Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014895

Physical Location & Seq

Genomic Coordinates Forward (+)

3464098 .. 3466314

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGGAGACTTTGAAAGAAGATTCGATTATGATTCGAGAGGTTTGGGATTACAATTTGGTTGAAGAATTCGCGTTGATCCGTGAGATTGTTGACAAATTCAGCTATATCGCTATGGATACTGAGTTTCCAGGTGTGGTTTTGAAGCCTGTTGCTACTTTCAAGTACAATAACGATCTTAACTACAGGACTCTCAAGGAAAATGTCGATTTGTTGAAATTGATTCAAGTTGGGTTAACTTTTTCTGATGAGAATGGGAATCTTCCGACTTGTGGGACGGATAAGTTCTGCATCTGGCAATTCAATTTCCGTGAGTTCAACATCGGTGAGGATATCTACGCGAGTGAGTCTATTGAGCTGTTGCGTCAGTGTGGGATTGATTTCAAGAAGAACATTGAGAAAGGTATTGATGTGGTTAGGTTTGGTGAGCTTATGATGTCGTCTGGGATTGTTTTGAACGATGCTATCTCGTGGGTTACGTTCCATGGTGGATATGATTTCGGGTATTTGGTTAAGTTGTTGACTTGTAAGGAATTGCCTCTCAAGCAAGCTGATTTCTTCAAGCTTCTGTATGTGTATTTCCCTACGGTTTACGATATCAAGCACTTGATGACGTTCTGCAACGGACTGTTTGGTGGATTGAACAGACTTGCGGAGCTTATGGGAGTGGAGAGAGTTGGGATTTGTCATCAAGCTGGGTCGGATAGCTTGCTCACCTTAGGGTCGTTTAGGAAGCTCAAGGAACGTTATTTCCCGGGATCAACTGAGAAATACACTGGAGTCTTGTATGGTCTAGGTGTGGAAGATGGTACTACTACTACTGTTGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

277

Amino Acids

31.53

Weight (kDa)

4.93

Isoelectric Point (pI)

20.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	15 - 137	3.7e-12	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10960
fragaria_vesca	FvH4_2g40930
malus_domestica	MD08G1058500.v1.1 MD15G1038000.v1.1
prunus_persica	Prupe.1G391900_v2.0.a1
pyrus_communis	pycom08g04840 pycom15g03520
rosa_chinensis	RchiOBHm_Chr6g0299631
rosa_laevigata	RLG00000011401
rosa_roxburghii	Rroxscaffold_7G00168490
rosa_rugosa	Rorug06G0291200
rosa_samantha	Rh6AG402000 Rh6BG410400 Rh6CG416100 Rh6DG403300
rosa_wichuraiana	Rw6G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	74, 341
AciI	CCGC	2 cut(s)	5, 653
AclI	AACGTT	1 cut(s)	745
AclWI	GGATC	2 cut(s)	73, 766
AcsI	RAATTY	2 cut(s)	68, 98
AfaI	GTAC	2 cut(s)	167, 811
AfiI	CCNNNNNNNGG	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	130
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	9 cut(s)	105, 358, 430, 551, 565, 658, 695, 708, 736
AluI	AGCT	9 cut(s)	105, 358, 430, 551, 565, 658, 695, 708, 736
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	73, 766
Ama87I	CYCGRG	1 cut(s)	754
ApoI	RAATTY	2 cut(s)	68, 98
AsuC2I	CCSGG	2 cut(s)	755, 756
AsuHPI	GGTGA	3 cut(s)	338, 437, 706
AvaI	CYCGRG	1 cut(s)	754
AxyI	CCTNAGG	1 cut(s)	718
BauI	CACGAG	1 cut(s)	469
BccI	CCATC	1 cut(s)	800
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	755, 756
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	794
BfmI	CTRYAG	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	112
Bme1390I	CCNGG	3 cut(s)	132, 755, 756
BmeT110I	CYCGRG	1 cut(s)	754
BmrFI	CCNGG	3 cut(s)	132, 755, 756
BmsI	GCATC	2 cut(s)	300, 451
BpmI	CTGGAG	1 cut(s)	798
BpuEI	CTTGAG	3 cut(s)	179, 527, 722
BpuMI	CCSGG	2 cut(s)	755, 756
BsaJI	CCNNGG	2 cut(s)	484, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	781
Bse21I	CCTNAGG	1 cut(s)	718
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	484, 754
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	114, 756
BseNI	ACTGG	1 cut(s)	781
BseYI	CCCAGC	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	74, 341
BsiHKCI	CYCGRG	1 cut(s)	754
BsiSI	CCGG	1 cut(s)	755
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	754
Bsp143I	GATC	3 cut(s)	78, 175, 758
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	2 cut(s)	5, 653
BspCNI	CTCAG	2 cut(s)	115, 757
BspFNI	CGCG	2 cut(s)	74, 341
BspPI	GGATC	2 cut(s)	73, 766
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	2 cut(s)	484, 754
BssMI	GATC	3 cut(s)	78, 175, 758
BssSI	CACGAG	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	3 cut(s)	589, 630, 823
BstC8I	GCNNGC	2 cut(s)	549, 710
BstDEI	CTNAG	3 cut(s)	123, 718, 765
BstDSI	CCRYGG	1 cut(s)	484
BstFNI	CGCG	2 cut(s)	74, 341
BstKTI	GATC	3 cut(s)	81, 178, 761
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	3 cut(s)	78, 175, 758
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	3 cut(s)	130, 753, 754
BstSFI	CTRYAG	1 cut(s)	184
BstUI	CGCG	2 cut(s)	74, 341
Bsu36I	CCTNAGG	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	374, 774
Cac8I	GCNNGC	2 cut(s)	549, 710
Cfr9I	CCCGGG	1 cut(s)	754
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	166, 810
CviAII	CATG	1 cut(s)	485
CviQI	GTAC	2 cut(s)	166, 810
DdeI	CTNAG	3 cut(s)	123, 718, 765
DpnI	GATC	3 cut(s)	80, 177, 760
DpnII	GATC	3 cut(s)	78, 175, 758
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	484
Eco32I	GATATC	2 cut(s)	334, 598
Eco81I	CCTNAGG	1 cut(s)	718
Eco88I	CYCGRG	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	2 cut(s)	334, 598
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	1 cut(s)	488
FaiI	YATR	9 cut(s)	32, 108, 116, 434, 486, 495, 573, 662, 789
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	484
FspBI	CTAG	1 cut(s)	794
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	1 cut(s)	798
HapII	CCGG	1 cut(s)	755
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	488
HincII	GTYRAC	3 cut(s)	94, 237, 522
HindII	GTYRAC	3 cut(s)	94, 237, 522
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	7 cut(s)	23, 34, 190, 223, 259, 347, 780
HpaI	GTTAAC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	3 cut(s)	338, 437, 706
Hpy166II	GTNNAC	4 cut(s)	94, 237, 522, 592
Hpy188I	TCNGA	3 cut(s)	247, 267, 703
Hpy188III	TCNNGA	2 cut(s)	38, 385
Hpy8I	GTNNAC	4 cut(s)	94, 237, 522, 592
HpyCH4III	ACNGT	3 cut(s)	589, 630, 823
HpyCH4IV	ACGT	3 cut(s)	479, 614, 745
HpyCH4V	TGCA	2 cut(s)	291, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	3 cut(s)	123, 718, 765
HpySE526I	ACGT	3 cut(s)	479, 614, 745
Hsp92II	CATG	1 cut(s)	488
KspAI	GTTAAC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	78, 175, 758
LmnI	GCTCC	1 cut(s)	655
LpnPI	CCDG	9 cut(s)	117, 144, 162, 172, 280, 429, 681, 762, 768
LweI	GCATC	2 cut(s)	300, 451
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	3 cut(s)	479, 614, 745
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	3 cut(s)	80, 177, 760
MboI	GATC	3 cut(s)	78, 175, 758
MboII	GAAGA	6 cut(s)	32, 77, 254, 400, 550, 815
MluCI	AATT	8 cut(s)	55, 68, 98, 218, 299, 304, 533, 829
MlyI	GAGTC	3 cut(s)	184, 356, 789
MmeI	TCCRAC	2 cut(s)	290, 681
MnlI	CCTC	3 cut(s)	34, 322, 549
MseI	TTAA	4 cut(s)	180, 236, 513, 832
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	3 cut(s)	132, 755, 756
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	2 cut(s)	74, 341
MwoI	GCNNNNNNNGC	1 cut(s)	544
NciI	CCSGG	2 cut(s)	755, 756
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	3 cut(s)	78, 175, 758
NlaIII	CATG	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PfeI	GAWTC	4 cut(s)	23, 34, 223, 259
PleI	GAGTC	3 cut(s)	184, 355, 788
PpsI	GAGTC	3 cut(s)	184, 355, 788
Psp1406I	AACGTT	1 cut(s)	745
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	167, 811
RsaNI	GTAC	2 cut(s)	166, 810
SaqAI	TTAA	4 cut(s)	180, 236, 513, 832
Sau3AI	GATC	3 cut(s)	78, 175, 758
SchI	GAGTC	3 cut(s)	184, 356, 789
ScrFI	CCNGG	3 cut(s)	132, 755, 756
SfaNI	GCATC	2 cut(s)	300, 451
SfcI	CTRYAG	1 cut(s)	184
SmaI	CCCGGG	1 cut(s)	756
SmlI	CTYRAG	3 cut(s)	194, 542, 737
SmoI	CTYRAG	3 cut(s)	194, 542, 737
Sse9I	AATT	8 cut(s)	55, 68, 98, 218, 299, 304, 533, 829
SsiI	CCGC	2 cut(s)	5, 653
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	3 cut(s)	130, 753, 754
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	589, 630, 823
TaiI	ACGT	3 cut(s)	482, 617, 748
TaqI	TCGA	3 cut(s)	26, 37, 207
TasI	AATT	8 cut(s)	55, 68, 98, 218, 299, 304, 533, 829
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	4 cut(s)	23, 34, 223, 259
Tru1I	TTAA	4 cut(s)	180, 236, 513, 832
Tru9I	TTAA	4 cut(s)	180, 236, 513, 832
TscAI	CASTG	2 cut(s)	374, 781
TspGWI	ACGGA	4 cut(s)	71, 293, 299, 639
TspMI	CCCGGG	1 cut(s)	754
TspRI	CASTG	2 cut(s)	374, 781
XapI	RAATTY	2 cut(s)	68, 98
XmaI	CCCGGG	1 cut(s)	754
XspI	CTAG	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.