Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014895

Physical Location & Seq

Genomic Coordinates Reverse (-)

34908862 .. 34910609

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G391900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCGATTTTACCGAAAGGGGATTCGATTCAAATCCGAGAAGTGTGGAGTGATAATCTTGATGAAGAGTTTGCTATAATCCGTGAGATTGTTGGGACGTATAATTATGTTGCTATGGACACCGAGTTCCCCGGTGTGGTTCTTCGCCCGGTGGGGGCCTTCAAGAACATCAATGATTATAACTACCAGACCCTGAAGGACAATGTCGATATGTTGAAATTGATTCAATTGGGTCTCACTTTCTCTGACAAGAATGGTAAACTTCCTGATCTCGATACCCAGAACCAATACATTTGGCAATTCAATTTCCGTGAGTTCAATGTAAGCGAAGACATCTTTGCTAGCGATTCGATTGAGTTGCTGCGGCAATGTGGGATTGATTTTAAGAAGAACAACGAGAAGGGAATTGATGTGAAGCGGTTTGGTGAGCTTTTGGTGTCTTCAGGGGTTGTATTGAATGCTGAAGTGCATTGGGTTACTTTTCATAGTGGATATGACTTTGGATACTTGCTTAAGCTATTGACTGGTCTGAGTTTGCCCGACTCCCAAGCGGGTTTCTTTGAATTGATCAAGGCCTTCTTCCCAGTGGTGTATGATATCAAGCATTTGATGAAGTTCTGCAATAGCCTTCATGGTGGGTTGAACAAGCTTGCAGAATTGTTGGAAGTGGAAAGAGTTGGTGTGTGCCATCAAGCAGGCTCAGACAGTTTGCTTACAGCTTGTACGTTTAGGAAATTGAGGGATACCTTTTTCGGTGGCACAGCTGAGAAATATGCTGGTGTATTGTATGGTCTCGGTGTTGAGAATGGACAGAGTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

275

Amino Acids

30.89

Weight (kDa)

5.02

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10960
fragaria_vesca	FvH4_2g40930
malus_domestica	MD08G1058500.v1.1 MD15G1038000.v1.1
prunus_persica	Prupe.1G391900_v2.0.a1
pyrus_communis	pycom08g04840 pycom15g03520
rosa_chinensis	RchiOBHm_Chr6g0299631
rosa_laevigata	RLG00000011401
rosa_roxburghii	Rroxscaffold_7G00168490
rosa_rugosa	Rorug06G0291200
rosa_samantha	Rh6AG402000 Rh6BG410400 Rh6CG416100 Rh6DG403300
rosa_wichuraiana	Rw6G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AciI	CCGC	3 cut(s)	364, 418, 551
AcuI	CTGAAG	3 cut(s)	215, 426, 483
AfaI	GTAC	2 cut(s)	724, 817
AfiI	CCNNNNNNNGG	2 cut(s)	136, 154
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	9 cut(s)	32, 163, 217, 227, 304, 319, 457, 563, 643
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	5 cut(s)	430, 517, 649, 719, 764
AluI	AGCT	5 cut(s)	430, 517, 649, 719, 764
Alw26I	GTCTC	2 cut(s)	239, 797
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	2 cut(s)	156, 573
ApeKI	GCWGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	2 cut(s)	132, 149
AsuHPI	GGTGA	1 cut(s)	437
AsuNHI	GCTAGC	1 cut(s)	341
BbsI	GAAGAC	2 cut(s)	336, 432
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	696
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciVI	GTATCC	2 cut(s)	497, 736
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	132, 149
BcoDI	GTCTC	2 cut(s)	239, 797
BfaI	CTAG	1 cut(s)	342
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	2 cut(s)	497, 736
BisI	GCNGC	2 cut(s)	362, 365
BlsI	GCNGC	2 cut(s)	363, 366
BmcAI	AGTACT	1 cut(s)	817
Bme1390I	CCNGG	2 cut(s)	132, 149
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	132, 149
BmrI	ACTGGG	1 cut(s)	578
BmtI	GCTAGC	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	578
BpiI	GAAGAC	2 cut(s)	336, 432
BpuMI	CCSGG	2 cut(s)	132, 149
BsaBI	GATNNNNATC	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	239, 797
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 154
Bse1I	ACTGG	2 cut(s)	529, 584
Bse3DI	GCAATG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	130
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	136, 154
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	3 cut(s)	521, 714, 756
BseNI	ACTGG	2 cut(s)	529, 584
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	2 cut(s)	158, 575
BsiSI	CCGG	2 cut(s)	132, 149
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	136, 154
BsmAI	GTCTC	2 cut(s)	239, 797
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	158, 575
Bso31I	GGTCTC	2 cut(s)	239, 797
Bsp143I	GATC	2 cut(s)	268, 567
BspACI	CCGC	3 cut(s)	364, 418, 551
BspANI	GGCC	2 cut(s)	158, 575
BspCNI	CTCAG	3 cut(s)	522, 713, 757
BspLI	GGNNCC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	345
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	2 cut(s)	239, 797
BsrDI	GCAATG	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	529, 584
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	268, 567
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	343, 651, 697
BstDEI	CTNAG	3 cut(s)	530, 700, 765
BstKTI	GATC	2 cut(s)	271, 570
BstMAI	GTCTC	2 cut(s)	239, 797
BstMBI	GATC	2 cut(s)	268, 567
BstSCI	CCNGG	2 cut(s)	130, 147
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	2 cut(s)	336, 432
BsuI	GTATCC	2 cut(s)	497, 736
BsuRI	GGCC	2 cut(s)	158, 575
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	343, 651, 697
CaiI	CAGNNNCTG	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	723, 816
CviAII	CATG	1 cut(s)	632
CviJI	RGCY	9 cut(s)	158, 430, 517, 575, 627, 649, 699, 719, 764
CviKI_1	RGCY	9 cut(s)	158, 430, 517, 575, 627, 649, 699, 719, 764
CviQI	GTAC	2 cut(s)	723, 816
DdeI	CTNAG	3 cut(s)	530, 700, 765
DpnI	GATC	2 cut(s)	270, 569
DpnII	GATC	2 cut(s)	268, 567
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	575
Eco31I	GGTCTC	2 cut(s)	239, 797
Eco32I	GATATC	1 cut(s)	598
Eco57I	CTGAAG	3 cut(s)	215, 426, 483
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	598
FaeI	CATG	1 cut(s)	635
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	631
FauI	CCCGC	1 cut(s)	544
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	362, 365
Fsp4HI	GCNGC	2 cut(s)	362, 365
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	2 cut(s)	362, 365
HaeIII	GGCC	2 cut(s)	158, 575
HapII	CCGG	2 cut(s)	132, 149
Hin1II	CATG	1 cut(s)	635
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	5 cut(s)	23, 28, 223, 347, 542
HpaII	CCGG	2 cut(s)	132, 149
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	38, 247, 531, 703
Hpy188III	TCNNGA	4 cut(s)	59, 163, 266, 272
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	5 cut(s)	169, 190, 394, 586, 638
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4IV	ACGT	2 cut(s)	98, 725
HpyCH4V	TGCA	3 cut(s)	469, 621, 653
HpyF3I	CTNAG	3 cut(s)	530, 700, 765
HpySE526I	ACGT	2 cut(s)	98, 725
Hsp92II	CATG	1 cut(s)	635
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	268, 567
Lsp1109I	GCAGC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	98, 725
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	270, 569
MboI	GATC	2 cut(s)	268, 567
MboII	GAAGA	6 cut(s)	77, 134, 341, 400, 432, 571
MfeI	CAATTG	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	1 cut(s)	732
MseI	TTAA	2 cut(s)	384, 513
MspA1I	CMGCKG	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	2 cut(s)	132, 149
MspR9I	CCNGG	2 cut(s)	132, 149
MunI	CAATTG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	463
NciI	CCSGG	2 cut(s)	132, 149
NdeII	GATC	2 cut(s)	268, 567
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	635
NlaIV	GGNNCC	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	4 cut(s)	23, 28, 223, 347
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	363, 366
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
PsiI	TTATAA	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	2 cut(s)	724, 817
RsaNI	GTAC	2 cut(s)	723, 816
SaqAI	TTAA	2 cut(s)	384, 513
SatI	GCNGC	2 cut(s)	362, 365
Sau3AI	GATC	2 cut(s)	268, 567
Sau96I	GGNCC	1 cut(s)	156
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	132, 149
SetI	ASST	8 cut(s)	101, 432, 519, 651, 721, 728, 749, 766
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	3 cut(s)	364, 418, 551
SspMI	CTAG	1 cut(s)	342
StuI	AGGCCT	1 cut(s)	575
StyD4I	CCNGG	2 cut(s)	130, 147
TaaI	ACNGT	1 cut(s)	707
TaiI	ACGT	2 cut(s)	101, 728
TaqI	TCGA	5 cut(s)	5, 26, 207, 273, 350
TatI	WGTACW	1 cut(s)	815
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	4 cut(s)	23, 28, 223, 347
Tru1I	TTAA	2 cut(s)	384, 513
Tru9I	TTAA	2 cut(s)	384, 513
TscAI	CASTG	1 cut(s)	591
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	78, 473, 620, 626
TspGWI	ACGGA	2 cut(s)	71, 299
TspRI	CASTG	1 cut(s)	591
Tth111I	GACNNNGTC	1 cut(s)	203
Vha464I	CTTAAG	1 cut(s)	512
XspI	CTAG	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.