Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016230

Physical Location & Seq

Genomic Coordinates Reverse (-)

4968089 .. 4970045

Gene Structure 1957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGATCAGGAGACAAACAAACGACCGAACCACCAATCGCCGTCGTCCGAAACTATGGCAAAACTGCAAAAATATCCGAACTTTGAAGCAAATTCATGCTTCTATGGTTGTTAATGGACTCATGTCTAATCTTTCTGTTGTTGGTGAGCTAATTTACTCAGCTTCTTTGTCGGTTCCTGGTGCGCTTAAGTATGCACACAAGTTGTTCGACGAAATTCCTAAACCAGACGTATCTATTTGTAACCATGTTTTGCGTGGCTCTGCTCAGAGCATGAAACCTGAAAAAACGGTTTCTTTGTATACTGAGATGGAGAAACGAGGTGTGTCGCCTGATAGGTATACGTTTACGTTTGTTCTCAAGGCGTGTTCGAAGCTTGAGTGGAGAAGTAATGGTTTTGCGTTTCATGGGAAAGTGGTGAGACATGGGTTTGTGTTGAATGAGTATGTTAAGAATGCTTTGATCCTTTTTCATGCTAATTGTGGAGATTTGGGAATTGCAAGTGAGCTTTTTGATGATTCTGCGAAAGCTCATAAGGTTGCTTGGTCTTCTATGACTTCTGGGTATGCTAAGAGAGGGAAGATTGATGAGGCGATGAGGCTTTTTGATGAAATGCCTTACAAAGATCAGGTAGCTTGGAATGTGATGATTACTGGTTGTTTGAAATGTAAGGAGATGGATTCAGCAAGAGAGCTCTTTGATAGGTTTACAGAGAAAGATGTTGTTACTTGGAATGCGATGATCTCTGGATATGTAAATTGCGGGTACCCTAAAGAAGCGCTAGGTATATTCAAGGAGATGAGGGATGCTGGTGAACACCCAGATGTTGTGACAATACTGAGTTTGTTATCTGCTTGTGCAGTCTTAGGAGATTTGGAAACTGGGAAGAGACTTCATATCTATATCTTGGAAACGGCTTCTGTTTCGAGTTCCATATATGTGGGCACTCCTATTTGGAATGCTCTAATTGACATGTATGCAAAGTGTGGAAGCATAGATAGAGCAATTGAAGTGTTCAGAGGAGTGAAAGATCGGGACTTGTCAACATGGAATACTTTGATAGTTGGTTTGGCTTTGCATCATGCAGAGGGATCAATTGAAATGTTCGAAGAAATGCAAAGATTGAAAGTCTGGCCAAATGAGGTGACTTTCATTGGAGTTATATTAGCTTGCAGCCATTCGGGGAGAGTTGATGAAGGGCGTAAGTATTTCAGCCTTATGAGGGATATGTATAATATTGAACCAAACATAAAGCATTATGGTTGTATGGTAGACATGTTGGGACGAGCAGGGCAATTAGAGGAAGCATTCATGTTTGTGGAGTCTATGAAGATTGAGCCTAACGCTATTGTATGGCGAACGCTATTAGGTGCATGTAAGATTTATGGGAATGTCGAGTTAGGGAAGTATGCAAATGAGAAACTGCTCAGTATGAGAAAGGACGAGAGTGGTGATTATGTGTTGCTATCCAACATATATGCTTCCACAGGTCAGTGGGACGGGGTGCAGAAAGTAAGGAAGATGTTTGATGATACAAGAGTGAAAAAACCGACTGGCGTTAGCTTGATCGAGGAAGATGACGACAAATTGATGATGAGATATTTACTTTCGTCAGAACCTGAGTCAAGATCAAGAGGTCGGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

548

Amino Acids

62.11

Weight (kDa)

8.43

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 124	1.3e-11	PPR repeat family
PPR	PF01535	179 - 205	2.3e-07	PPR repeat
PPR_2	PF13041	238 - 286	1.7e-13	PPR repeat family
PPR	PF01535	241 - 270	6.7e-10	PPR repeat
E_motif	PF20431	461 - 523	8e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15300
fragaria_vesca	FvH4_6g48130
malus_domestica	MD09G1053600.v1.1
prunus_persica	Prupe.3G264700_v2.0.a1
pyrus_communis	pycom111g04460
rosa_chinensis	RchiOBHm_Chr2g0167471
rosa_laevigata	RLG00000021722
rosa_multiflora	Rmu_sc0001206.1_g000036 Rmu_sc0043018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083470
rosa_rugosa	Rorug02G0530400
rosa_samantha	Rh2BG609100 Rh2CG580000 Rh2DG620400
rosa_wichuraiana	Rw2G049730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	762
AccI	GTMKAC	3 cut(s)	299, 338, 1269
AciI	CCGC	1 cut(s)	759
AclWI	GGATC	2 cut(s)	454, 1096
AcoI	YGGCCR	1 cut(s)	1130
AcsI	RAATTY	2 cut(s)	90, 213
AfaI	GTAC	1 cut(s)	764
AfeI	AGCGCT	1 cut(s)	777
AfiI	CCNNNNNNNGG	1 cut(s)	1219
AflII	CTTAAG	1 cut(s)	185
AflIII	ACRYGT	2 cut(s)	969, 1272
AgsI	TTSAA	8 cut(s)	85, 436, 661, 790, 1007, 1097, 1123, 1238
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	9 cut(s)	148, 161, 373, 505, 527, 632, 691, 1166, 1560
AluI	AGCT	9 cut(s)	148, 161, 373, 505, 527, 632, 691, 1166, 1560
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	3 cut(s)	4, 412, 880
AlwI	GGATC	2 cut(s)	454, 1096
AlwNI	CAGNNNCTG	1 cut(s)	1616
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	1 cut(s)	1130
ApeKI	GCWGC	1 cut(s)	1170
ApoI	RAATTY	2 cut(s)	90, 213
AseI	ATTAAT	1 cut(s)	1641
Asp718I	GGTACC	1 cut(s)	762
AspLEI	GCGC	2 cut(s)	184, 778
AsuHPI	GGTGA	5 cut(s)	155, 427, 821, 1153, 1460
AsuII	TTCGAA	2 cut(s)	368, 1104
BaeGI	GKGCMC	1 cut(s)	944
BaeI	ACNNNNGTAYC	2 cut(s)	1521, 1554
BalI	TGGCCA	1 cut(s)	1132
BanI	GGYRCC	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	1182
BccI	CCATC	2 cut(s)	301, 667
BceAI	ACGGC	2 cut(s)	24, 927
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	3 cut(s)	4, 412, 880
BfaI	CTAG	1 cut(s)	779
BfoI	RGCGCY	1 cut(s)	779
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	1171
BlsI	GCNGC	1 cut(s)	1172
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	174, 764
BmrFI	CCNGG	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	2 cut(s)	793, 1084
BmuI	ACTGGG	1 cut(s)	888
BoxI	GACNNNNGTC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	537
Bpu14I	TTCGAA	2 cut(s)	368, 1104
BpuEI	CTTGAG	2 cut(s)	341, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	1219
Bse1I	ACTGG	3 cut(s)	655, 883, 1555
BseBI	CCWGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	808
BseLI	CCNNNNNNNGG	1 cut(s)	1219
BseMII	CTCAG	6 cut(s)	171, 278, 294, 827, 1438, 1608
BseNI	ACTGG	3 cut(s)	655, 883, 1555
BseRI	GAGGAG	1 cut(s)	1032
BseSI	GKGCMC	1 cut(s)	944
BseXI	GCAGC	1 cut(s)	1182
BsgI	GTGCAG	2 cut(s)	876, 1523
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	1132
BshNI	GGYRCC	1 cut(s)	762
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	693
BslFI	GGGAC	3 cut(s)	1046, 1293, 1508
BslI	CCNNNNNNNGG	1 cut(s)	1219
BsmAI	GTCTC	3 cut(s)	4, 412, 880
BsmFI	GGGAC	3 cut(s)	1046, 1293, 1508
BsmI	GAATGC	4 cut(s)	457, 736, 961, 1304
BsnI	GGCC	1 cut(s)	1132
Bsp119I	TTCGAA	2 cut(s)	368, 1104
Bsp1286I	GDGCHC	2 cut(s)	693, 944
Bsp143I	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
BspACI	CCGC	1 cut(s)	759
BspANI	GGCC	1 cut(s)	1132
BspCNI	CTCAG	6 cut(s)	170, 277, 295, 828, 1437, 1609
BspLI	GGNNCC	2 cut(s)	174, 764
BspPI	GGATC	2 cut(s)	454, 1096
BspT104I	TTCGAA	2 cut(s)	368, 1104
BspT107I	GGYRCC	1 cut(s)	762
BspTI	CTTAAG	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	655, 883, 1555
BssMI	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
BssNAI	GTATAC	2 cut(s)	300, 339
Bst1107I	GTATAC	2 cut(s)	300, 339
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	878
BstAFI	CTTAAG	1 cut(s)	185
BstBI	TTCGAA	2 cut(s)	368, 1104
BstC8I	GCNNGC	1 cut(s)	1168
BstDEI	CTNAG	8 cut(s)	157, 264, 303, 567, 836, 862, 1424, 1617
BstF5I	GGATG	1 cut(s)	808
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	2 cut(s)	184, 778
BstKTI	GATC	8 cut(s)	6, 462, 625, 741, 1030, 1091, 1566, 1628
BstMAI	GTCTC	3 cut(s)	4, 412, 880
BstMBI	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
BstMCI	CGRYCG	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	3 cut(s)	973, 1276, 1374
BstPAI	GACNNNNGTC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	1182
BstV2I	GAAGAC	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	937
BstZ17I	GTATAC	2 cut(s)	300, 339
BsuRI	GGCC	1 cut(s)	1132
BtgZI	GCGATG	2 cut(s)	605, 749
BtsCI	GGATG	1 cut(s)	808
BtsIMutI	CAGTG	1 cut(s)	1496
Cac8I	GCNNGC	1 cut(s)	1168
CaiI	CAGNNNCTG	1 cut(s)	1616
CfoI	GCGC	2 cut(s)	184, 778
Csp6I	GTAC	1 cut(s)	763
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	8 cut(s)	157, 264, 303, 567, 836, 862, 1424, 1617
DpnI	GATC	8 cut(s)	5, 461, 624, 740, 1029, 1090, 1565, 1627
DpnII	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
EaeI	YGGCCR	1 cut(s)	1130
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Ecl136II	GAGCTC	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	693
Eco47III	AGCGCT	1 cut(s)	777
Eco53kI	GAGCTC	1 cut(s)	691
EcoICRI	GAGCTC	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	693
FaqI	GGGAC	3 cut(s)	1046, 1293, 1508
FauI	CCCGC	1 cut(s)	752
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	3 cut(s)	299, 338, 1269
Fnu4HI	GCNGC	1 cut(s)	1171
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	1 cut(s)	1171
FspBI	CTAG	1 cut(s)	779
GlaI	GCGC	2 cut(s)	183, 777
GluI	GCNGC	1 cut(s)	1171
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	1 cut(s)	1132
HhaI	GCGC	2 cut(s)	184, 778
Hin6I	GCGC	2 cut(s)	182, 776
HinP1I	GCGC	2 cut(s)	182, 776
HincII	GTYRAC	1 cut(s)	1041
HindII	GTYRAC	1 cut(s)	1041
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	5 cut(s)	117, 515, 677, 1319, 1619
HphI	GGTGA	5 cut(s)	155, 427, 821, 1153, 1460
Hpy166II	GTNNAC	7 cut(s)	300, 339, 345, 705, 812, 1041, 1270
Hpy188I	TCNGA	6 cut(s)	48, 77, 267, 1016, 1612, 1638
Hpy188III	TCNNGA	5 cut(s)	7, 744, 1031, 1623, 1629
Hpy8I	GTNNAC	7 cut(s)	300, 339, 345, 705, 812, 1041, 1270
Hpy99I	CGWCG	2 cut(s)	45, 212
HpyAV	CCTTC	1 cut(s)	1187
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	3 cut(s)	228, 341, 347
HpyF3I	CTNAG	8 cut(s)	157, 264, 303, 567, 836, 862, 1424, 1617
HpySE526I	ACGT	3 cut(s)	228, 341, 347
HspAI	GCGC	2 cut(s)	182, 776
KpnI	GGTACC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
Lsp1109I	GCAGC	1 cut(s)	1182
LweI	GCATC	2 cut(s)	793, 1084
MaeI	CTAG	1 cut(s)	779
MaeII	ACGT	3 cut(s)	228, 341, 347
MaeIII	GTNAC	4 cut(s)	239, 721, 826, 1141
MalI	GATC	8 cut(s)	5, 461, 624, 740, 1029, 1090, 1565, 1627
MboI	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
MboII	GAAGA	7 cut(s)	537, 589, 895, 1118, 1339, 1528, 1583
MfeI	CAATTG	2 cut(s)	1002, 1092
MhlI	GDGCHC	2 cut(s)	693, 944
MlsI	TGGCCA	1 cut(s)	1132
MluNI	TGGCCA	1 cut(s)	1132
MlyI	GAGTC	3 cut(s)	111, 1328, 1628
MmeI	TCCRAC	2 cut(s)	1491, 1616
Mox20I	TGGCCA	1 cut(s)	1132
MscI	TGGCCA	1 cut(s)	1132
MseI	TTAA	5 cut(s)	111, 186, 447, 1641, 1645
MslI	CAYNNNNRTG	3 cut(s)	819, 935, 1313
Msp20I	TGGCCA	1 cut(s)	1132
MspCI	CTTAAG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	2 cut(s)	1002, 1092
Mva1269I	GAATGC	4 cut(s)	457, 736, 961, 1304
MvaI	CCWGG	1 cut(s)	177
NdeII	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
NlaIV	GGNNCC	2 cut(s)	174, 764
NmuCI	GTSAC	2 cut(s)	826, 1141
NspI	RCATGY	3 cut(s)	973, 1276, 1374
NspV	TTCGAA	2 cut(s)	368, 1104
PacI	TTAATTAA	1 cut(s)	1645
PciI	ACATGT	2 cut(s)	969, 1272
PctI	GAATGC	4 cut(s)	457, 736, 961, 1304
PfeI	GAWTC	2 cut(s)	515, 677
PkrI	GCNGC	1 cut(s)	1172
PleI	GAGTC	3 cut(s)	111, 1327, 1627
PpsI	GAGTC	3 cut(s)	111, 1327, 1627
PscI	ACATGT	2 cut(s)	969, 1272
PshAI	GACNNNNGTC	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	1641
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	174, 764
PstNI	CAGNNNCTG	1 cut(s)	1616
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
RseI	CAYNNNNRTG	3 cut(s)	819, 935, 1313
SacI	GAGCTC	1 cut(s)	693
SaqAI	TTAA	5 cut(s)	111, 186, 447, 1641, 1645
SatI	GCNGC	1 cut(s)	1171
Sau3AI	GATC	8 cut(s)	3, 459, 622, 738, 1027, 1088, 1563, 1625
SchI	GAGTC	3 cut(s)	111, 1328, 1628
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	693, 944
SfaNI	GCATC	2 cut(s)	793, 1084
SfuI	TTCGAA	2 cut(s)	368, 1104
SmiMI	CAYNNNNRTG	3 cut(s)	819, 935, 1313
SmlI	CTYRAG	3 cut(s)	185, 356, 374
SmoI	CTYRAG	3 cut(s)	185, 356, 374
SsiI	CCGC	1 cut(s)	759
SspI	AATATT	1 cut(s)	1234
SspMI	CTAG	1 cut(s)	779
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	3 cut(s)	231, 344, 350
TaqI	TCGA	6 cut(s)	207, 368, 923, 1104, 1392, 1566
TaqII	GACCGA	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	515, 677
Tru1I	TTAA	5 cut(s)	111, 186, 447, 1641, 1645
Tru9I	TTAA	5 cut(s)	111, 186, 447, 1641, 1645
TscAI	CASTG	1 cut(s)	1496
TseFI	GTSAC	2 cut(s)	826, 1141
TseI	GCWGC	1 cut(s)	1170
Tsp45I	GTSAC	2 cut(s)	826, 1141
TspRI	CASTG	1 cut(s)	1496
Vha464I	CTTAAG	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	1641
XapI	RAATTY	2 cut(s)	90, 213
XceI	RCATGY	3 cut(s)	973, 1276, 1374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	3 cut(s)	299, 338, 1269
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.