AT5G10820

Folate-Biopterin Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0021882
Physical Location & Seq
Reverse (-)
3420700 .. 3423299
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10820.1

Sequence Viewer

Length: 1512 bp
ATGGAAACACTAGAAACTGAGAAATTCTTCTCAGACGATAAACCTCTCCTAAAACCAATTTCAGATCATTCTGAGATCAAGACAAAAGCAAGAAGAAACGCTGTCGTCTCAGTTCTAATTCAGCCCTTCCAATGGTTACAAATGCTGAGTTCTAGGCTAAACCTGAGCTTCGTGCTAGGTGTGGTCCTTGTGTACGGTGTAAACCAAGGGTTCTCTGGTTCGATATTCAAAGTCGTCACAGACTATTACTGGAAAGATGTCCAGCAAGTGCAGCCATCGGTTGTGCAGCTTTACATGGGGTTATATTACATTCCATGGGTCATGAGACCCATTTGGGGTCTCTTCACCGATGTGTTCCCTATCAAAGGTTACAAAAGAAAGCCGTATTTTGTAGTTTCTGGTGTTCTTGGTTTGGTATCTGCGATTGCTATTGTTGTTCTTGGTAAGTTGCCCGCTGCTTTGGCTTTGAGCTGCCTCTTAGGTGTCTCTGCAGCTATGGCCATTGCAGATGTGGTGATTGATGCGTGTATAGCAACAAACAGCATCAATATCCGATCTTTGGCTCCTGATATACAGAGCCTTTGTATGGTTTGTTCATCTGCTGGCGCTTTGGTTGGATACGCAACTAGTGGAGTCTTCGTTCACCAGCTTGGACCTCAGGGAGCATTAGGGGTATTAGCATTTTCGCCTGCAACTATCGTCATACTTGGGTTTTTCATCTACGAGAAAAGATCTTCTACTGTTCCTACACAAAAGACCAAAAAGGACACAGATGGCTTAGGAGTAGCGGTGAAGGGAATGTGCAAAACAGTAAAGTACCCTGAAGTGTGGAAGCCATCTCTTTACATGTTCATATCCTTAGCTCTCAACATCAGCACTCATGAAGGCCACTTCTACTGGTACACTGATCCTACAGCTGGGCCCGCCTTTTCCCAGGAGTTTGTGGGAATAATCTATGCAGTCGGGGCATTGGCATCTATGTTTGGAGTTCTCATATATCACAAGAAGCTCAAAGGCTATTCCTTTAGGAACATACTCTTCTTTGCACAACTTCTATACGTCTTCTCAGGAATGCTTGATCTAGTCTTCATCAAACGCTGGAACTTAACTCTCGGGATACCAGATTCCTTGTTTGTGATAACCGAAGAATCTTTCACGAAGATGATAAGTAAGATCAGGTGGATCCCCATGGTGGTTCTCAGTACAAGGCTTTGTCCTCTGGGAATCGAAGGCACCTTCTTTGCTTTCCTCATGTGCATTGATAGTTTTGGACAGCTTGCTTCTAAATGGGGTGGAGGGTTTGTTCTTCACGCTTTTGGTGTCACGAGACACGATTTCGGAAATCTCTGGCTCGTGATTCTGATAAGGAATATTTTGAGACTCGTCACTGTGTGTTTCGTTTTCCTCGTTCCAGATTCCGATCATTTGGATGATCTTGTACCTTCTGATGTGTTGCCAAAGAAACAATCAGAAGATGATGATGATGACGACATTAAACTTTTGCTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

503

Amino Acids

55.81

Weight (kDa)

8.45

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 69 - 477 1.7e-106 BT1 family
MFS_1 PF07690 70 - 421 9.3e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10820
malus_domestica MD08G1055000.v1.1
prunus_persica Prupe.1G395300_v2.0.a1
pyrus_communis pycom08g04530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1232
AciI CCGC 3 cut(s) 453, 788, 924
AclWI GGATC 3 cut(s) 902, 1177, 1190
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 843
AdeI CACNNNGTG 1 cut(s) 1392
AfaI GTAC 5 cut(s) 194, 818, 902, 1204, 1440
AfiI CCNNNNNNNGG 7 cut(s) 132, 335, 365, 559, 586, 917, 1192
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 1 cut(s) 933
AleI CACNNNNGTG 1 cut(s) 350
AloI GAACNNNNNNTCC 4 cut(s) 624, 656, 1287, 1319
AluBI AGCT 9 cut(s) 168, 289, 471, 494, 649, 863, 917, 1009, 1276
AluI AGCT 9 cut(s) 168, 289, 471, 494, 649, 863, 917, 1009, 1276
Alw26I GTCTC 6 cut(s) 112, 319, 344, 490, 1321, 1372
AlwI GGATC 3 cut(s) 902, 1177, 1190
Ama87I CYCGRG 1 cut(s) 1112
AoxI GGCC 3 cut(s) 498, 886, 920
ApaI GGGCCC 1 cut(s) 924
ApeKI GCWGC 5 cut(s) 271, 286, 455, 471, 491
ApoI RAATTY 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 4 cut(s) 184, 653, 920, 921
AsuHPI GGTGA 4 cut(s) 337, 526, 635, 802
AvaI CYCGRG 1 cut(s) 1112
AvaII GGWCC 2 cut(s) 184, 653
AxyI CCTNAGG 1 cut(s) 657
BaeGI GKGCMC 1 cut(s) 924
BalI TGGCCA 1 cut(s) 500
BamHI GGATCC 1 cut(s) 1182
BanI GGYRCC 1 cut(s) 1232
BanII GRGCYC 1 cut(s) 924
BauI CACGAG 2 cut(s) 1324, 1352
BbsI GAAGAC 3 cut(s) 628, 1054, 1078
BbvI GCAGC 5 cut(s) 283, 298, 442, 458, 503
BccI CCATC 3 cut(s) 283, 767, 844
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 935
BciVI GTATCC 2 cut(s) 611, 1110
BcoDI GTCTC 6 cut(s) 112, 319, 344, 490, 1321, 1372
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 5 cut(s) 11, 153, 176, 627, 1082
BfmI CTRYAG 2 cut(s) 489, 912
BfoI RGCGCY 1 cut(s) 609
BfuI GTATCC 2 cut(s) 611, 1110
BglII AGATCT 1 cut(s) 731
BisI GCNGC 5 cut(s) 272, 287, 456, 472, 492
BlsI GCNGC 5 cut(s) 273, 288, 457, 473, 493
Bme1390I CCNGG 1 cut(s) 935
Bme18I GGWCC 2 cut(s) 184, 653
BmeT110I CYCGRG 1 cut(s) 1112
BmgT120I GGNCC 4 cut(s) 184, 653, 920, 921
BmiI GGNNCC 4 cut(s) 564, 922, 1184, 1234
BmrFI CCNGG 1 cut(s) 935
BmsI GCATC 3 cut(s) 511, 552, 983
BpiI GAAGAC 3 cut(s) 628, 1054, 1078
Bpu10I CCTNAGC 3 cut(s) 164, 778, 859
BsaBI GATNNNNATC 1 cut(s) 1419
BsaI GGTCTC 2 cut(s) 319, 344
BsaJI CCNNGG 4 cut(s) 205, 314, 933, 1188
BsaXI ACNNNNNCTCC 6 cut(s) 624, 654, 774, 804, 1287, 1317
Bsc4I CCNNNNNNNGG 7 cut(s) 132, 335, 365, 559, 586, 917, 1192
Bse1I ACTGG 2 cut(s) 254, 902
Bse21I CCTNAGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 1419
BseBI CCWGG 1 cut(s) 935
BseDI CCNNGG 4 cut(s) 205, 314, 933, 1188
BseGI GGATG 1 cut(s) 1435
BseJI GATNNNNATC 1 cut(s) 1419
BseLI CCNNNNNNNGG 7 cut(s) 132, 335, 365, 559, 586, 917, 1192
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 9 cut(s) 9, 45, 63, 123, 137, 155, 671, 1080, 1213
BseNI ACTGG 2 cut(s) 254, 902
BseSI GKGCMC 1 cut(s) 924
BseXI GCAGC 5 cut(s) 283, 298, 442, 458, 503
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 2 cut(s) 290, 305
BshFI GGCC 3 cut(s) 500, 888, 922
BshNI GGYRCC 1 cut(s) 1232
BsiHKCI CYCGRG 1 cut(s) 1112
BslI CCNNNNNNNGG 7 cut(s) 132, 335, 365, 559, 586, 917, 1192
BsmAI GTCTC 6 cut(s) 112, 319, 344, 490, 1321, 1372
BsmBI CGTCTC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 3 cut(s) 500, 888, 922
Bso31I GGTCTC 2 cut(s) 319, 344
BsoBI CYCGRG 1 cut(s) 1112
Bsp120I GGGCCC 1 cut(s) 920
Bsp1286I GDGCHC 1 cut(s) 924
Bsp19I CCATGG 2 cut(s) 314, 1188
BspACI CCGC 3 cut(s) 453, 788, 924
BspANI GGCC 3 cut(s) 500, 888, 922
BspCNI CTCAG 9 cut(s) 10, 44, 64, 122, 138, 156, 670, 1079, 1212
BspHI TCATGA 2 cut(s) 321, 880
BspLI GGNNCC 4 cut(s) 564, 922, 1184, 1234
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 3 cut(s) 902, 1177, 1190
BspT107I GGYRCC 1 cut(s) 1232
BspTNI GGTCTC 2 cut(s) 319, 344
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 2 cut(s) 254, 902
BssECI CCNNGG 4 cut(s) 205, 314, 933, 1188
BssSI CACGAG 2 cut(s) 1324, 1352
BssT1I CCWWGG 3 cut(s) 205, 314, 1188
Bst2BI CACGAG 2 cut(s) 1324, 1352
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 4 cut(s) 197, 742, 811, 1390
Bst6I CTCTTC 2 cut(s) 347, 1043
BstC8I GCNNGC 5 cut(s) 453, 604, 690, 924, 1278
BstDSI CCRYGG 2 cut(s) 314, 1188
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 1435
BstH2I RGCGCY 1 cut(s) 609
BstHHI GCGC 1 cut(s) 608
BstMAI GTCTC 6 cut(s) 112, 319, 344, 490, 1321, 1372
BstMWI GCNNNNNNNGC 6 cut(s) 271, 461, 497, 530, 923, 965
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 1 cut(s) 850
BstSCI CCNGG 1 cut(s) 933
BstSFI CTRYAG 2 cut(s) 489, 912
BstSLI GKGCMC 1 cut(s) 924
BstV1I GCAGC 5 cut(s) 283, 298, 442, 458, 503
BstV2I GAAGAC 3 cut(s) 628, 1054, 1078
BstX2I RGATCY 2 cut(s) 731, 1182
BstYI RGATCY 2 cut(s) 731, 1182
Bsu36I CCTNAGG 1 cut(s) 657
BsuI GTATCC 2 cut(s) 611, 1110
BsuRI GGCC 3 cut(s) 500, 888, 922
BtgI CCRYGG 2 cut(s) 314, 1188
BtsCI GGATG 1 cut(s) 1435
BtsIMutI CAGTG 2 cut(s) 903, 1386
Cac8I GCNNGC 5 cut(s) 453, 604, 690, 924, 1278
CciI TCATGA 2 cut(s) 321, 880
CfoI GCGC 1 cut(s) 608
Cfr13I GGNCC 4 cut(s) 184, 653, 920, 921
Csp6I GTAC 5 cut(s) 193, 817, 901, 1203, 1439
CviAII CATG 7 cut(s) 295, 315, 322, 847, 881, 1189, 1252
CviQI GTAC 5 cut(s) 193, 817, 901, 1203, 1439
DraIII CACNNNGTG 1 cut(s) 1392
EaeI YGGCCR 1 cut(s) 498
Eam1104I CTCTTC 2 cut(s) 347, 1043
EarI CTCTTC 2 cut(s) 347, 1043
Eco130I CCWWGG 3 cut(s) 205, 314, 1188
Eco24I GRGCYC 1 cut(s) 924
Eco31I GGTCTC 2 cut(s) 319, 344
Eco47I GGWCC 2 cut(s) 184, 653
Eco57I CTGAAG 1 cut(s) 843
Eco81I CCTNAGG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 1112
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 933
EcoT14I CCWWGG 3 cut(s) 205, 314, 1188
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 3 cut(s) 205, 314, 1188
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 7 cut(s) 298, 318, 325, 850, 884, 1192, 1255
FatI CATG 7 cut(s) 294, 314, 321, 846, 880, 1188, 1251
FauI CCCGC 2 cut(s) 460, 931
Fnu4HI GCNGC 5 cut(s) 272, 287, 456, 472, 492
FokI GGATG 1 cut(s) 1442
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 5 cut(s) 272, 287, 456, 472, 492
FspBI CTAG 5 cut(s) 11, 153, 176, 627, 1082
GlaI GCGC 1 cut(s) 607
GluI GCNGC 5 cut(s) 272, 287, 456, 472, 492
GsaI CCCAGC 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 609
HaeIII GGCC 3 cut(s) 500, 888, 922
HhaI GCGC 1 cut(s) 608
Hin1II CATG 7 cut(s) 298, 318, 325, 850, 884, 1192, 1255
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HinfI GANTC 7 cut(s) 633, 1124, 1148, 1224, 1357, 1380, 1415
HphI GGTGA 4 cut(s) 337, 526, 635, 802
Hpy166II GTNNAC 4 cut(s) 193, 202, 643, 903
Hpy188I TCNGA 9 cut(s) 34, 64, 73, 554, 1340, 1362, 1420, 1447, 1471
Hpy8I GTNNAC 4 cut(s) 193, 202, 643, 903
HpyAV CCTTC 6 cut(s) 136, 787, 878, 1223, 1246, 1452
HpyCH4III ACNGT 4 cut(s) 197, 742, 811, 1390
HpyCH4IV ACGT 1 cut(s) 1059
HpyCH4V TGCA 9 cut(s) 271, 286, 491, 506, 692, 804, 959, 1046, 1257
HpyF10VI GCNNNNNNNGC 6 cut(s) 271, 461, 497, 530, 923, 965
HpySE526I ACGT 1 cut(s) 1059
Hsp92II CATG 7 cut(s) 298, 318, 325, 850, 884, 1192, 1255
HspAI GCGC 1 cut(s) 606
LmnI GCTCC 2 cut(s) 568, 662
Lsp1109I GCAGC 5 cut(s) 283, 298, 442, 458, 503
LweI GCATC 3 cut(s) 511, 552, 983
MaeI CTAG 5 cut(s) 11, 153, 176, 627, 1082
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 5 cut(s) 135, 235, 368, 1321, 1384
MflI RGATCY 2 cut(s) 731, 1182
MhlI GDGCHC 1 cut(s) 924
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 3 cut(s) 23, 57, 117
MluNI TGGCCA 1 cut(s) 500
MlyI GAGTC 2 cut(s) 642, 1374
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 7 cut(s) 54, 485, 666, 1227, 1259, 1289, 1415
Mox20I TGGCCA 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 26
MscI TGGCCA 1 cut(s) 500
MseI TTAA 2 cut(s) 1106, 1494
MslI CAYNNNNRTG 3 cut(s) 350, 1160, 1428
Msp20I TGGCCA 1 cut(s) 500
MspA1I CMGCKG 2 cut(s) 455, 917
MspR9I CCNGG 1 cut(s) 935
Mva1269I GAATGC 1 cut(s) 1077
MvaI CCWGG 1 cut(s) 935
MwoI GCNNNNNNNGC 6 cut(s) 271, 461, 497, 530, 923, 965
NcoI CCATGG 2 cut(s) 314, 1188
NlaIII CATG 7 cut(s) 298, 318, 325, 850, 884, 1192, 1255
NlaIV GGNNCC 4 cut(s) 564, 922, 1184, 1234
NmuCI GTSAC 3 cut(s) 235, 1321, 1384
NspI RCATGY 1 cut(s) 850
OliI CACNNNNGTG 1 cut(s) 350
PagI TCATGA 2 cut(s) 321, 880
PciI ACATGT 1 cut(s) 846
PcsI WCGNNNNNNNCGW 1 cut(s) 1404
PctI GAATGC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 5 cut(s) 1124, 1148, 1224, 1357, 1415
PkrI GCNGC 5 cut(s) 273, 288, 457, 473, 493
PleI GAGTC 2 cut(s) 641, 1374
PpsI GAGTC 2 cut(s) 641, 1374
PscI ACATGT 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 933
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 4 cut(s) 564, 922, 1184, 1234
PspOMI GGGCCC 1 cut(s) 920
PspPI GGNCC 4 cut(s) 184, 653, 920, 921
PsrI GAACNNNNNNTAC 2 cut(s) 577, 609
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 731, 1182
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 5 cut(s) 194, 818, 902, 1204, 1440
RsaNI GTAC 5 cut(s) 193, 817, 901, 1203, 1439
RseI CAYNNNNRTG 3 cut(s) 350, 1160, 1428
SaqAI TTAA 2 cut(s) 1106, 1494
SatI GCNGC 5 cut(s) 272, 287, 456, 472, 492
Sau96I GGNCC 4 cut(s) 184, 653, 920, 921
SchI GAGTC 2 cut(s) 642, 1374
ScrFI CCNGG 1 cut(s) 935
SduI GDGCHC 1 cut(s) 924
SfaNI GCATC 3 cut(s) 511, 552, 983
SfcI CTRYAG 2 cut(s) 489, 912
SinI GGWCC 2 cut(s) 184, 653
SmiMI CAYNNNNRTG 3 cut(s) 350, 1160, 1428
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 3 cut(s) 23, 57, 117
SsiI CCGC 3 cut(s) 453, 788, 924
SspI AATATT 1 cut(s) 1372
SspMI CTAG 5 cut(s) 11, 153, 176, 627, 1082
StyD4I CCNGG 1 cut(s) 933
StyI CCWWGG 3 cut(s) 205, 314, 1188
TaaI ACNGT 4 cut(s) 197, 742, 811, 1390
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 2 cut(s) 221, 1227
TasI AATT 3 cut(s) 23, 57, 117
TatI WGTACW 1 cut(s) 1202
TfiI GAWTC 5 cut(s) 1124, 1148, 1224, 1357, 1415
Tru1I TTAA 2 cut(s) 1106, 1494
Tru9I TTAA 2 cut(s) 1106, 1494
TscAI CASTG 2 cut(s) 910, 1393
TseFI GTSAC 3 cut(s) 235, 1321, 1384
TseI GCWGC 5 cut(s) 271, 286, 455, 471, 491
Tsp45I GTSAC 3 cut(s) 235, 1321, 1384
TspDTI ATGAA 5 cut(s) 585, 706, 841, 897, 1078
TspRI CASTG 2 cut(s) 910, 1393
VpaK11BI GGWCC 2 cut(s) 184, 653
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 850
XcmI CCANNNNNNNNNTGG 2 cut(s) 212, 508
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 5 cut(s) 11, 153, 176, 627, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.