Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019133

Physical Location & Seq

Genomic Coordinates Forward (+)

3931349 .. 3935142

Gene Structure 3794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCAACGACTTCTCGCCGGTTTACCACCGGTTTATTCGCCTCGATCACCTCGGTCAAATCCCATTCCGCAAACCGACCTCAATCCATCTCCCTAATCCGTCGAAACCACATCGATCATCGTCTACCGTTGATCGTTCCAAGTTCCAGGCGGTGGATTATCCAAGCGGCGAGATCCTGGGATGGATTTGACGACGGAGCTGAGGCGGAGATTAAGAAGCCAGGCGCGTATGGTTACGCGATCGGCGATAACGAGATCGAAGGGAGCAGTAGTAGTACTGTCCATGTGATCGACGGAGAGCATGTTAAGACGGCGGAGATAGTGATATGGGCGGCGGTTACGGCGGCGTTTGGCGTCGGAAACAGAGTGATGTATAAGCTCGCGTTAGTTCCACTCAAGGAGTATCCTTTCTTCCTTGCGCAACTCTCCACCTTCGGGTATGTAGCTGTATATTATACTATCTTGTATTTTCGATATCGTGCTGGAACTGTCACAGATGCAATGCTCTCGGTGCCAAAATCTCCATTTTTAATTGTTGGCATCTTAGAGGCTCTAGCTGCAGCTGCTGGCATGGCAGCCGCAGCGAATCTTTCGGGGCCATCAACGACAGTTTTATCTCAGACATTTCTTGTCTGGCAAATTTTCTTCTCCATTATTTTTCTCGGGAGGAGATATAGCGTAAACCAAATACTCGGATGTACTCTTGTAGCTCTCGGTGTAATCGTCAGTGTGGCAAGTGGATCAGGTGCTGCTCATTCATTGAATGAAGCCGGAGTATTATGGATTCTTCTAATGGTTCTCTCTTTCTTGCTTCAAGGAGCAGGTACAGTATTGAAGGAAGTCATCTTTATAGATAGCCAAAGACGATTAAAGGGTGCTTCACTCGATCTATTTATAGTAAATTCATATGGTTCAGCTTTCCAAGCCATCTGCATTGCGTTGCTTCTTCCATTTCTTTCAAAACTTTGGGGCATACCGTTTAACCAACTCGGTACCTACCTAAAAGATGGTGCGGTTTGTTTTCTCAACAATGGGACAATAACAAAAGGATGTGATGGGGCTCCGTTTTTGCCTCTGTTGTTTGTGATAATGAACATTGGCTATAACATTGCTCTTTTAAGACTCCTCAAGATTTCATCCGCGGTGGTTTCATGTCTTGCATCAACAGTCTCAGTGCCAATTGCAGTGTTTCTGTTCACAATGCCATTACCGTACCTTGGAGTTGCATCATCACTACCAAAAGGGTTCATGGGAGGAACAATCATACTTGTATTGGGAATGATTCTTTATAGTTGGACACCACACGGAGCTAACTCTTCTCATACTGATTCAGTCATTCCTTCACCTCCTCCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

452

Amino Acids

48.47

Weight (kDa)

9.28

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRT-like	PF08627	111 - 430	1.6e-41	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12170 AT5G12170 AT5G19380 AT5G19380
malus_domestica	MD03G1165200.v1.1
prunus_persica	Prupe.4G263900_v2.0.a1 Prupe.4G263900_v2.0.a1
pyrus_communis	pycom03g11980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
Acc36I	ACCTGC	1 cut(s)	812
Acc65I	GGTACC	1 cut(s)	992
AccB1I	GGYRCC	2 cut(s)	511, 992
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	124
AccII	CGCG	4 cut(s)	227, 239, 383, 1142
AclWI	GGATC	2 cut(s)	168, 748
AcsI	RAATTY	2 cut(s)	639, 901
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	5 cut(s)	277, 700, 826, 994, 1214
AfiI	CCNNNNNNNGG	3 cut(s)	153, 435, 1217
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	763, 815, 835, 960
AjnI	CCWGG	3 cut(s)	146, 176, 220
AluBI	AGCT	8 cut(s)	200, 379, 446, 557, 563, 710, 917, 1310
AluI	AGCT	8 cut(s)	200, 379, 446, 557, 563, 710, 917, 1310
Alw26I	GTCTC	1 cut(s)	1174
AlwI	GGATC	2 cut(s)	168, 748
AlwNI	CAGNNNCTG	2 cut(s)	566, 749
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	6 cut(s)	557, 560, 563, 575, 581, 749
ApoI	RAATTY	2 cut(s)	639, 901
AsiGI	ACCGGT	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	992
AspLEI	GCGC	2 cut(s)	227, 421
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	2 cut(s)	40, 1335
AvaI	CYCGRG	1 cut(s)	662
BanI	GGYRCC	2 cut(s)	511, 992
BanII	GRGCYC	1 cut(s)	1063
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	544, 550, 572, 587, 593, 736
BccI	CCATC	6 cut(s)	95, 176, 607, 935, 1001, 1049
BceAI	ACGGC	2 cut(s)	327, 357
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BciT130I	CCWGG	3 cut(s)	148, 178, 222
BciVI	GTATCC	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	1174
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	414
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	3 cut(s)	148, 178, 222
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	4 cut(s)	513, 597, 994, 1062
BmrFI	CCNGG	3 cut(s)	148, 178, 222
BmsI	GCATC	4 cut(s)	487, 549, 1169, 1235
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	380, 1112
Bsa29I	ATCGAT	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	51, 177, 1140, 1216
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 288, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 435, 1217
Bse118I	RCCGGY	2 cut(s)	18, 29
Bse3DI	GCAATG	3 cut(s)	507, 933, 1107
BseBI	CCWGG	3 cut(s)	148, 178, 222
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	4 cut(s)	51, 177, 1140, 1216
BseGI	GGATG	4 cut(s)	187, 701, 1055, 1136
BseLI	CCNNNNNNNGG	3 cut(s)	153, 435, 1217
BseMI	GCAATG	3 cut(s)	507, 933, 1107
BseMII	CTCAG	3 cut(s)	192, 632, 1185
BseRI	GAGGAG	3 cut(s)	682, 1115, 1338
BseXI	GCAGC	6 cut(s)	544, 550, 572, 587, 593, 736
Bsh1236I	CGCG	4 cut(s)	227, 239, 383, 1142
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	598
BshNI	GGYRCC	2 cut(s)	511, 992
BshTI	ACCGGT	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	3 cut(s)	19, 30, 771
BslFI	GGGAC	1 cut(s)	1048
BslI	CCNNNNNNNGG	3 cut(s)	153, 435, 1217
BsmAI	GTCTC	1 cut(s)	1174
BsmFI	GGGAC	1 cut(s)	1048
BsnI	GGCC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	1063
Bsp143I	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	3 cut(s)	193, 631, 1184
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	4 cut(s)	227, 239, 383, 1142
BspLI	GGNNCC	4 cut(s)	513, 597, 994, 1062
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	812
BspPI	GGATC	2 cut(s)	168, 748
BspT107I	GGYRCC	2 cut(s)	511, 992
BsrDI	GCAATG	3 cut(s)	507, 933, 1107
BsrFI	RCCGGY	2 cut(s)	18, 29
BssAI	RCCGGY	2 cut(s)	18, 29
BssECI	CCNNGG	4 cut(s)	51, 177, 1140, 1216
BssMI	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	1216
Bst2UI	CCWGG	3 cut(s)	148, 178, 222
Bst4CI	ACNGT	8 cut(s)	129, 280, 490, 610, 829, 978, 1168, 1212
Bst6I	CTCTTC	1 cut(s)	1321
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	381, 568
BstDEI	CTNAG	4 cut(s)	201, 544, 618, 1171
BstDSI	CCRYGG	1 cut(s)	1140
BstF5I	GGATG	4 cut(s)	187, 701, 1055, 1136
BstFNI	CGCG	4 cut(s)	227, 239, 383, 1142
BstHHI	GCGC	2 cut(s)	227, 421
BstKTI	GATC	9 cut(s)	48, 118, 135, 176, 243, 258, 291, 743, 889
BstMAI	GTCTC	1 cut(s)	1174
BstMBI	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	7 cut(s)	341, 511, 557, 563, 572, 581, 923
BstNI	CCWGG	3 cut(s)	148, 178, 222
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	146, 176, 220
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	4 cut(s)	227, 239, 383, 1142
BstV1I	GCAGC	6 cut(s)	544, 550, 572, 587, 593, 736
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	598
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	1140
BtsCI	GGATG	4 cut(s)	187, 701, 1055, 1136
BtsI	GCAGTG	1 cut(s)	1191
BtsIMutI	CAGTG	3 cut(s)	733, 1179, 1191
BveI	ACCTGC	1 cut(s)	812
Cac8I	GCNNGC	2 cut(s)	381, 568
CaiI	CAGNNNCTG	2 cut(s)	566, 749
CfoI	GCGC	2 cut(s)	227, 421
Cfr10I	RCCGGY	2 cut(s)	18, 29
Cfr13I	GGNCC	1 cut(s)	596
Cfr42I	CCGCGG	1 cut(s)	1143
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	5 cut(s)	276, 699, 825, 993, 1213
CspAI	ACCGGT	1 cut(s)	29
CviAII	CATG	5 cut(s)	284, 302, 571, 1152, 1249
CviQI	GTAC	5 cut(s)	276, 699, 825, 993, 1213
DdeI	CTNAG	4 cut(s)	201, 544, 618, 1171
DpnI	GATC	9 cut(s)	47, 117, 134, 175, 242, 257, 290, 742, 888
DpnII	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
Eam1104I	CTCTTC	1 cut(s)	1321
EarI	CTCTTC	1 cut(s)	1321
EciI	GGCGGA	2 cut(s)	221, 329
Eco130I	CCWWGG	1 cut(s)	1216
Eco24I	GRGCYC	1 cut(s)	1063
Eco32I	GATATC	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	662
EcoRII	CCWGG	3 cut(s)	146, 176, 220
EcoRV	GATATC	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	1216
EcoT38I	GRGCYC	1 cut(s)	1063
ErhI	CCWWGG	1 cut(s)	1216
FaeI	CATG	5 cut(s)	287, 305, 574, 1155, 1252
FaqI	GGGAC	1 cut(s)	1048
FatI	CATG	5 cut(s)	283, 301, 570, 1151, 1248
FauNDI	CATATG	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	124
FokI	GGATG	4 cut(s)	194, 708, 1062, 1123
FriOI	GRGCYC	1 cut(s)	1063
FspBI	CTAG	1 cut(s)	554
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	2 cut(s)	226, 420
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	3 cut(s)	19, 30, 771
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	2 cut(s)	227, 421
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	5 cut(s)	287, 305, 574, 1155, 1252
Hin6I	GCGC	2 cut(s)	225, 419
HinP1I	GCGC	2 cut(s)	225, 419
HinfI	GANTC	5 cut(s)	586, 784, 1122, 1282, 1328
HpaII	CCGG	3 cut(s)	19, 30, 771
HphI	GGTGA	2 cut(s)	40, 1335
Hpy166II	GTNNAC	4 cut(s)	24, 125, 682, 1197
Hpy188I	TCNGA	3 cut(s)	359, 621, 695
Hpy188III	TCNNGA	2 cut(s)	664, 1129
Hpy8I	GTNNAC	4 cut(s)	24, 125, 682, 1197
Hpy99I	CGWCG	4 cut(s)	105, 197, 296, 359
HpyAV	CCTTC	4 cut(s)	254, 442, 829, 1350
HpyCH4III	ACNGT	8 cut(s)	129, 280, 490, 610, 829, 978, 1168, 1212
HpyCH4V	TGCA	6 cut(s)	500, 560, 933, 1160, 1184, 1226
HpyF10VI	GCNNNNNNNGC	7 cut(s)	341, 511, 557, 563, 572, 581, 923
HpyF3I	CTNAG	4 cut(s)	201, 544, 618, 1171
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	287, 305, 574, 1155, 1252
HspAI	GCGC	2 cut(s)	225, 419
KpnI	GGTACC	1 cut(s)	996
KspI	CCGCGG	1 cut(s)	1143
Kzo9I	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
LmnI	GCTCC	5 cut(s)	197, 264, 818, 1066, 1307
Lsp1109I	GCAGC	6 cut(s)	544, 550, 572, 587, 593, 736
LweI	GCATC	4 cut(s)	487, 549, 1169, 1235
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	3 cut(s)	233, 337, 490
MalI	GATC	9 cut(s)	47, 117, 134, 175, 242, 257, 290, 742, 888
MboI	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
MboII	GAAGA	5 cut(s)	403, 637, 779, 938, 1308
MfeI	CAATTG	1 cut(s)	1179
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	1063
MluCI	AATT	4 cut(s)	531, 639, 901, 1179
MlyI	GAGTC	1 cut(s)	1116
MmeI	TCCRAC	2 cut(s)	337, 1274
MseI	TTAA	6 cut(s)	213, 306, 530, 869, 981, 1118
MspA1I	CMGCKG	2 cut(s)	563, 1142
MspI	CCGG	3 cut(s)	19, 30, 771
MspR9I	CCNGG	3 cut(s)	148, 178, 222
MunI	CAATTG	1 cut(s)	1179
MvaI	CCWGG	3 cut(s)	148, 178, 222
MvnI	CGCG	4 cut(s)	227, 239, 383, 1142
MwoI	GCNNNNNNNGC	7 cut(s)	341, 511, 557, 563, 572, 581, 923
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
NlaIII	CATG	5 cut(s)	287, 305, 574, 1155, 1252
NlaIV	GGNNCC	4 cut(s)	513, 597, 994, 1062
NmuCI	GTSAC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	420
NspI	RCATGY	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	3 cut(s)	243, 249, 720
PfeI	GAWTC	4 cut(s)	586, 784, 1282, 1328
PflMI	CCANNNNNTGG	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	29
Ple19I	CGATCG	1 cut(s)	243
PleI	GAGTC	1 cut(s)	1116
PpsI	GAGTC	1 cut(s)	1116
Psp6I	CCWGG	3 cut(s)	146, 176, 220
PspGI	CCWGG	3 cut(s)	146, 176, 220
PspN4I	GGNNCC	4 cut(s)	513, 597, 994, 1062
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	2 cut(s)	566, 749
PsuI	RGATCY	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	5 cut(s)	277, 700, 826, 994, 1214
RsaNI	GTAC	5 cut(s)	276, 699, 825, 993, 1213
SacII	CCGCGG	1 cut(s)	1143
SaqAI	TTAA	6 cut(s)	213, 306, 530, 869, 981, 1118
Sau3AI	GATC	9 cut(s)	45, 115, 132, 173, 240, 255, 288, 740, 886
Sau96I	GGNCC	1 cut(s)	596
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	1 cut(s)	1116
ScrFI	CCNGG	3 cut(s)	148, 178, 222
SduI	GDGCHC	1 cut(s)	1063
SfaNI	GCATC	4 cut(s)	487, 549, 1169, 1235
SfcI	CTRYAG	1 cut(s)	558
Sfr303I	CCGCGG	1 cut(s)	1143
SgrBI	CCGCGG	1 cut(s)	1143
SmlI	CTYRAG	2 cut(s)	395, 1127
SmoI	CTYRAG	2 cut(s)	395, 1127
Sse9I	AATT	4 cut(s)	531, 639, 901, 1179
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	3 cut(s)	146, 176, 220
StyI	CCWWGG	1 cut(s)	1216
TaaI	ACNGT	8 cut(s)	129, 280, 490, 610, 829, 978, 1168, 1212
TaqI	TCGA	7 cut(s)	44, 103, 114, 258, 291, 472, 885
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	4 cut(s)	531, 639, 901, 1179
TatI	WGTACW	2 cut(s)	275, 698
TauI	GCSGC	4 cut(s)	170, 335, 347, 581
TfiI	GAWTC	4 cut(s)	586, 784, 1282, 1328
Tru1I	TTAA	6 cut(s)	213, 306, 530, 869, 981, 1118
Tru9I	TTAA	6 cut(s)	213, 306, 530, 869, 981, 1118
TscAI	CASTG	3 cut(s)	733, 1179, 1191
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	6 cut(s)	557, 560, 563, 575, 581, 749
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	7 cut(s)	747, 780, 894, 1106, 1125, 1140, 1237
TspGWI	ACGGA	5 cut(s)	89, 210, 309, 1053, 1320
TspRI	CASTG	3 cut(s)	733, 1179, 1191
Van91I	CCANNNNNTGG	1 cut(s)	153
XapI	RAATTY	2 cut(s)	639, 901
XceI	RCATGY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	554
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.