AT5G09830

Belongs to the BolA IbaG family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017143
Physical Location & Seq
Reverse (-)
3057603 .. 3058825
1223 bp
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UTR
Exon/CDS
Intron
AT5G09830.1

Sequence Viewer

Length: 282 bp
ATGGTGACGAAGGAGCAAGTCGAAGCTTCATTGACTTCGAAACTTAAGCCAATTCATCTCGAAGTCATTGACATATCTGGAGGTTGTGGTTCGAGTTTTGAAGTGGAGGTTGTCTCTGAACAATTCGAAGGGAAGAGATTGCTGGAGAGGCATCGTATGGTGAATGCTGCGCTAGAAGAAGAAATGAAAGAGATTCATGCTCTCTCTATTAAGAAAGCTCAGACTCCACAACAATGGAAGCCACCATCACAAGACTCTGCAACCTTAACCAAAGATGCCTGA

Protein Analysis

93

Amino Acids

10.37

Weight (kDa)

5.59

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BolA PF01722 11 - 77 9.7e-21 BolA-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09830
fragaria_vesca FvH4_1g23590
malus_domestica MD15G1343100.v1.1
prunus_persica Prupe.6G162900_v2.0.a1
pyrus_communis pycom15g30280
rosa_chinensis RchiOBHm_Chr2g0119151
rosa_multiflora Rmu_sc0001653.1_g000003
rosa_roxburghii Rroxscaffold_2G00124480
rosa_rugosa Rorug02G0220600
rosa_samantha Rh2AG278500 Rh2DG284600 Rh2DG303600
rosa_wichuraiana Rw2G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 26, 218
AluI AGCT 2 cut(s) 26, 218
Alw26I GTCTC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 16, 172
AsuII TTCGAA 2 cut(s) 38, 126
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmsI GCATC 2 cut(s) 160, 265
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 2 cut(s) 99, 164
Bpu14I TTCGAA 2 cut(s) 38, 126
BseMII CTCAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 169
Bsp119I TTCGAA 2 cut(s) 38, 126
BspCNI CTCAG 1 cut(s) 232
BspT104I TTCGAA 2 cut(s) 38, 126
BspTI CTTAAG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 44
BstBI TTCGAA 2 cut(s) 38, 126
BstDEI CTNAG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 234
CfoI GCGC 1 cut(s) 172
CviAII CATG 1 cut(s) 197
CviJI RGCY 4 cut(s) 26, 49, 218, 241
CviKI_1 RGCY 4 cut(s) 26, 49, 218, 241
DdeI CTNAG 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 74, 158, 198
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 2 cut(s) 99, 164
HhaI GCGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 193, 223, 254
HphI GGTGA 2 cut(s) 16, 172
Hpy188I TCNGA 2 cut(s) 118, 222
Hpy188III TCNNGA 2 cut(s) 59, 78
HpyAV CCTTC 2 cut(s) 4, 122
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 2 cut(s) 63, 128
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 2 cut(s) 160, 265
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 4
MboII GAAGA 3 cut(s) 145, 188, 191
MluCI AATT 2 cut(s) 51, 122
MlyI GAGTC 2 cut(s) 217, 248
MnlI CCTC 3 cut(s) 74, 100, 141
MseI TTAA 3 cut(s) 45, 210, 266
MslI CAYNNNNRTG 1 cut(s) 232
MspCI CTTAAG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 148
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 4
NspV TTCGAA 2 cut(s) 38, 126
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 2 cut(s) 217, 248
PpsI GAGTC 2 cut(s) 217, 248
RseI CAYNNNNRTG 1 cut(s) 232
SaqAI TTAA 3 cut(s) 45, 210, 266
SatI GCNGC 1 cut(s) 168
SchI GAGTC 2 cut(s) 217, 248
SetI ASST 5 cut(s) 28, 85, 111, 220, 266
SfaNI GCATC 2 cut(s) 160, 265
SfuI TTCGAA 2 cut(s) 38, 126
SgeI CNNG 8 cut(s) 29, 71, 90, 105, 155, 185, 209, 263
SmiMI CAYNNNNRTG 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 2 cut(s) 51, 122
SspMI CTAG 1 cut(s) 173
TaqI TCGA 5 cut(s) 21, 38, 60, 92, 126
TasI AATT 2 cut(s) 51, 122
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 3 cut(s) 45, 210, 266
Tru9I TTAA 3 cut(s) 45, 210, 266
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 18, 44, 185, 200
Vha464I CTTAAG 1 cut(s) 44
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.