Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017143

Physical Location & Seq

Genomic Coordinates Forward (+)

58777359 .. 58780631

Gene Structure 3273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAGCATTGAGAAAGGAATTATCCGCCAGAGGAGAGAGCAGCACACACACTCAAATTCTGGGGAGATGGGAGTGACCAAGGAACAAGTCGAAGCTTCATTGACCTCTAAATTGAACCCTTCACATCTCGAAGTAGTCGATACATCTGGAGGATGTGGTGCTAGCTTTGTTATTGAAATAGTATCAGAACAGTTTGAAGGAAAGAGGTTGCTAGAGAGGCATCGGGTGGTAAATTCTGCTTTGGAAGAGGAGATGAAGGAGATTCATGCTCTCTCAATAAAGAAGGCCCTCACACCAGAGCAGTGGAAACAACAGCAGGAGGCTGAAAAATCTAAACCTGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0010039 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA

Protein Analysis

115

Amino Acids

12.88

Weight (kDa)

6.21

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BolA	PF01722	34 - 101	2.7e-19	BolA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09830
fragaria_vesca	FvH4_1g23590
malus_domestica	MD15G1343100.v1.1
prunus_persica	Prupe.6G162900_v2.0.a1
pyrus_communis	pycom15g30280
rosa_chinensis	RchiOBHm_Chr2g0119151
rosa_multiflora	Rmu_sc0001653.1_g000003
rosa_roxburghii	Rroxscaffold_2G00124480
rosa_rugosa	Rorug02G0220600
rosa_samantha	Rh2AG278500 Rh2DG284600 Rh2DG303600
rosa_wichuraiana	Rw2G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	55, 232
AgsI	TTSAA	3 cut(s)	115, 176, 197
AluBI	AGCT	2 cut(s)	95, 165
AluI	AGCT	2 cut(s)	95, 165
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	40, 341
ApoI	RAATTY	2 cut(s)	55, 232
AspS9I	GGNCC	1 cut(s)	286
AsuNHI	GCTAGC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	52, 328
BccI	CCATC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	162, 212
BisI	GCNGC	2 cut(s)	41, 342
BlsI	GCNGC	2 cut(s)	42, 343
BmgT120I	GGNCC	1 cut(s)	286
BmsI	GCATC	1 cut(s)	229
BmtI	GCTAGC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	46, 263
BseXI	GCAGC	2 cut(s)	52, 328
BshFI	GGCC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	287
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	287
BspOI	GCTAGC	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	52, 328
BstXI	CCANNNNNNTGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	4 cut(s)	95, 165, 287, 323
CviKI_1	RGCY	4 cut(s)	95, 165, 287, 323
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	269
FaiI	YATR	1 cut(s)	267
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	41, 342
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	41, 342
FspBI	CTAG	2 cut(s)	162, 212
GluI	GCNGC	2 cut(s)	41, 342
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	128, 147
HpyAV	CCTTC	4 cut(s)	129, 191, 250, 277
HpyCH4III	ACNGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	41, 45, 132, 302, 309
Lsp1109I	GCAGC	2 cut(s)	52, 328
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	162, 212
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	257
MluCI	AATT	4 cut(s)	18, 55, 110, 232
MnlI	CCTC	8 cut(s)	24, 115, 143, 198, 210, 241, 299, 313
MwoI	GCNNNNNNNGC	1 cut(s)	217
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	42, 343
PspPI	GGNCC	1 cut(s)	286
SatI	GCNGC	2 cut(s)	41, 342
Sau96I	GGNCC	1 cut(s)	286
SetI	ASST	5 cut(s)	97, 107, 167, 209, 340
SfaNI	GCATC	1 cut(s)	229
Sse9I	AATT	4 cut(s)	18, 55, 110, 232
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	162, 212
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	90, 129, 138
TasI	AATT	4 cut(s)	18, 55, 110, 232
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	40, 341
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	87, 254, 269
TspRI	CASTG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	55, 232
XspI	CTAG	2 cut(s)	162, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.