Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010848

Physical Location & Seq

Genomic Coordinates Reverse (-)

4472986 .. 4474530

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTCCTCCTCCGGCGAAGATGCAAGAGATCCACCAATTCCTCTCCTCCGCACTCACCCAGCGTGGCCCTTCCGCTCTTCCATACGCCGAGAACACCAAGTCGCTAATCCGTCAACACCTCCTCAACCTAATCTCTTCCTACACTTCCCTCGACCCCAAAACGGCAACGTTTACACACAACGATGGCCGATCCGTGATTCTCCTCCAAGCCGACGGTACAATCCCGATGCCTTTCCAAGGCGTCAGCTACAACATCCCCGTCGTGATCTGGCTCCTCGAATCTTACCCTCAGTATCCTCCTTGCGTTTACGTGAATCCTACACGCGACATGATCATCAAACGACCTCACTCTAATGTCTCTCCTTCTGGACTCGTCTCTCTTCCTTACCTCCAAAATTGGATTTACCCTAGCTCCAATCTCGTAGATCTCGCCTCTCATCTCAGCGCCGCCTTCTCTCGTGATCCGCCGCTTTACTCTCAGCGCCGTCCTCCTCCGCAACCGTCTCCTTCGATCGGATCTGGATACTCGAGACCTCTTCCTCCTCGCCAGACGGATGATGCGGCAGAGGTATATAAGAAGAACGCTATCAACAGGATTGTTGAGATGGTTCATGGTGATATTGTATTGATGAGGAGTGCTAGAGAAGTGGAGACGGAAGGATTACTGAGTTTACAATCTGATCTTAAGAGAAGAGAAGAGGAGATCAACAATGGTTTTAAGGAGATGGTGATTGAGAAAGAGACCTTAGAGCAGCAACTACAGGTTATTGCTATGAATACTGATGTTCTTGGCTCTTGGATTAGGGAGAATCAAGGGAAAGCCAAGGATTTGCTAGTGGATTTGGATGTTGATGATTCATTTGAATGCATTGACTCATTGTCTAAGCAGATGTTAGAGTGTACTGCATTGGATTTAGCTATTGAAGATGTTGTTTATTCCATGGATAAATCGTTTAGAGATGGTTCGTTACCGTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGGGAGCAGTTCTTCCACCGAGCCACGGCTGAGAAAGTTAGGGAGATACAGATGGATGCTCAGGTTGCTTCCATTGCAGCTAGGTTGCATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0012505 GO:0016020 GO:0016043 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0032182 GO:0032502 GO:0032989 GO:0032991 GO:0036452 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051301 GO:0071840 GO:0090558 GO:0090626 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

UEV Vps23_core

Protein Analysis

368

Amino Acids

41.49

Weight (kDa)

5.56

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UEV	PF05743	38 - 158	3.2e-40	UEV domain
Vps23_core	PF09454	288 - 349	3.1e-23	Vps23 core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13860
fragaria_vesca	FvH4_4g12000
malus_domestica	MD00G1152100.v1.1 MD02G1270800.v1.1
prunus_persica	Prupe.2G048600_v2.0.a1
pyrus_communis	pycom02g23170 pycom07g03690
rosa_chinensis	RchiOBHm_Chr4g0409601
rosa_laevigata	RLG00000008550
rosa_multiflora	Rmu_co8343695.1_g000001 Rmu_sc0008771.1_g000003 Rmu_sc0013495.1_g000005 Rmu_sc0028358.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354080
rosa_rugosa	Rorug04G0095000
rosa_samantha	Rh4AG157000 Rh4BG156100 Rh4CG166500 Rh4DG150200
rosa_wichuraiana	Rw4G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	77
AccII	CGCG	1 cut(s)	327
AciI	CCGC	7 cut(s)	51, 75, 450, 467, 470, 497, 563
AclI	AACGTT	1 cut(s)	170
AclWI	GGATC	4 cut(s)	25, 186, 458, 526
AcoI	YGGCCR	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	220, 904
AfiI	CCNNNNNNNGG	4 cut(s)	163, 239, 515, 1036
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	2 cut(s)	866, 926
AhdI	GACNNNNNGTC	1 cut(s)	880
AluBI	AGCT	4 cut(s)	249, 414, 920, 1091
AluI	AGCT	4 cut(s)	249, 414, 920, 1091
Alw26I	GTCTC	6 cut(s)	364, 382, 510, 526, 647, 737
AlwI	GGATC	4 cut(s)	25, 186, 458, 526
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	2 cut(s)	67, 187
ApeKI	GCWGC	2 cut(s)	754, 1088
AspLEI	GCGC	2 cut(s)	449, 486
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	49, 629, 742
AvaI	CYCGRG	1 cut(s)	529
BauI	CACGAG	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	766, 1100
BccI	CCATC	5 cut(s)	179, 601, 721, 956, 1057
BceAI	ACGGC	3 cut(s)	180, 471, 1053
BciVI	GTATCC	2 cut(s)	306, 518
BclI	TGATCA	2 cut(s)	333, 979
BcoDI	GTCTC	6 cut(s)	364, 382, 510, 526, 647, 737
BfaI	CTAG	4 cut(s)	411, 642, 836, 1092
BfmI	CTRYAG	1 cut(s)	761
BfoI	RGCGCY	2 cut(s)	450, 487
BfrI	CTTAAG	1 cut(s)	686
BfuI	GTATCC	2 cut(s)	306, 518
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	5 cut(s)	450, 470, 564, 755, 1089
BlsI	GCNGC	5 cut(s)	451, 471, 565, 756, 1090
BmeRI	GACNNNNNGTC	1 cut(s)	880
BmeT110I	CYCGRG	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	6, 275
BmsI	GCATC	4 cut(s)	12, 219, 550, 1057
Bpu10I	CCTNAGC	1 cut(s)	1071
BsaAI	YACGTR	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	2 cut(s)	526, 737
BsaJI	CCNNGG	4 cut(s)	238, 825, 942, 1035
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 239, 515, 1036
Bse3DI	GCAATG	1 cut(s)	1083
BseDI	CCNNGG	4 cut(s)	238, 825, 942, 1035
BseGI	GGATG	4 cut(s)	255, 562, 853, 1072
BseLI	CCNNNNNNNGG	4 cut(s)	163, 239, 515, 1036
BseMI	GCAATG	1 cut(s)	1083
BseMII	CTCAG	6 cut(s)	305, 457, 494, 659, 1032, 1085
BseRI	GAGGAG	8 cut(s)	37, 113, 194, 266, 483, 534, 649, 716
BseXI	GCAGC	2 cut(s)	766, 1100
BseYI	CCCAGC	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	69, 189
BsiEI	CGRYCG	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	4 cut(s)	163, 239, 515, 1036
BsmAI	GTCTC	6 cut(s)	364, 382, 510, 526, 647, 737
BsmBI	CGTCTC	3 cut(s)	382, 510, 647
BsmI	GAATGC	2 cut(s)	872, 1099
BsnI	GGCC	2 cut(s)	69, 189
Bso31I	GGTCTC	2 cut(s)	526, 737
BsoBI	CYCGRG	1 cut(s)	529
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	7 cut(s)	51, 75, 450, 467, 470, 497, 563
BspANI	GGCC	2 cut(s)	69, 189
BspCNI	CTCAG	6 cut(s)	304, 456, 493, 660, 1033, 1084
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	6, 275
BspPI	GGATC	4 cut(s)	25, 186, 458, 526
BspQI	GCTCTTC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	686
BspTNI	GGTCTC	2 cut(s)	526, 737
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	1083
BssECI	CCNNGG	4 cut(s)	238, 825, 942, 1035
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	3 cut(s)	238, 825, 942
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	218, 504, 975
Bst6I	CTCTTC	6 cut(s)	84, 142, 387, 543, 688, 693
BstACI	GRCGYC	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	686
BstBAI	YACGTR	1 cut(s)	313
BstDEI	CTNAG	8 cut(s)	291, 443, 480, 668, 748, 885, 1041, 1071
BstDSI	CCRYGG	2 cut(s)	942, 1035
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	4 cut(s)	255, 562, 853, 1072
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	2 cut(s)	450, 487
BstHHI	GCGC	2 cut(s)	449, 486
BstMAI	GTCTC	6 cut(s)	364, 382, 510, 526, 647, 737
BstMCI	CGRYCG	1 cut(s)	516
BstMWI	GCNNNNNNNGC	2 cut(s)	1076, 1085
BstSFI	CTRYAG	1 cut(s)	761
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	766, 1100
BstX2I	RGATCY	3 cut(s)	30, 427, 518
BstYI	RGATCY	3 cut(s)	30, 427, 518
BsuI	GTATCC	2 cut(s)	306, 518
BsuRI	GGCC	2 cut(s)	69, 189
BtgI	CCRYGG	2 cut(s)	942, 1035
BtsCI	GGATG	4 cut(s)	255, 562, 853, 1072
CfoI	GCGC	2 cut(s)	449, 486
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	219, 903
CviAII	CATG	3 cut(s)	331, 614, 943
CviQI	GTAC	2 cut(s)	219, 903
DdeI	CTNAG	8 cut(s)	291, 443, 480, 668, 748, 885, 1041, 1071
DriI	GACNNNNNGTC	1 cut(s)	880
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	6 cut(s)	84, 142, 387, 543, 688, 693
Eam1105I	GACNNNNNGTC	1 cut(s)	880
EarI	CTCTTC	6 cut(s)	84, 142, 387, 543, 688, 693
EciI	GGCGGA	1 cut(s)	456
Eco130I	CCWWGG	3 cut(s)	238, 825, 942
Eco31I	GGTCTC	2 cut(s)	526, 737
Eco88I	CYCGRG	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoT14I	CCWWGG	3 cut(s)	238, 825, 942
EcoT22I	ATGCAT	1 cut(s)	872
ErhI	CCWWGG	3 cut(s)	238, 825, 942
Esp3I	CGTCTC	3 cut(s)	382, 510, 647
FaeI	CATG	3 cut(s)	334, 617, 946
FaiI	YATR	7 cut(s)	85, 332, 574, 576, 615, 776, 944
FatI	CATG	3 cut(s)	330, 613, 942
FbaI	TGATCA	2 cut(s)	333, 979
Fnu4HI	GCNGC	5 cut(s)	450, 470, 564, 755, 1089
FokI	GGATG	4 cut(s)	242, 569, 860, 1079
Fsp4HI	GCNGC	5 cut(s)	450, 470, 564, 755, 1089
FspBI	CTAG	4 cut(s)	411, 642, 836, 1092
GlaI	GCGC	2 cut(s)	448, 485
GluI	GCNGC	5 cut(s)	450, 470, 564, 755, 1089
GsaI	CCCAGC	1 cut(s)	64
HaeII	RGCGCY	2 cut(s)	450, 487
HaeIII	GGCC	2 cut(s)	69, 189
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	449, 486
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	334, 617, 946
Hin6I	GCGC	2 cut(s)	447, 484
HinP1I	GCGC	2 cut(s)	447, 484
HincII	GTYRAC	1 cut(s)	116
HindII	GTYRAC	1 cut(s)	116
HinfI	GANTC	7 cut(s)	199, 281, 316, 372, 811, 857, 875
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	3 cut(s)	49, 629, 742
Hpy166II	GTNNAC	5 cut(s)	116, 174, 310, 674, 903
Hpy188I	TCNGA	2 cut(s)	518, 682
Hpy188III	TCNNGA	7 cut(s)	226, 265, 369, 461, 522, 531, 1104
Hpy8I	GTNNAC	5 cut(s)	116, 174, 310, 674, 903
Hpy99I	CGWCG	2 cut(s)	218, 266
HpyAV	CCTTC	5 cut(s)	81, 375, 463, 519, 653
HpyCH4III	ACNGT	3 cut(s)	218, 504, 975
HpyCH4IV	ACGT	2 cut(s)	170, 312
HpyCH4V	TGCA	5 cut(s)	25, 870, 908, 1088, 1099
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1076, 1085
HpyF3I	CTNAG	8 cut(s)	291, 443, 480, 668, 748, 885, 1041, 1071
HpySE526I	ACGT	2 cut(s)	170, 312
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	334, 617, 946
HspAI	GCGC	2 cut(s)	447, 484
Ksp22I	TGATCA	2 cut(s)	333, 979
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	4 cut(s)	10, 279, 419, 1015
LpnPI	CCDG	9 cut(s)	27, 74, 256, 354, 507, 563, 580, 749, 1058
Lsp1109I	GCAGC	2 cut(s)	766, 1100
LweI	GCATC	4 cut(s)	12, 219, 550, 1057
MaeI	CTAG	4 cut(s)	411, 642, 836, 1092
MaeII	ACGT	2 cut(s)	170, 312
MaeIII	GTNAC	1 cut(s)	969
MbiI	CCGCTC	1 cut(s)	77
MflI	RGATCY	3 cut(s)	30, 427, 518
MluCI	AATT	2 cut(s)	38, 397
MlyI	GAGTC	2 cut(s)	366, 869
Mph1103I	ATGCAT	1 cut(s)	872
MseI	TTAA	2 cut(s)	687, 720
MslI	CAYNNNNRTG	3 cut(s)	183, 354, 865
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	1 cut(s)	14
Mva1269I	GAATGC	2 cut(s)	872, 1099
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	1076, 1085
NcoI	CCATGG	1 cut(s)	942
NlaIII	CATG	3 cut(s)	334, 617, 946
NlaIV	GGNNCC	2 cut(s)	6, 275
NmeAIII	GCCGAG	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	872
PaeR7I	CTCGAG	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	84
PctI	GAATGC	2 cut(s)	872, 1099
PfeI	GAWTC	5 cut(s)	199, 281, 316, 811, 857
PkrI	GCNGC	5 cut(s)	451, 471, 565, 756, 1090
Ple19I	CGATCG	1 cut(s)	516
PleI	GAGTC	2 cut(s)	366, 869
PpsI	GAGTC	2 cut(s)	366, 869
Ppu21I	YACGTR	1 cut(s)	313
Psp1406I	AACGTT	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	6, 275
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	3 cut(s)	30, 427, 518
PvuI	CGATCG	1 cut(s)	516
RsaI	GTAC	2 cut(s)	220, 904
RsaNI	GTAC	2 cut(s)	219, 903
RseI	CAYNNNNRTG	3 cut(s)	183, 354, 865
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	687, 720
SatI	GCNGC	5 cut(s)	450, 470, 564, 755, 1089
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	366, 869
SfaNI	GCATC	4 cut(s)	12, 219, 550, 1057
SfcI	CTRYAG	1 cut(s)	761
Sfr274I	CTCGAG	1 cut(s)	529
SlaI	CTCGAG	1 cut(s)	529
SmiMI	CAYNNNNRTG	3 cut(s)	183, 354, 865
SmlI	CTYRAG	2 cut(s)	529, 686
SmoI	CTYRAG	2 cut(s)	529, 686
Sse9I	AATT	2 cut(s)	38, 397
SsiI	CCGC	7 cut(s)	51, 75, 450, 467, 470, 497, 563
SspMI	CTAG	4 cut(s)	411, 642, 836, 1092
StyI	CCWWGG	3 cut(s)	238, 825, 942
TaaI	ACNGT	3 cut(s)	218, 504, 975
TaiI	ACGT	2 cut(s)	173, 315
TaqI	TCGA	5 cut(s)	153, 279, 512, 530, 1010
TasI	AATT	2 cut(s)	38, 397
TatI	WGTACW	1 cut(s)	902
TauI	GCSGC	3 cut(s)	452, 472, 566
TfiI	GAWTC	5 cut(s)	199, 281, 316, 811, 857
Tru1I	TTAA	2 cut(s)	687, 720
Tru9I	TTAA	2 cut(s)	687, 720
TseI	GCWGC	2 cut(s)	754, 1088
TspDTI	ATGAA	3 cut(s)	602, 791, 849
TspGWI	ACGGA	4 cut(s)	101, 184, 569, 671
Vha464I	CTTAAG	1 cut(s)	686
XagI	CCTNNNNNAGG	1 cut(s)	237
XhoI	CTCGAG	1 cut(s)	529
XspI	CTAG	4 cut(s)	411, 642, 836, 1092
Zsp2I	ATGCAT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.