MD08G1050300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0018759
Physical Location & Seq
Forward (+)
3906404 .. 3907160
757 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1050300.v1.1.491

Sequence Viewer

Length: 162 bp
ATGGAGACTCCGCAGCCGGCGTCTCTGCGGCCATGGTTCCTCGAATTGGTGCCGATCGTGGTGGTTCTCCTAATAGTAGCTCATGTCCTCGCTCTGGTGTACTGGATATACAGATTAGCTACTGAGAAGGAGAGGCAGCCCCAGAGGAGAAAAGCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.28

Weight (kDa)

9.98

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018759)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10745 AT5G10745 AT5G10745
malus_domestica MD08G1050300.v1.1 MD15G1044500.v1.1
prunus_persica Prupe.1G398400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0299081
rosa_roxburghii Rroxscaffold_7G00169020
rosa_wichuraiana Rw6G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 2 cut(s) 11, 28
AcoI YGGCCR 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 46, 94
AluBI AGCT 2 cut(s) 80, 119
AluI AGCT 2 cut(s) 80, 119
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 13, 136
BanI GGYRCC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 25, 148
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 3 cut(s) 14, 29, 137
BlsI GCNGC 3 cut(s) 15, 30, 138
BmiI GGNNCC 2 cut(s) 38, 51
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 94
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 46, 94
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 25, 148
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 46, 94
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 54
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 11, 28
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 38, 51
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 32
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 54
BstMCI CGRYCG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 25, 148
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 16
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 100
CviAII CATG 2 cut(s) 33, 83
CviJI RGCY 5 cut(s) 16, 31, 80, 119, 139
CviKI_1 RGCY 5 cut(s) 16, 31, 80, 119, 139
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 2 cut(s) 36, 86
FaiI YATR 3 cut(s) 34, 84, 109
FatI CATG 2 cut(s) 32, 82
Fnu4HI GCNGC 3 cut(s) 14, 29, 137
Fsp4HI GCNGC 3 cut(s) 14, 29, 137
GluI GCNGC 3 cut(s) 14, 29, 137
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 2 cut(s) 36, 86
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 36, 86
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 30, 80, 88, 155
Lsp1109I GCAGC 2 cut(s) 25, 148
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MluCI AATT 1 cut(s) 44
MnlI CCTC 4 cut(s) 50, 98, 126, 138
MroNI GCCGGC 1 cut(s) 16
MspI CCGG 1 cut(s) 17
NaeI GCCGGC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 32
NdeII GATC 1 cut(s) 54
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 36, 86
NlaIV GGNNCC 2 cut(s) 38, 51
PdiI GCCGGC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 15, 30, 138
Ple19I CGATCG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 38, 51
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SatI GCNGC 3 cut(s) 14, 29, 137
Sau3AI GATC 1 cut(s) 54
SetI ASST 2 cut(s) 82, 121
SgeI CNNG 9 cut(s) 29, 45, 53, 70, 95, 101, 107, 115, 154
Sse9I AATT 1 cut(s) 44
SsiI CCGC 2 cut(s) 11, 28
StyI CCWWGG 1 cut(s) 32
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 44
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 31
TseI GCWGC 2 cut(s) 13, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.