Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0019133

Physical Location & Seq

Genomic Coordinates Reverse (-)

12226521 .. 12235180

Gene Structure 8660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11980.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGTCGAGTATCCACCGCGTATGGGCGGGCGCCGGAGCTCCCAACCCACCAATTTGCATCCGGGAACCACCACGCTTGCAGCCCGAGATCTCACATCTCCGGCACAGATATTACGGGAGTATTCTCCGGCAAGGATTCCCGCTGCGGACGACGCCGTCTGAGCATTTGCGGCGGGTGACATGGACGTTGGAAGCGGTGGGGTCCAGAGGGGCATGGGAGCGATCGGAGGGCGGGGAAGGAGCGGAGAGCTCGAAGGCGGGGCGGTGCTCGTATGCGGTGGGGGAGTATCAGGCGTCCGTGGAGCAGGAAAGGAGTAGTAAGGATCGGAGGGTGGACATGGCGGTTGCAGCGGCGGTTACGGTGGTTCTGGGGGTCGGAAATCGGGTGCTTTATAAGCTGGCCCTGGTCCCCCTTAAACACTACCCATTCTTTCTCGCTCAGCTCGCCACTTTCGGATATGTAATTGTATATTTCTCAGTCTTGTATCTCCGGTATCGCGCTGGTATTGTTACTGATGAGATGCTATCCATGCCAAAAGCTCCATTTCTTGCTGTTGGCCTCTTGGAAGCTCTTGGTGCTGCTACTGGGATGGCAGCTGGAGCAATTCTTTGTGGAGCATCAATTCCAGTTTTGTCTCAGACGTTTCTTGTTTGGCAAATTCTCCTGTCAATTATTTTCCTTGGAAGGAGATACAGGGTCAATCAACTTTTAGGGTGCGTTCTTGTAGCCATTGGTGTAATCATAACTGTAGCAAGTGGATCTAGTGCTGGAAATTCGTTAAAAGAAGCTGGTGTATTTTGGAGTCTTCTCATGATAGTTTCATTTTTGTTCCAAGCAGCTGATACAGTGCTGAAGGAAGTAATCTTTCTGGATGCTCGTCAGCGGTTAAAGGGAAGATCGGTGGACCTATTTGTTGTGAATTCCTTTGATCGATCTGCTTTCCAAGCACTATTCATATGCCTCCTCTTGCCGTTTATGTCGAAATTATGGGGGATTCCATTTGGTCAACTGCCAAACTATCTTAAAGACGGTGCAGCTTGCTTTCTAAACATGGGTACCTTATCAACAGGATGTGATGGTGCTCCATTACTCCCGTTACTATTTGTTATTGTCAACATGGGCTTTAACATATCATTGCTGCATCTTCTCAAGATATCTTCTGCTGTGGTATCTTCCCTCGCATCGACATTTTCAGTGCCGATATCTGTGTATGTCTTCACGCTGCCACTACCATACCTAGGTGTTGCAGCCTCGTTGCCCACAGGCTTTGTCTCTGGGACCGTTGTTCTTGTAATTGGCTTGCTCATCTATGCCTGGACACCTTCAGTCTATCCAACTAATGCCTCCCCATCACCTCCTACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRT-like

Protein Analysis

456

Amino Acids

49.16

Weight (kDa)

9.44

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12170 AT5G12170 AT5G19380 AT5G19380
malus_domestica	MD03G1165200.v1.1
prunus_persica	Prupe.4G263900_v2.0.a1 Prupe.4G263900_v2.0.a1
pyrus_communis	pycom03g11980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AasI	GACNNNNNNGTC	1 cut(s)	154
Acc65I	GGTACC	1 cut(s)	1055
AccB1I	GGYRCC	2 cut(s)	29, 1055
AccBSI	CCGCTC	1 cut(s)	242
AccII	CGCG	2 cut(s)	18, 498
AclWI	GGATC	2 cut(s)	330, 766
AcsI	RAATTY	3 cut(s)	657, 772, 919
AcuI	CTGAAG	2 cut(s)	872, 1308
AcyI	GRCGYC	3 cut(s)	30, 152, 293
AfaI	GTAC	1 cut(s)	1057
AfiI	CCNNNNNNNGG	2 cut(s)	22, 1238
AjnI	CCWGG	2 cut(s)	402, 1313
Alw21I	GWGCWC	4 cut(s)	40, 251, 269, 1084
Alw26I	GTCTC	2 cut(s)	639, 1276
AlwI	GGATC	2 cut(s)	330, 766
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	399, 556
ApoI	RAATTY	3 cut(s)	657, 772, 919
Asp718I	GGTACC	1 cut(s)	1055
AspA2I	CCTAGG	1 cut(s)	1237
AspLEI	GCGC	2 cut(s)	32, 500
AspS9I	GGNCC	5 cut(s)	201, 400, 406, 904, 1278
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	187, 1344
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	4 cut(s)	201, 406, 904, 1278
AvrII	CCTAGG	1 cut(s)	1237
BaeI	ACNNNNGTAYC	2 cut(s)	1039, 1072
BanI	GGYRCC	2 cut(s)	29, 1055
BanII	GRGCYC	2 cut(s)	40, 251
BbsI	GAAGAC	2 cut(s)	797, 1207
Bbv12I	GWGCWC	4 cut(s)	40, 251, 269, 1084
BccI	CCATC	3 cut(s)	583, 1070, 1357
BceAI	ACGGC	2 cut(s)	139, 955
BciT130I	CCWGG	2 cut(s)	404, 1315
BciVI	GTATCC	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	639, 1276
BfaI	CTAG	2 cut(s)	762, 1238
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	20
BglII	AGATCT	1 cut(s)	87
BlnI	CCTAGG	1 cut(s)	1237
BlpI	GCTNAGC	1 cut(s)	438
Bme1390I	CCNGG	3 cut(s)	62, 404, 1315
Bme18I	GGWCC	4 cut(s)	201, 406, 904, 1278
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	5 cut(s)	201, 400, 406, 904, 1278
BmiI	GGNNCC	6 cut(s)	31, 66, 202, 408, 1057, 1279
BmrFI	CCNGG	3 cut(s)	62, 404, 1315
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	6 cut(s)	66, 510, 626, 862, 1150, 1190
BmuI	ACTGGG	1 cut(s)	594
BpiI	GAAGAC	2 cut(s)	797, 1207
BpmI	CTGGAG	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	1133
BpuMI	CCSGG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	931
BsaHI	GRCGYC	3 cut(s)	30, 152, 293
BsaJI	CCNNGG	4 cut(s)	297, 402, 679, 1237
BsaWI	WCCGGW	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 1238
Bse1I	ACTGG	2 cut(s)	589, 626
Bse3DI	GCAATG	1 cut(s)	1133
BseBI	CCWGG	2 cut(s)	404, 1315
BseCI	ATCGAT	1 cut(s)	931
BseDI	CCNNGG	4 cut(s)	297, 402, 679, 1237
BseGI	GGATG	4 cut(s)	57, 594, 877, 1076
BseLI	CCNNNNNNNGG	2 cut(s)	22, 1238
BseMI	GCAATG	1 cut(s)	1133
BseMII	CTCAG	4 cut(s)	150, 452, 489, 650
BseNI	ACTGG	2 cut(s)	589, 626
BseRI	GAGGAG	1 cut(s)	953
BsgI	GTGCAG	1 cut(s)	1053
Bsh1236I	CGCG	2 cut(s)	18, 498
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	401, 558
BshNI	GGYRCC	2 cut(s)	29, 1055
BshVI	ATCGAT	1 cut(s)	931
BsiEI	CGRYCG	1 cut(s)	224
BsiHKAI	GWGCWC	4 cut(s)	40, 251, 269, 1084
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	5 cut(s)	33, 61, 100, 127, 490
BslFI	GGGAC	2 cut(s)	392, 1291
BslI	CCNNNNNNNGG	2 cut(s)	22, 1238
BsmAI	GTCTC	2 cut(s)	639, 1276
BsmFI	GGGAC	2 cut(s)	392, 1291
BsnI	GGCC	2 cut(s)	401, 558
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	4 cut(s)	40, 251, 269, 1084
Bsp143I	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
Bsp1720I	GCTNAGC	1 cut(s)	438
BspANI	GGCC	2 cut(s)	401, 558
BspCNI	CTCAG	4 cut(s)	151, 451, 488, 649
BspDI	ATCGAT	1 cut(s)	931
BspFNI	CGCG	2 cut(s)	18, 498
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	6 cut(s)	31, 66, 202, 408, 1057, 1279
BspPI	GGATC	2 cut(s)	330, 766
BspT107I	GGYRCC	2 cut(s)	29, 1055
BsrBI	CCGCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	1133
BsrI	ACTGG	2 cut(s)	589, 626
BssECI	CCNNGG	4 cut(s)	297, 402, 679, 1237
BssMI	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
BssNI	GRCGYC	3 cut(s)	30, 152, 293
BssT1I	CCWWGG	2 cut(s)	679, 1237
Bst2UI	CCWGG	2 cut(s)	404, 1315
Bst4CI	ACNGT	6 cut(s)	361, 748, 847, 1031, 1282, 1363
BstACI	GRCGYC	3 cut(s)	30, 152, 293
BstC8I	GCNNGC	6 cut(s)	28, 77, 399, 444, 1039, 1301
BstDEI	CTNAG	4 cut(s)	159, 438, 475, 636
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	4 cut(s)	57, 594, 877, 1076
BstFNI	CGCG	2 cut(s)	18, 498
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	32, 500
BstKTI	GATC	7 cut(s)	90, 224, 325, 761, 899, 931, 935
BstMAI	GTCTC	2 cut(s)	639, 1276
BstMBI	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
BstMCI	CGRYCG	1 cut(s)	224
BstNI	CCWGG	2 cut(s)	404, 1315
BstSCI	CCNGG	3 cut(s)	60, 402, 1313
BstSFI	CTRYAG	1 cut(s)	747
BstUI	CGCG	2 cut(s)	18, 498
BstV2I	GAAGAC	2 cut(s)	797, 1207
BstX2I	RGATCY	2 cut(s)	87, 758
BstYI	RGATCY	2 cut(s)	87, 758
Bsu15I	ATCGAT	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	401, 558
BsuTUI	ATCGAT	1 cut(s)	931
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	57, 594, 877, 1076
BtsIMutI	CAGTG	2 cut(s)	852, 1200
Cac8I	GCNNGC	6 cut(s)	28, 77, 399, 444, 1039, 1301
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	2 cut(s)	32, 500
Cfr13I	GGNCC	5 cut(s)	201, 400, 406, 904, 1278
ClaI	ATCGAT	1 cut(s)	931
CseI	GACGC	2 cut(s)	160, 282
Csp6I	GTAC	1 cut(s)	1056
CspCI	CAANNNNNGTGG	4 cut(s)	57, 92, 1249, 1284
CviAII	CATG	7 cut(s)	180, 213, 337, 529, 811, 1051, 1117
CviQI	GTAC	1 cut(s)	1056
DdeI	CTNAG	4 cut(s)	159, 438, 475, 636
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	7 cut(s)	89, 223, 324, 760, 898, 930, 934
DpnII	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
Ecl136II	GAGCTC	2 cut(s)	38, 249
Eco130I	CCWWGG	2 cut(s)	679, 1237
Eco24I	GRGCYC	2 cut(s)	40, 251
Eco32I	GATATC	2 cut(s)	1155, 1203
Eco47I	GGWCC	4 cut(s)	201, 406, 904, 1278
Eco53kI	GAGCTC	2 cut(s)	38, 249
Eco57I	CTGAAG	2 cut(s)	872, 1308
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	2 cut(s)	38, 249
EcoRI	GAATTC	1 cut(s)	919
EcoRII	CCWGG	2 cut(s)	402, 1313
EcoRV	GATATC	2 cut(s)	1155, 1203
EcoT14I	CCWWGG	2 cut(s)	679, 1237
EcoT38I	GRGCYC	2 cut(s)	40, 251
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	679, 1237
FaeI	CATG	7 cut(s)	183, 216, 340, 532, 814, 1054, 1120
FaqI	GGGAC	2 cut(s)	392, 1291
FatI	CATG	7 cut(s)	179, 212, 336, 528, 810, 1050, 1116
FauI	CCCGC	5 cut(s)	19, 147, 165, 224, 250
FauNDI	CATATG	1 cut(s)	956
FokI	GGATG	4 cut(s)	44, 601, 884, 1083
FriOI	GRGCYC	2 cut(s)	40, 251
FspBI	CTAG	2 cut(s)	762, 1238
GlaI	GCGC	2 cut(s)	31, 499
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	401, 558
HapII	CCGG	5 cut(s)	33, 61, 100, 127, 490
HgaI	GACGC	2 cut(s)	160, 282
HhaI	GCGC	2 cut(s)	32, 500
Hin1I	GRCGYC	3 cut(s)	30, 152, 293
Hin1II	CATG	7 cut(s)	183, 216, 340, 532, 814, 1054, 1120
Hin6I	GCGC	2 cut(s)	30, 498
HinP1I	GCGC	2 cut(s)	30, 498
HincII	GTYRAC	2 cut(s)	1007, 1114
HindII	GTYRAC	2 cut(s)	1007, 1114
HinfI	GANTC	3 cut(s)	135, 802, 994
HpaII	CCGG	5 cut(s)	33, 61, 100, 127, 490
HphI	GGTGA	2 cut(s)	187, 1344
Hpy166II	GTNNAC	4 cut(s)	334, 904, 1007, 1114
Hpy188I	TCNGA	7 cut(s)	160, 226, 327, 377, 455, 639, 1367
Hpy188III	TCNNGA	4 cut(s)	204, 811, 869, 1150
Hpy8I	GTNNAC	4 cut(s)	334, 904, 1007, 1114
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	5 cut(s)	230, 247, 678, 847, 1332
HpyCH4III	ACNGT	6 cut(s)	361, 748, 847, 1031, 1282, 1363
HpyCH4IV	ACGT	2 cut(s)	185, 641
HpyCH4V	TGCA	6 cut(s)	57, 79, 347, 1034, 1141, 1247
HpyF3I	CTNAG	4 cut(s)	159, 438, 475, 636
HpySE526I	ACGT	2 cut(s)	185, 641
Hsp92I	GRCGYC	3 cut(s)	30, 152, 293
Hsp92II	CATG	7 cut(s)	183, 216, 340, 532, 814, 1054, 1120
HspAI	GCGC	2 cut(s)	30, 498
KasI	GGCGCC	1 cut(s)	29
KpnI	GGTACC	1 cut(s)	1059
Kzo9I	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
LmnI	GCTCC	9 cut(s)	35, 43, 217, 239, 301, 544, 599, 614, 1087
LweI	GCATC	6 cut(s)	66, 510, 626, 862, 1150, 1190
MaeI	CTAG	2 cut(s)	762, 1238
MaeII	ACGT	2 cut(s)	185, 641
MaeIII	GTNAC	4 cut(s)	175, 355, 508, 1095
MalI	GATC	7 cut(s)	89, 223, 324, 760, 898, 930, 934
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
MboII	GAAGA	6 cut(s)	797, 906, 1136, 1149, 1164, 1207
MflI	RGATCY	2 cut(s)	87, 758
MhlI	GDGCHC	4 cut(s)	40, 251, 269, 1084
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	811
MmeI	TCCRAC	3 cut(s)	168, 355, 1358
MseI	TTAA	5 cut(s)	414, 779, 887, 1023, 1125
MspA1I	CMGCKG	5 cut(s)	142, 350, 596, 839, 883
MspI	CCGG	5 cut(s)	33, 61, 100, 127, 490
MspR9I	CCNGG	3 cut(s)	62, 404, 1315
MvaI	CCWGG	2 cut(s)	404, 1315
MvnI	CGCG	2 cut(s)	18, 498
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	956
NdeII	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
NlaIII	CATG	7 cut(s)	183, 216, 340, 532, 814, 1054, 1120
NlaIV	GGNNCC	6 cut(s)	31, 66, 202, 408, 1057, 1279
NmuCI	GTSAC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	135, 994
PflFI	GACNNNGTC	1 cut(s)	154
PfoI	TCCNGGA	1 cut(s)	60
Ple19I	CGATCG	1 cut(s)	224
PleI	GAGTC	1 cut(s)	810
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	393
Psp124BI	GAGCTC	2 cut(s)	40, 251
Psp6I	CCWGG	2 cut(s)	402, 1313
PspGI	CCWGG	2 cut(s)	402, 1313
PspN4I	GGNNCC	6 cut(s)	31, 66, 202, 408, 1057, 1279
PspPI	GGNCC	5 cut(s)	201, 400, 406, 904, 1278
PsuI	RGATCY	2 cut(s)	87, 758
PsyI	GACNNNGTC	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	224
PvuII	CAGCTG	2 cut(s)	596, 839
RsaI	GTAC	1 cut(s)	1057
RsaNI	GTAC	1 cut(s)	1056
SacI	GAGCTC	2 cut(s)	40, 251
SaqAI	TTAA	5 cut(s)	414, 779, 887, 1023, 1125
Sau3AI	GATC	7 cut(s)	87, 221, 322, 758, 896, 928, 932
Sau96I	GGNCC	5 cut(s)	201, 400, 406, 904, 1278
SchI	GAGTC	1 cut(s)	811
ScrFI	CCNGG	3 cut(s)	62, 404, 1315
SduI	GDGCHC	4 cut(s)	40, 251, 269, 1084
SfaNI	GCATC	6 cut(s)	66, 510, 626, 862, 1150, 1190
SfcI	CTRYAG	1 cut(s)	747
SfoI	GGCGCC	1 cut(s)	31
SinI	GGWCC	4 cut(s)	201, 406, 904, 1278
SmlI	CTYRAG	1 cut(s)	1148
SmoI	CTYRAG	1 cut(s)	1148
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	762, 1238
SstI	GAGCTC	2 cut(s)	40, 251
StyD4I	CCNGG	3 cut(s)	60, 402, 1313
StyI	CCWWGG	2 cut(s)	679, 1237
TaaI	ACNGT	6 cut(s)	361, 748, 847, 1031, 1282, 1363
TaiI	ACGT	2 cut(s)	188, 644
TaqI	TCGA	5 cut(s)	5, 251, 931, 980, 1184
TauI	GCSGC	2 cut(s)	172, 353
TfiI	GAWTC	2 cut(s)	135, 994
Tru1I	TTAA	5 cut(s)	414, 779, 887, 1023, 1125
Tru9I	TTAA	5 cut(s)	414, 779, 887, 1023, 1125
TscAI	CASTG	2 cut(s)	852, 1200
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	810, 943
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	852, 1200
Tth111I	GACNNNGTC	1 cut(s)	154
VpaK11BI	GGWCC	4 cut(s)	201, 406, 904, 1278
XapI	RAATTY	3 cut(s)	657, 772, 919
XmaJI	CCTAGG	1 cut(s)	1237
XspI	CTAG	2 cut(s)	762, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.