RLG00000005102

Uncharacterised protein family (UPF0139)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015214
Physical Location & Seq
Forward (+)
65058443 .. 65059116
674 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005102

Sequence Viewer

Length: 321 bp
ATGTCATCCACGGCAGCGAACGATCCACGTCAACCGGCAGCGGCGAAGCGCTACGTGCCGACGGCTTTAGCCCCGGAAGATCTACCAGTCGACTACTCCGGCTTGATCGCCGTCGTCTTCGGCATCGCCGGCGTCATGTTCCGCTACAAGCTGTGCTCGTGGCTGGCGATCATCTTCTGTGCTCAGTCACTGGTCAACATGAAGAGCATTGAAAACGATCTCAAGCAGATCTCCATGGCCATGATGTTTGGTATTATGGGATTGGTGACCAACTACTTTGGACCGGCTCGACCAGGTGCACCTTTGAAGAGCTCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0139

Protein Analysis

107

Amino Acids

11.42

Weight (kDa)

9.06

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASTER PF03669 6 - 99 4.2e-37 PAT complex subunit Asterix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07960
fragaria_vesca FvH4_5g14060 FvH4_5g14160
malus_domestica MD06G1200600.v1.1 MD14G1210100.v1.1
pyrus_communis pycom14g17360
rosa_chinensis RchiOBHm_Chr7g0182761
rosa_laevigata RLG00000005102
rosa_multiflora Rmu_sc0000014.1_g000031
rosa_roxburghii Rroxscaffold_3G00271010
rosa_rugosa Rorug06G0450000
rosa_samantha Rh7AG053800 Rh7BG053300 Rh7CG054900 Rh7DG053100
rosa_wichuraiana Rw7G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 41, 142
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 212, 307
AjiI CACGTC 1 cut(s) 29
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 151, 312
AluI AGCT 2 cut(s) 151, 312
Alw21I GWGCWC 4 cut(s) 158, 184, 301, 314
Alw44I GTGCAC 1 cut(s) 297
AlwI GGATC 1 cut(s) 17
AlwNI CAGNNNCTG 1 cut(s) 190
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 1 cut(s) 237
ApaLI GTGCAC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 14, 38
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 239
BanII GRGCYC 1 cut(s) 314
BauI CACGAG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 4 cut(s) 158, 184, 301, 314
BbvI GCAGC 2 cut(s) 26, 50
BceAI ACGGC 3 cut(s) 27, 78, 95
BciT130I CCWGG 1 cut(s) 294
BcnI CCSGG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 52
BglII AGATCT 2 cut(s) 79, 228
BisI GCNGC 3 cut(s) 15, 39, 42
BlsI GCNGC 3 cut(s) 16, 40, 43
Bme1390I CCNGG 2 cut(s) 74, 294
Bme18I GGWCC 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 74, 294
BmsI GCATC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 9, 72, 234
Bse118I RCCGGY 3 cut(s) 34, 128, 283
Bse1I ACTGG 2 cut(s) 86, 195
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 9, 72, 234
BseGI GGATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 86, 195
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 2 cut(s) 26, 50
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 4 cut(s) 158, 184, 301, 314
BsiSI CCGG 5 cut(s) 35, 74, 99, 129, 284
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 4 cut(s) 158, 184, 301, 314
Bsp143I GATC 6 cut(s) 22, 79, 105, 168, 217, 228
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 2 cut(s) 41, 142
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 17
BspQI GCTCTTC 2 cut(s) 197, 302
BsrFI RCCGGY 3 cut(s) 34, 128, 283
BsrI ACTGG 2 cut(s) 86, 195
BssAI RCCGGY 3 cut(s) 34, 128, 283
BssECI CCNNGG 3 cut(s) 9, 72, 234
BssMI GATC 6 cut(s) 22, 79, 105, 168, 217, 228
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 197, 302
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 130, 165
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 2 cut(s) 9, 234
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 1 cut(s) 5
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 6 cut(s) 25, 82, 108, 171, 220, 231
BstMBI GATC 6 cut(s) 22, 79, 105, 168, 217, 228
BstMWI GCNNNNNNNGC 2 cut(s) 55, 129
BstNI CCWGG 1 cut(s) 294
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 72, 292
BstSLI GKGCMC 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 26, 50
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 79, 228
BstYI RGATCY 2 cut(s) 79, 228
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 2 cut(s) 9, 234
BtgZI GCGATG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 130, 165
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 3 cut(s) 34, 128, 283
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 1 cut(s) 121
CsiI ACCWGGT 1 cut(s) 292
CviAII CATG 4 cut(s) 136, 199, 235, 241
CviJI RGCY 8 cut(s) 65, 71, 102, 151, 163, 239, 287, 312
CviKI_1 RGCY 8 cut(s) 65, 71, 102, 151, 163, 239, 287, 312
DdeI CTNAG 1 cut(s) 183
DpnI GATC 6 cut(s) 24, 81, 107, 170, 219, 230
DpnII GATC 6 cut(s) 22, 79, 105, 168, 217, 228
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 197, 302
EarI CTCTTC 2 cut(s) 197, 302
Ecl136II GAGCTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 281
Eco47III AGCGCT 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 312
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 4 cut(s) 139, 202, 238, 244
FaiI YATR 5 cut(s) 137, 200, 236, 242, 257
FatI CATG 4 cut(s) 135, 198, 234, 240
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 15, 39, 42
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 15, 39, 42
GlaI GCGC 1 cut(s) 50
GluI GCNGC 3 cut(s) 15, 39, 42
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 1 cut(s) 239
HapII CCGG 5 cut(s) 35, 74, 99, 129, 284
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 139, 202, 238, 244
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 3 cut(s) 32, 91, 196
HindII GTYRAC 3 cut(s) 32, 91, 196
HpaII CCGG 5 cut(s) 35, 74, 99, 129, 284
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 4 cut(s) 32, 91, 196, 299
Hpy8I GTNNAC 4 cut(s) 32, 91, 196, 299
Hpy99I CGWCG 2 cut(s) 64, 116
HpyCH4IV ACGT 2 cut(s) 28, 54
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 129
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 28, 54
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 139, 202, 238, 244
HspAI GCGC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 6 cut(s) 22, 79, 105, 168, 217, 228
LguI GCTCTTC 2 cut(s) 197, 302
Lsp1109I GCAGC 2 cut(s) 26, 50
LweI GCATC 1 cut(s) 132
MabI ACCWGGT 1 cut(s) 292
MaeII ACGT 2 cut(s) 28, 54
MaeIII GTNAC 2 cut(s) 186, 265
MalI GATC 6 cut(s) 24, 81, 107, 170, 219, 230
MboI GATC 6 cut(s) 22, 79, 105, 168, 217, 228
MboII GAAGA 5 cut(s) 89, 109, 166, 214, 319
MflI RGATCY 2 cut(s) 79, 228
MhlI GDGCHC 4 cut(s) 158, 184, 301, 314
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 1 cut(s) 316
MluNI TGGCCA 1 cut(s) 239
Mox20I TGGCCA 1 cut(s) 239
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 5 cut(s) 35, 74, 99, 129, 284
MspR9I CCNGG 2 cut(s) 74, 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 55, 129
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 234
NdeII GATC 6 cut(s) 22, 79, 105, 168, 217, 228
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 4 cut(s) 139, 202, 238, 244
NmuCI GTSAC 2 cut(s) 186, 265
PciSI GCTCTTC 2 cut(s) 197, 302
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PdiI GCCGGC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 16, 40, 43
Ppu21I YACGTR 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 292
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 292
PspPI GGNCC 1 cut(s) 281
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 79, 228
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 314
SalI GTCGAC 1 cut(s) 89
SapI GCTCTTC 2 cut(s) 197, 302
SatI GCNGC 3 cut(s) 15, 39, 42
Sau3AI GATC 6 cut(s) 22, 79, 105, 168, 217, 228
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 74, 294
SduI GDGCHC 4 cut(s) 158, 184, 301, 314
SetI ASST 6 cut(s) 31, 57, 153, 298, 304, 314
SexAI ACCWGGT 1 cut(s) 292
SfaNI GCATC 1 cut(s) 132
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 316
SsiI CCGC 2 cut(s) 41, 142
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 72, 292
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 2 cut(s) 31, 57
TaqI TCGA 3 cut(s) 90, 289, 314
TasI AATT 1 cut(s) 316
TauI GCSGC 1 cut(s) 44
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 186, 265
TseI GCWGC 2 cut(s) 14, 38
Tsp45I GTSAC 2 cut(s) 186, 265
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 195
VneI GTGCAC 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.