Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019127

Physical Location & Seq

Genomic Coordinates Reverse (-)

4866954 .. 4867558

Gene Structure 605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15025.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAGCGGATTGGAGATAAAGAAATCGACGGTTCTGGGTCTCAAAATCAACATCCAGTGGGCTCCCCTCGAAACGAATTACAAGGGCAATCTCCAAAACCTGGAAACGGTAACACCAAAGATGCTTTGACAACCGATGATGCTTTGGCCTACTTAAAGGAAATAAAGGACGTGTTTCATGATCAAAAGTACAAATACCATCTGTTTCTCGAGATTATGAGCGACTTCAAGGCACAAAGGACCGATACTTCTGTCGTGATTGCACGAGTCAAAGACCTGTTAAAGGGACATAACCATTTAATTCTCGTATTTAACAAATTCTTGCCACATGGGTTTGAAATTACTCTTGACGATGAGGATGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

5.62

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	65 - 108	7e-15	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15025
malus_domestica	MD09G1041400.v1.1 MD15G1355900.v1.1
prunus_persica	Prupe.3G276200_v2.0.a1 Prupe.3G276200_v2.0.a1
pyrus_communis	pycom111g03240
rosa_laevigata	RLG00000021909
rosa_samantha	Rh2AG616300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	101
AciI	CCGC	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	101, 107, 283
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	229, 338
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	240
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	240
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	264
BccI	CCATC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	112, 130
BsaI	GGTCTC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 107, 283
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	52, 364
BseLI	CCNNNNNNNGG	3 cut(s)	101, 107, 283
BseNI	ACTGG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	3 cut(s)	101, 107, 283
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	32, 110
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	52, 364
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	52, 364
BtsIMutI	CAGTG	1 cut(s)	63
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	179, 329
CviJI	RGCY	2 cut(s)	63, 149
CviKI_1	RGCY	2 cut(s)	63, 149
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	2 cut(s)	182, 332
FaiI	YATR	4 cut(s)	180, 218, 291, 330
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	178, 328
FbaI	TGATCA	1 cut(s)	181
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	182, 332
HinfI	GANTC	1 cut(s)	267
Hpy188III	TCNNGA	5 cut(s)	179, 209, 211, 256, 347
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	32, 110
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	182, 332
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	21, 69, 87, 114, 290
LweI	GCATC	2 cut(s)	112, 130
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	4 cut(s)	77, 300, 317, 339
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	78, 349, 355
MseI	TTAA	5 cut(s)	155, 281, 299, 312, 367
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	182, 332
NlaIV	GGNNCC	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	209
PagI	TCATGA	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	101
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	5 cut(s)	155, 281, 299, 312, 367
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	3 cut(s)	103, 174, 279
SfaNI	GCATC	2 cut(s)	112, 130
Sfr274I	CTCGAG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	77, 300, 317, 339
SsiI	CCGC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	32, 110
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	27, 70, 210
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	4 cut(s)	77, 300, 317, 339
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	5 cut(s)	155, 281, 299, 312, 367
Tru9I	TTAA	5 cut(s)	155, 281, 299, 312, 367
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	17, 167
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.