AT5G10745

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018759
Physical Location & Seq
Forward (+)
3396199 .. 3398335
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10745.2

Sequence Viewer

Length: 156 bp
ATGGCGAAGGAGCAGCACTTACGACCTTGGTTTCTGGATCTAGTACCGGCTTTGGTTGTTTTGCTCGCCGCAGCTCATGTCATCGCCTTGGGTTACTGGATTTACAGATTGGCCACTGATCGTCGAGCTCAGAGTCAGAGAGGCAAATTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.93

Weight (kDa)

10.41

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018759)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10745 AT5G10745 AT5G10745
malus_domestica MD08G1050300.v1.1 MD15G1044500.v1.1
prunus_persica Prupe.1G398400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0299081
rosa_roxburghii Rroxscaffold_7G00169020
rosa_wichuraiana Rw6G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 45
AluBI AGCT 2 cut(s) 74, 128
AluI AGCT 2 cut(s) 74, 128
Alw21I GWGCWC 1 cut(s) 130
AlwI GGATC 1 cut(s) 45
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 13, 71
ApoI RAATTY 1 cut(s) 146
BalI TGGCCA 1 cut(s) 113
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 25, 83
BfaI CTAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 14, 69, 72
BlsI GCNGC 3 cut(s) 15, 70, 73
BsaJI CCNNGG 2 cut(s) 26, 87
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 26, 87
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 25, 83
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 37, 118
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 142
BspPI GGATC 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 26, 87
BssMI GATC 2 cut(s) 37, 118
BssT1I CCWWGG 2 cut(s) 26, 87
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 129
BstKTI GATC 2 cut(s) 40, 121
BstMBI GATC 2 cut(s) 37, 118
BstV1I GCAGC 2 cut(s) 25, 83
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 114, 151
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 46
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 77
CviJI RGCY 4 cut(s) 50, 74, 113, 128
CviKI_1 RGCY 4 cut(s) 50, 74, 113, 128
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 39, 120
DpnII GATC 2 cut(s) 37, 118
EaeI YGGCCR 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 26, 87
Eco24I GRGCYC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 26, 87
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 26, 87
FaeI CATG 1 cut(s) 80
FaiI YATR 1 cut(s) 78
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 3 cut(s) 14, 69, 72
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 14, 69, 72
FspBI CTAG 1 cut(s) 41
GluI GCNGC 3 cut(s) 14, 69, 72
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 47
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 132, 138
Hpy188III TCNNGA 1 cut(s) 35
Hpy99I CGWCG 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 2 cut(s) 37, 118
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 20, 60, 82
Lsp1109I GCAGC 2 cut(s) 25, 83
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 39, 120
MboI GATC 2 cut(s) 37, 118
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 1 cut(s) 134
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 1 cut(s) 47
NdeII GATC 2 cut(s) 37, 118
NlaIII CATG 1 cut(s) 80
PkrI GCNGC 3 cut(s) 15, 70, 73
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 130
SatI GCNGC 3 cut(s) 14, 69, 72
Sau3AI GATC 2 cut(s) 37, 118
SchI GAGTC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 130
SetI ASST 3 cut(s) 28, 76, 130
SgeI CNNG 9 cut(s) 39, 47, 53, 59, 77, 89, 100, 109, 137
Sse9I AATT 1 cut(s) 146
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 130
StyI CCWWGG 2 cut(s) 26, 87
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 146
TauI GCSGC 1 cut(s) 71
TscAI CASTG 1 cut(s) 121
TseI GCWGC 2 cut(s) 13, 71
TspRI CASTG 1 cut(s) 121
XapI RAATTY 1 cut(s) 146
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.