MD15G1044500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018759
Physical Location & Seq
Reverse (-)
3059168 .. 3059996
829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1044500.v1.1.491

Sequence Viewer

Length: 162 bp
ATGGCGAATCCGCAGCCGGCGTCTCTGCGGCCATGGTTCCTCGAATCGGTGCCGTTCGTGGTGGTTCTCCTAATAGTAGCTCACGTCCTCGCTCTGGTGTATTGGATGTACAGATTAGCTACTGAGAAGGAGAGGCAGCCCCGGAGGATAAAAGTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.26

Weight (kDa)

10.41

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018759)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10745 AT5G10745 AT5G10745
malus_domestica MD08G1050300.v1.1 MD15G1044500.v1.1
prunus_persica Prupe.1G398400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0299081
rosa_roxburghii Rroxscaffold_7G00169020
rosa_wichuraiana Rw6G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 2 cut(s) 11, 28
AcoI YGGCCR 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 110, 156
AfiI CCNNNNNNNGG 2 cut(s) 46, 94
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 2 cut(s) 80, 119
AluI AGCT 2 cut(s) 80, 119
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 13, 136
AsuC2I CCSGG 1 cut(s) 142
BanI GGYRCC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 25, 148
BceAI ACGGC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 3 cut(s) 14, 29, 137
BlsI GCNGC 3 cut(s) 15, 30, 138
Bme1390I CCNGG 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 38, 51
BmrFI CCNGG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 32, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 94
Bse118I RCCGGY 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 32, 140
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 46, 94
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 25, 148
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 49
BsiSI CCGG 2 cut(s) 17, 142
BslI CCNNNNNNNGG 2 cut(s) 46, 94
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 31
Bsp1407I TGTACA 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 11, 28
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 38, 51
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 32, 140
BssNI GRCGYC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 25, 148
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 32
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 16
CseI GACGC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 109, 155
CviAII CATG 1 cut(s) 33
CviJI RGCY 5 cut(s) 16, 31, 80, 119, 139
CviKI_1 RGCY 5 cut(s) 16, 31, 80, 119, 139
CviQI GTAC 2 cut(s) 109, 155
DdeI CTNAG 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 1 cut(s) 36
FaiI YATR 1 cut(s) 34
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 14, 29, 137
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 14, 29, 137
GluI GCNGC 3 cut(s) 14, 29, 137
HaeIII GGCC 1 cut(s) 31
HapII CCGG 2 cut(s) 17, 142
HgaI GACGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 1 cut(s) 36
HinfI GANTC 2 cut(s) 7, 44
HpaII CCGG 2 cut(s) 17, 142
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 36
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 30, 80, 155
Lsp1109I GCAGC 2 cut(s) 25, 148
MaeII ACGT 1 cut(s) 84
MnlI CCTC 4 cut(s) 50, 98, 126, 138
MroNI GCCGGC 1 cut(s) 16
MspI CCGG 2 cut(s) 17, 142
MspR9I CCNGG 1 cut(s) 142
NaeI GCCGGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 142
NcoI CCATGG 1 cut(s) 32
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 38, 51
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 7, 44
PkrI GCNGC 3 cut(s) 15, 30, 138
PspN4I GGNNCC 2 cut(s) 38, 51
RsaI GTAC 2 cut(s) 110, 156
RsaNI GTAC 2 cut(s) 109, 155
SatI GCNGC 3 cut(s) 14, 29, 137
ScrFI CCNGG 1 cut(s) 142
SetI ASST 3 cut(s) 82, 87, 121
SgeI CNNG 9 cut(s) 29, 45, 53, 70, 95, 101, 107, 153, 154
SsiI CCGC 2 cut(s) 11, 28
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 32
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 42
TatI WGTACW 2 cut(s) 108, 154
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 2 cut(s) 7, 44
TseI GCWGC 2 cut(s) 13, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.