut(s) 262
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 2 cut(s) 27, 48
BstKTI GATC 3 cut(s) 79, 228, 308
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 76, 225, 305
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 52, 126
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 2 cut(s) 76, 225
BstYI RGATCY 2 cut(s) 76, 225
BtgI CCRYGG 2 cut(s) 36, 231
BtgZI GCGATG 2 cut(s) 88, 106
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 29, 127
CfoI GCGC 2 cut(s) 27, 48
Cfr10I RCCGGY 2 cut(s) 10, 125
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 118
CviAII CATG 3 cut(s) 133, 196, 232
CviJI RGCY 2 cut(s) 31, 236
CviKI_1 RGCY 2 cut(s) 31, 236
DpnI GATC 3 cut(s) 78, 227, 307
DpnII GATC 3 cut(s) 76, 225, 305
EciI GGCGGA 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 278
Eco47III AGCGCT 1 cut(s) 47
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 3 cut(s) 136, 199, 235
FaiI YATR 6 cut(s) 134, 170, 197, 233, 239, 254
FaqI GGGAC 1 cut(s) 307
FatI CATG 3 cut(s) 132, 195, 231
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 68, 71
Fsp4HI GCNGC 2 cut(s) 68, 71
GlaI GCGC 2 cut(s) 26, 47
GluI GCNGC 2 cut(s) 68, 71
HaeII RGCGCY 1 cut(s) 49
HapII CCGG 4 cut(s) 11, 96, 126, 290
HgaI GACGC 1 cut(s) 118
HhaI GCGC 2 cut(s) 27, 48
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 136, 199, 235
Hin6I GCGC 2 cut(s) 25, 46
HinP1I GCGC 2 cut(s) 25, 46
HpaII CCGG 4 cut(s) 11, 96, 126, 290
HphI GGTGA 2 cut(s) 25, 202
Hpy166II GTNNAC 2 cut(s) 16, 193
Hpy188I TCNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 16, 193
Hpy99I CGWCG 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 126
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 136, 199, 235
HspAI GCGC 2 cut(s) 25, 46
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 76, 225, 305
LpnPI CCDG 9 cut(s) 24, 41, 59, 96, 109, 139, 173, 294, 303
LweI GCATC 1 cut(s) 129
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 78, 227, 307
MboI GATC 3 cut(s) 76, 225, 305
MboII GAAGA 3 cut(s) 71, 106, 211
MflI RGATCY 2 cut(s) 76, 225
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 309, 335
MnlI CCTC 2 cut(s) 43, 227
MreI CGCCGGCG 1 cut(s) 125
MroNI GCCGGC 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 4 cut(s) 11, 96, 126, 290
MspR9I CCNGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 52, 126
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 231
NdeII GATC 3 cut(s) 76, 225, 305
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 136, 199, 235
PdiI GCCGGC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 69, 72
Ppu21I YACGTR 1 cut(s) 52
PspEI GGTNACC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 2 cut(s) 76, 225
RseI CAYNNNNRTG 1 cut(s) 236
SatI GCNGC 2 cut(s) 68, 71
Sau3AI GATC 3 cut(s) 76, 225, 305
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 181
SetI ASST 3 cut(s) 54, 219, 283
SfaNI GCATC 1 cut(s) 129
SgrAI CRCCGGYG 2 cut(s) 10, 125
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 2 cut(s) 309, 335
SsiI CCGC 5 cut(s) 23, 60, 68, 71, 139
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 231
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 87, 286
TasI AATT 2 cut(s) 309, 335
TauI GCSGC 2 cut(s) 70, 73
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.