Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0019127

Physical Location & Seq

Genomic Coordinates Forward (+)

25431523 .. 25433416

Gene Structure 1894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G276200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

AAACTCAAAGTTTACACGAGTCAGTTCCCTTGTCAGCGATCAAACCCTAACGAGTTCCCATTCTTCCCTGGAGATCAGCTCACTAATTTCAAAGGCCAATCCCAGACACCAGGAGGCGGAGGAGGAGCAGGTGGTGCTTCGCAGAGATTGATGTCGATCACTGATGCTCTGTTGTTTATCAAGCAACTCAAGGACGTGGGTGGTGACCAAAGAGAAGAATATTACATGTTTCTTGAAATCATGAAAGATTTTAAGGCTCAAAGGATCGACACGAAGGGTGTTTGTGCGAGAGTAAAGGCATTATTCAAAGGGCACAACCACTTAATTTTGGGATTTAATCGGTTCCTGCCACAGGGTTATCAGATAATCCCTGAGGAAGAAGATGCGACTCCGCCGCTGCAAAAACAGACAGTTGATATGAAGCTGCTATCGCGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

9.12

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15025
malus_domestica	MD09G1041400.v1.1 MD15G1355900.v1.1
prunus_persica	Prupe.3G276200_v2.0.a1 Prupe.3G276200_v2.0.a1
pyrus_communis	pycom111g03240
rosa_laevigata	RLG00000021909
rosa_samantha	Rh2AG616300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	119
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	117, 392, 395
AclWI	GGATC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	116, 352
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	91, 236, 307
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	67, 109
AluBI	AGCT	2 cut(s)	79, 424
AluI	AGCT	2 cut(s)	79, 424
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	397, 424
AsuHPI	GGTGA	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	384, 411
BciT130I	CCWGG	2 cut(s)	69, 111
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	395, 398, 425
BlsI	GCNGC	3 cut(s)	396, 399, 426
Bme1390I	CCNGG	2 cut(s)	69, 111
BmgBI	CACGTC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	69, 111
BmsI	GCATC	2 cut(s)	154, 373
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 352
Bse21I	CCTNAGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	69, 111
BseDI	CCNNGG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	116, 352
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	2 cut(s)	135, 138
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	384, 411
Bsh1236I	CGCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	116, 352
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	38, 73, 156, 264
BspACI	CCGC	3 cut(s)	117, 392, 395
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	4 cut(s)	38, 73, 156, 264
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	69, 111
Bst4CI	ACNGT	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	433
BstKTI	GATC	4 cut(s)	41, 76, 159, 267
BstMBI	GATC	4 cut(s)	38, 73, 156, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 430
BstNI	CCWGG	2 cut(s)	69, 111
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	67, 109
BstSLI	GKGCMC	1 cut(s)	315
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	384, 411
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	240
CviAII	CATG	2 cut(s)	226, 241
CviJI	RGCY	4 cut(s)	79, 96, 257, 424
CviKI_1	RGCY	4 cut(s)	79, 96, 257, 424
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	4 cut(s)	40, 75, 158, 266
DpnII	GATC	4 cut(s)	38, 73, 156, 264
EciI	GGCGGA	2 cut(s)	132, 381
Eco81I	CCTNAGG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	67, 109
FaeI	CATG	2 cut(s)	229, 244
FaiI	YATR	3 cut(s)	227, 242, 419
FatI	CATG	2 cut(s)	225, 240
Fnu4HI	GCNGC	3 cut(s)	395, 398, 425
Fsp4HI	GCNGC	3 cut(s)	395, 398, 425
GluI	GCNGC	3 cut(s)	395, 398, 425
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	229, 244
HinfI	GANTC	2 cut(s)	19, 388
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	233, 241
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 430
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	229, 244
Kzo9I	GATC	4 cut(s)	38, 73, 156, 264
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	9 cut(s)	54, 81, 96, 114, 116, 123, 338, 359, 384
Lsp1109I	GCAGC	2 cut(s)	384, 411
LweI	GCATC	2 cut(s)	154, 373
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	40, 75, 158, 266
MboI	GATC	4 cut(s)	38, 73, 156, 264
MboII	GAAGA	4 cut(s)	55, 227, 389, 392
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	85, 324
MlyI	GAGTC	2 cut(s)	28, 382
MnlI	CCTC	4 cut(s)	107, 113, 116, 367
MseI	TTAA	3 cut(s)	252, 323, 336
MspA1I	CMGCKG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	69, 111
MvaI	CCWGG	2 cut(s)	69, 111
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	134, 430
NdeII	GATC	4 cut(s)	38, 73, 156, 264
NlaIII	CATG	2 cut(s)	229, 244
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	229
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	1 cut(s)	119
PciI	ACATGT	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	396, 399, 426
PleI	GAGTC	2 cut(s)	27, 382
PpsI	GAGTC	2 cut(s)	27, 382
PscI	ACATGT	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	67, 109
PspEI	GGTNACC	1 cut(s)	203
PspGI	CCWGG	2 cut(s)	67, 109
PspN4I	GGNNCC	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	252, 323, 336
SatI	GCNGC	3 cut(s)	395, 398, 425
Sau3AI	GATC	4 cut(s)	38, 73, 156, 264
SchI	GAGTC	2 cut(s)	28, 382
ScrFI	CCNGG	2 cut(s)	69, 111
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	4 cut(s)	81, 133, 198, 426
SfaNI	GCATC	2 cut(s)	154, 373
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	85, 324
SsiI	CCGC	3 cut(s)	117, 392, 395
SspI	AATATT	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	67, 109
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	155, 267
TasI	AATT	2 cut(s)	85, 324
TauI	GCSGC	1 cut(s)	397
Tru1I	TTAA	3 cut(s)	252, 323, 336
Tru9I	TTAA	3 cut(s)	252, 323, 336
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	397, 424
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	257, 434
TspRI	CASTG	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.