Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016230

Physical Location & Seq

Genomic Coordinates Reverse (-)

6131524 .. 6133464

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTTCTGGGGAGATAAGCATCATACATGGAAATGCGCTTATAGATATGTATTCCAAGTGTGGCAGCATTGAAAGGGCACTTGAAGTGTTTCAGGGGATGAGGGAGAAGGATGTGTCTTCATGGAATTCAGTGATCGGAGGGCTGGCATTCCATGGCCATGCTGAAGAGTCGGTTAATCTGTTTGAAGAGATGCAGAGGTTGAAAGTCAGGCCTGATGGGATCACATTTGTTGGAGTCTTGGTAGCTTGCAGTCATGCTGGGAAGGTTGAAGACGGGCGCGGATACTTTAGTCTCATGAGGAATGAGTACAAAATCAAGCCTAACATAAAGCATTATGGGTGTATGGTGGATCTCTTAGGGCGTGCTGGGCTACTAGATGAAGCATTTGACTGCATTGGAAACATGGAGATGCAACCCAATGCCATAGTTTGGAGGACTCTTCTTGGGGCTTGTAAGGTTCATGGAAATGTTGAGTTGGGCAGACGTGCAAACGAGCGGCTACTTGATATTAGAGGAGATGAGAGTGGGGATTTTGTACTCCTATCAAACATATATGCTTCAAGAGGCGAGTGGCATGGGGCTGAGGAGGTGAGAAAGCTAATGGACGACAGTGGGGTGAAGAAAGAGCCTGGCTTTAGCATAGTTGAAGCAGATGACAGTGCTCTCAAGCATTTTTGTTTCTATTCCAAATCTAAGTCAAACAGAGGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

238

Amino Acids

26.38

Weight (kDa)

5.93

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	37 - 84	3.8e-09	PPR repeat family
PPR	PF01535	40 - 69	4e-06	PPR repeat
E_motif	PF20431	155 - 217	4.9e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15300
fragaria_vesca	FvH4_6g48130
malus_domestica	MD09G1053600.v1.1
prunus_persica	Prupe.3G264700_v2.0.a1
pyrus_communis	pycom111g04460
rosa_chinensis	RchiOBHm_Chr2g0167471
rosa_laevigata	RLG00000021722
rosa_multiflora	Rmu_sc0001206.1_g000036 Rmu_sc0043018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083470
rosa_rugosa	Rorug02G0530400
rosa_samantha	Rh2BG609100 Rh2CG580000 Rh2DG620400
rosa_wichuraiana	Rw2G049730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	499
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	282, 499
AclWI	GGATC	2 cut(s)	230, 360
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	311, 540
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	7 cut(s)	74, 86, 188, 205, 272, 564, 650
AjiI	CACGTC	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	2 cut(s)	248, 601
AluI	AGCT	2 cut(s)	248, 601
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	230, 360
AoxI	GGCC	2 cut(s)	157, 212
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	2 cut(s)	40, 282
AsuHPI	GGTGA	2 cut(s)	604, 631
BaeGI	GKGCMC	1 cut(s)	82
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BalI	TGGCCA	1 cut(s)	159
BbsI	GAAGAC	2 cut(s)	111, 279
Bbv12I	GWGCWC	1 cut(s)	667
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	633
BciVI	GTATCC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	2 cut(s)	67, 500
BlsI	GCNGC	2 cut(s)	68, 501
Bme1390I	CCNGG	1 cut(s)	633
BmgBI	CACGTC	1 cut(s)	488
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	30, 183, 402
BpiI	GAAGAC	2 cut(s)	111, 279
Bpu10I	CCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	653
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	105, 118, 716
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	576
BseRI	GAGGAG	2 cut(s)	531, 602
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	78
BseYI	CCCAGC	2 cut(s)	260, 368
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	159, 214
BsiHKAI	GWGCWC	1 cut(s)	667
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	159, 214
Bsp1286I	GDGCHC	2 cut(s)	82, 667
Bsp143I	GATC	3 cut(s)	135, 222, 352
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	2 cut(s)	282, 499
BspANI	GGCC	2 cut(s)	159, 214
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	297
BspPI	GGATC	2 cut(s)	230, 360
BsrBI	CCGCTC	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	135, 222, 352
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	2 cut(s)	614, 662
Bst6I	CTCTTC	3 cut(s)	162, 183, 447
BstC8I	GCNNGC	3 cut(s)	147, 250, 366
BstDEI	CTNAG	3 cut(s)	358, 585, 696
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	105, 118, 716
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	40, 282
BstKTI	GATC	3 cut(s)	138, 225, 355
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	135, 222, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	111, 279
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	159, 214
BtgI	CCRYGG	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	105, 118, 716
BtsIMutI	CAGTG	3 cut(s)	138, 619, 667
Cac8I	GCNNGC	3 cut(s)	147, 250, 366
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	2 cut(s)	40, 282
Csp6I	GTAC	2 cut(s)	310, 539
CviAII	CATG	9 cut(s)	29, 123, 155, 161, 257, 298, 406, 464, 578
CviQI	GTAC	2 cut(s)	310, 539
DdeI	CTNAG	3 cut(s)	358, 585, 696
DpnI	GATC	3 cut(s)	137, 224, 354
DpnII	GATC	3 cut(s)	135, 222, 352
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	162, 183, 447
EarI	CTCTTC	3 cut(s)	162, 183, 447
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	9 cut(s)	32, 126, 158, 164, 260, 301, 409, 467, 581
FatI	CATG	9 cut(s)	28, 122, 154, 160, 256, 297, 405, 463, 577
Fnu4HI	GCNGC	2 cut(s)	67, 500
FokI	GGATG	2 cut(s)	112, 125
Fsp4HI	GCNGC	2 cut(s)	67, 500
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	39, 281
GluI	GCNGC	2 cut(s)	67, 500
GsaI	CCCAGC	2 cut(s)	264, 372
HaeIII	GGCC	2 cut(s)	159, 214
HhaI	GCGC	2 cut(s)	40, 282
Hin1II	CATG	9 cut(s)	32, 126, 158, 164, 260, 301, 409, 467, 581
Hin6I	GCGC	2 cut(s)	38, 280
HinP1I	GCGC	2 cut(s)	38, 280
HinfI	GANTC	3 cut(s)	170, 237, 439
HphI	GGTGA	2 cut(s)	604, 631
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	298, 564
HpyAV	CCTTC	2 cut(s)	103, 259
HpyCH4III	ACNGT	2 cut(s)	614, 662
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	5 cut(s)	196, 252, 396, 415, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	3 cut(s)	358, 585, 696
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	9 cut(s)	32, 126, 158, 164, 260, 301, 409, 467, 581
HspAI	GCGC	2 cut(s)	38, 280
Kzo9I	GATC	3 cut(s)	135, 222, 352
LpnPI	CCDG	8 cut(s)	80, 131, 196, 228, 246, 354, 618, 645
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	3 cut(s)	30, 183, 402
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	487
MalI	GATC	3 cut(s)	137, 224, 354
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	3 cut(s)	135, 222, 352
MboII	GAAGA	6 cut(s)	111, 179, 200, 284, 434, 634
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	82, 667
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	3 cut(s)	179, 246, 433
MmeI	TCCRAC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	2 cut(s)	177, 715
MslI	CAYNNNNRTG	4 cut(s)	33, 159, 410, 468
Msp20I	TGGCCA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	633
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	3 cut(s)	135, 222, 352
NlaIII	CATG	9 cut(s)	32, 126, 158, 164, 260, 301, 409, 467, 581
PagI	TCATGA	1 cut(s)	297
PceI	AGGCCT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	68, 501
PleI	GAGTC	3 cut(s)	178, 245, 433
PpsI	GAGTC	3 cut(s)	178, 245, 433
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	2 cut(s)	260, 368
PspGI	CCWGG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	311, 540
RsaNI	GTAC	2 cut(s)	310, 539
RseI	CAYNNNNRTG	4 cut(s)	33, 159, 410, 468
SaqAI	TTAA	2 cut(s)	177, 715
SatI	GCNGC	2 cut(s)	67, 500
Sau3AI	GATC	3 cut(s)	135, 222, 352
SchI	GAGTC	3 cut(s)	179, 246, 433
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	2 cut(s)	82, 667
SetI	ASST	7 cut(s)	203, 250, 270, 462, 490, 594, 603
SfaNI	GCATC	3 cut(s)	30, 183, 402
SmiMI	CAYNNNNRTG	4 cut(s)	33, 159, 410, 468
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	1 cut(s)	127
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	282, 499
SspMI	CTAG	1 cut(s)	377
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	614, 662
TaiI	ACGT	1 cut(s)	490
TasI	AATT	1 cut(s)	127
TatI	WGTACW	2 cut(s)	309, 538
TauI	GCSGC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	177, 715
Tru9I	TTAA	2 cut(s)	177, 715
TscAI	CASTG	3 cut(s)	138, 619, 667
TseI	GCWGC	1 cut(s)	66
TspDTI	ATGAA	3 cut(s)	111, 396, 452
TspRI	CASTG	3 cut(s)	138, 619, 667
Van91I	CCANNNNNTGG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.