Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014895

Physical Location & Seq

Genomic Coordinates Forward (+)

44200132 .. 44200503

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0291200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCACCAATTCTGAAGTTTCTCAGCCTGGCTTTGATTTTCAGTGTGACTGTAGGAGTGGACTGTCAGTGCTCTAAGAACAGGCTCAAAGTCACACAGTATCGAACAGGAGAGTTGTTGCGAAACAAGCCAGTGTGGAGGGTGAAGATCACCAATGACTGCCCATGTACTCAACTCGATGTTAAACTAAGTTGCAAGGGATTTCAAGCCGTGAAAGATATTGGTCCTAAGCCAGTCTTGGCCAAATCCGGTGGCGAGTGTCTCCTCAACGATGGCCAACCTATCTATGCGCACGAGGATTTCATTTTCACCTATGCTTTTGGCACTCGGTTTCCTTTTCACCTGCTCTCCTCCCGAATTGCCTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

9.19

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	26 - 118	4.3e-26	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10960
fragaria_vesca	FvH4_2g40930
malus_domestica	MD08G1058500.v1.1 MD15G1038000.v1.1
prunus_persica	Prupe.1G391900_v2.0.a1
pyrus_communis	pycom08g04840 pycom15g03520
rosa_chinensis	RchiOBHm_Chr6g0299631
rosa_laevigata	RLG00000011401
rosa_roxburghii	Rroxscaffold_7G00168490
rosa_rugosa	Rorug06G0291200
rosa_samantha	Rh6AG402000 Rh6BG410400 Rh6CG416100 Rh6DG403300
rosa_wichuraiana	Rw6G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	351
Acc16I	TGCGCA	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	4
AcoI	YGGCCR	2 cut(s)	240, 274
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	240, 274
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	4 cut(s)	142, 154, 301, 332
AvaII	GGWCC	1 cut(s)	224
BalI	TGGCCA	2 cut(s)	242, 276
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	351
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bse1I	ACTGG	2 cut(s)	131, 233
BseBI	CCWGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	2 cut(s)	131, 233
BseRI	GAGGAG	2 cut(s)	254, 340
BshFI	GGCC	2 cut(s)	242, 276
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	242, 276
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	242, 276
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	131, 233
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	52, 65, 99
BstDEI	CTNAG	4 cut(s)	23, 75, 188, 228
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	242, 276
BtsIMutI	CAGTG	3 cut(s)	49, 74, 138
BveI	ACCTGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	8 cut(s)	27, 32, 85, 130, 209, 232, 242, 276
CviKI_1	RGCY	8 cut(s)	27, 32, 85, 130, 209, 232, 242, 276
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	23, 75, 188, 228
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	2 cut(s)	240, 274
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	168
FaiI	YATR	3 cut(s)	166, 288, 315
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	1 cut(s)	164
FspAI	RTGCGCAY	1 cut(s)	291
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	242, 276
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	4 cut(s)	142, 154, 301, 332
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4III	ACNGT	3 cut(s)	52, 65, 99
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	4 cut(s)	23, 75, 188, 228
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	8 cut(s)	14, 41, 67, 93, 144, 246, 262, 356
MaeIII	GTNAC	2 cut(s)	46, 91
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	2 cut(s)	242, 276
MluCI	AATT	2 cut(s)	9, 357
MluNI	TGGCCA	2 cut(s)	242, 276
MnlI	CCTC	4 cut(s)	132, 275, 289, 361
Mox20I	TGGCCA	2 cut(s)	242, 276
MscI	TGGCCA	2 cut(s)	242, 276
MseI	TTAA	2 cut(s)	183, 370
Msp20I	TGGCCA	2 cut(s)	242, 276
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	46, 91
NsbI	TGCGCA	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	183, 370
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	3 cut(s)	283, 314, 345
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	9, 357
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	52, 65, 99
TaqI	TCGA	2 cut(s)	103, 177
TasI	AATT	2 cut(s)	9, 357
TatI	WGTACW	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	183, 370
Tru9I	TTAA	2 cut(s)	183, 370
TscAI	CASTG	3 cut(s)	49, 74, 138
TseFI	GTSAC	2 cut(s)	46, 91
Tsp45I	GTSAC	2 cut(s)	46, 91
TspDTI	ATGAA	1 cut(s)	292
TspRI	CASTG	3 cut(s)	49, 74, 138
VpaK11BI	GGWCC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.