Prupe.1G398400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
35257743 .. 35259583
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G398400.1

Sequence Viewer

Length: 162 bp
ATGGCGAATCCGCAGCAGATATCTCTTCGGCCATGGATCCTCGAAGCAGTCCCGTTCATCGTCGTTCTCCTAATAGTAGCTCATGTCCTCGCTTTGGTGTATTGGATATACAGACTAGCTACTGAGAAAGAGAGGCAGCCCCAGAGGAGAAAAGCACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.28

Weight (kDa)

10.41

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018759)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10745 AT5G10745 AT5G10745
malus_domestica MD08G1050300.v1.1 MD15G1044500.v1.1
prunus_persica Prupe.1G398400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0299081
rosa_roxburghii Rroxscaffold_7G00169020
rosa_wichuraiana Rw6G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 31, 44
AcoI YGGCCR 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 80, 119
AluI AGCT 2 cut(s) 80, 119
AlwI GGATC 2 cut(s) 31, 44
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 13, 136
BamHI GGATCC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 25, 148
BfaI CTAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 14, 137
BlsI GCNGC 2 cut(s) 15, 138
BmiI GGNNCC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 25, 148
BshFI GGCC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 2 cut(s) 31, 44
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 32
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 25, 148
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 32
CviAII CATG 2 cut(s) 33, 83
CviJI RGCY 4 cut(s) 31, 80, 119, 139
CviKI_1 RGCY 4 cut(s) 31, 80, 119, 139
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 32
Eco32I GATATC 1 cut(s) 21
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 2 cut(s) 36, 86
FaiI YATR 3 cut(s) 34, 84, 109
FaqI GGGAC 1 cut(s) 35
FatI CATG 2 cut(s) 32, 82
Fnu4HI GCNGC 2 cut(s) 14, 137
Fsp4HI GCNGC 2 cut(s) 14, 137
FspBI CTAG 1 cut(s) 116
GluI GCNGC 2 cut(s) 14, 137
HaeIII GGCC 1 cut(s) 31
Hin1II CATG 2 cut(s) 36, 86
HinfI GANTC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 36, 86
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 1 cut(s) 155
Lsp1109I GCAGC 2 cut(s) 25, 148
MaeI CTAG 1 cut(s) 116
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 36
MnlI CCTC 4 cut(s) 50, 98, 126, 138
NcoI CCATGG 1 cut(s) 32
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 36, 86
NlaIV GGNNCC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 15, 138
PspN4I GGNNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 36
SatI GCNGC 2 cut(s) 14, 137
Sau3AI GATC 1 cut(s) 36
SetI ASST 2 cut(s) 82, 121
SgeI CNNG 7 cut(s) 45, 53, 64, 95, 101, 128, 154
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 32
TaqI TCGA 1 cut(s) 42
TfiI GAWTC 1 cut(s) 7
TseI GCWGC 2 cut(s) 13, 136
TspDTI ATGAA 1 cut(s) 46
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.