Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017143

Physical Location & Seq

Genomic Coordinates Reverse (-)

15417928 .. 15420789

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGAGTCACCAAGGAACAAGTCGAAGCTACACTCACATCCAAATTGAAACCTTCACATCTCGATGTAGTTGATACATCTGGAGGATGCGGTGCTAGCTTTGTTATTGAAATAGTATCAGAGCAGTTTGAAGGAAAGAGGTTGCTAGAGAGGCATCGGGTGGTAAATTCTGCTTTGGAAGAGGAGATGAAGGAGATTCATGCCCTCTCAATAAAGAAGGCCCTCACACCAGAGCAGTGGAAACAACAGCTGGAGGCTGAAAAATCTAAACCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0010039 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA

Protein Analysis

94

Amino Acids

10.3

Weight (kDa)

5.91

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BolA	PF01722	12 - 79	3.3e-19	BolA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09830
fragaria_vesca	FvH4_1g23590
malus_domestica	MD15G1343100.v1.1
prunus_persica	Prupe.6G162900_v2.0.a1
pyrus_communis	pycom15g30280
rosa_chinensis	RchiOBHm_Chr2g0119151
rosa_multiflora	Rmu_sc0001653.1_g000003
rosa_roxburghii	Rroxscaffold_2G00124480
rosa_rugosa	Rorug02G0220600
rosa_samantha	Rh2AG278500 Rh2DG284600 Rh2DG303600
rosa_wichuraiana	Rw2G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	49, 110, 131
AluBI	AGCT	3 cut(s)	29, 99, 250
AluI	AGCT	3 cut(s)	29, 99, 250
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	96, 146
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	77, 163
BmtI	GCTAGC	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	102, 272
BsaJI	CCNNGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	38, 92
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	38, 92
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 151
BstV1I	GCAGC	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	38, 92
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	5 cut(s)	29, 99, 221, 250, 257
CviKI_1	RGCY	5 cut(s)	29, 99, 221, 250, 257
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	203
FaiI	YATR	1 cut(s)	201
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	25, 99
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	96, 146
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	2 cut(s)	102, 272
HaeIII	GGCC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	2 cut(s)	6, 196
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	62, 81
HpyAV	CCTTC	4 cut(s)	63, 125, 184, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 151
Hsp92II	CATG	1 cut(s)	203
LpnPI	CCDG	3 cut(s)	66, 236, 243
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	77, 163
MaeI	CTAG	2 cut(s)	96, 146
MaeIII	GTNAC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	191
MluCI	AATT	2 cut(s)	44, 166
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	77, 132, 144, 175, 215, 233, 247
MseI	TTAA	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	96, 151
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	15
SetI	ASST	6 cut(s)	31, 55, 101, 143, 252, 274
SfaNI	GCATC	2 cut(s)	77, 163
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	44, 166
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	96, 146
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	2 cut(s)	24, 63
TasI	AATT	2 cut(s)	44, 166
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	188, 203
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	166
XspI	CTAG	2 cut(s)	96, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.