Prupe.3G264700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
24897782 .. 24899296
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G264700.1

Sequence Viewer

Length: 1515 bp
ATGGTCGTCAACGGCTTCAATTCAAACTATTCTGCTATCAGACAACTCATCTTCGCCGGTGCCATGGCTATTTCAGGCACCATAGATTATGCCCACCAACTGTTCGTTCATGTTGCTGAACCAGATACGTTCATGTGGAACACCATGATCAGAGGCTCAGCTCAGAGCCAGAACCCATTAAATGCGATTGTTCTGTATACCCGGATGGAAAATCGGCATGCAATGCCCGATAGCTTCACTTTCCCGTTTATACTCAAGGCCTGCACTAAGCTTTCTTGGGTTAAGATGGGTATGGGGATTCATGGGAAGGTTGTGAGGTTCGGATTTGAGTCGAATACGTTTGTTAGAAATACCCTTATTTATTTCCATGCTAATTGTGGGGATTTGAAGATTGCAAGCGAACTTTTTGATGCTTCGGCGAAGAGGGACGTGGTGCCATGGTCAGCTTTGACAGCAGGATATGCAAGAAGGGGGAAGTTGGATGAGGCCAGGCAACTTTTCGACGAAATGCCTGTTAAAGATTTGGTTTCTTGGAATGTGATGATTACAGGGTATGGAAAGCAAGGGGAGATGGAGAGTGCAAGGAAGCTCTTTGATAAGGTTCCGGAAAGAGATGTGGTGACTTGGAATGCAATGATTGCAGGTTATGTACTTTGCGGGTCCAATGAGCAGGCACTGCAGATGTTCGAGGAGATGAGGAGTCTTGGAGAAAAGCCTGATGAAGTGACCATGTTGAGTCTTTTGTCTGCTTGCACAGATATTGGAGATTTAGATGTTGGGCAAAAGATACATTCTGCCCTTCTGGAGATGGGTCGGGGAGATATGAGCATCATACTTGGAAATGCGCTTATAGATATGTACTCCAAGTGCGGGAGTATTGAAAGGGCAGTTGAAGTGTTCCAGAAGATGAGGGACAAGGATGTGTCTTCGTGGAATTCGGTGATAGGAGGGTTGGCATTTCATGGCCATGCTGAGGAATCAGTAAATCTGTTTGAAGAGATGCGAAGGTTGAAAATCAGGCCAAATGAGATCACGTTTGTTGGAGTCTTGGTTGCTTGCAGTCATGCTGGGAAGGTTGAAGAGGGGCGCAGATATTTCAATCTCATGAAGCATAAGTACAAAATTGAGCCAAACATAAAGCATTATGGGTGTATGGTGGATATGTTAGGGCGTGCTGGGCTACTAGATGAAGCATTTGAATTCATTGAAAAAATGGAGATTGAACCCAATGCTATTGTTTGGAGGACTCTGCTTGGGGCTTGTAGAGTTCATGGAAATGTCGAGCTGGGAAGGCGCGCAAATGAGCGGCTACTTGAAATGAGAAGGGATGAGAGTGGGGATTTCGTGCTGCTATCAAACATATATGCTTCGCGAGGTGAGTGGCGTGGGGTTGAAGAGGTGAGAAAGCTAATGGATGACAGTGGGGTGAAGAAGGAGCCTGGCTATAGCTTAATTGAAACAGATAACAGCGATCTCATGCATTTTTTGTTTGATTACAGGCCCAAGTCGATTTAA

Protein Analysis

505

Amino Acids

57.04

Weight (kDa)

6.06

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016230)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15300
fragaria_vesca FvH4_6g48130
malus_domestica MD09G1053600.v1.1
prunus_persica Prupe.3G264700_v2.0.a1
pyrus_communis pycom111g04460
rosa_chinensis RchiOBHm_Chr2g0167471
rosa_laevigata RLG00000021722
rosa_multiflora Rmu_sc0001206.1_g000036 Rmu_sc0043018.1_g000001
rosa_roxburghii Rroxscaffold_2G00083470
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2BG609100 Rh2CG580000 Rh2DG620400
rosa_wichuraiana Rw2G049730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 632
AccB1I GGYRCC 3 cut(s) 59, 77, 433
AccBSI CCGCTC 1 cut(s) 1306
AccI GTMKAC 1 cut(s) 197
AccII CGCG 2 cut(s) 1296, 1372
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 3 cut(s) 657, 870, 1306
AcoI YGGCCR 1 cut(s) 964
AcsI RAATTY 2 cut(s) 934, 1199
AfaI GTAC 3 cut(s) 651, 860, 1118
AfiI CCNNNNNNNGG 2 cut(s) 870, 973
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 2 cut(s) 488, 1438
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 8 cut(s) 161, 234, 271, 446, 589, 1285, 1408, 1449
AluI AGCT 8 cut(s) 161, 234, 271, 446, 589, 1285, 1408, 1449
AlwNI CAGNNNCTG 1 cut(s) 676
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 5 cut(s) 258, 486, 964, 1019, 1499
ApeKI GCWGC 1 cut(s) 1348
ApoI RAATTY 2 cut(s) 934, 1199
AspLEI GCGC 4 cut(s) 847, 1089, 1296, 1298
AspS9I GGNCC 2 cut(s) 660, 1500
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 5 cut(s) 631, 952, 1388, 1411, 1438
AvaII GGWCC 1 cut(s) 660
BalI TGGCCA 1 cut(s) 966
BanI GGYRCC 3 cut(s) 59, 77, 433
BarI GAAGNNNNNNTAC 2 cut(s) 1100, 1132
BbsI GAAGAC 1 cut(s) 918
BbvCI CCTCAGC 1 cut(s) 972
BbvI GCAGC 1 cut(s) 1335
BccI CCATC 4 cut(s) 199, 280, 565, 802
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 490, 1440
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 202
BfaI CTAG 1 cut(s) 1184
BfmI CTRYAG 2 cut(s) 677, 1444
BfuAI ACCTGC 1 cut(s) 632
BisI GCNGC 2 cut(s) 1307, 1349
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 2 cut(s) 1308, 1350
Bme1390I CCNGG 3 cut(s) 202, 490, 1440
Bme18I GGWCC 1 cut(s) 660
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 660, 1500
BmiI GGNNCC 6 cut(s) 61, 79, 435, 603, 661, 1437
BmrFI CCNGG 3 cut(s) 202, 490, 1440
BmsI GCATC 3 cut(s) 400, 837, 990
BpiI GAAGAC 1 cut(s) 918
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 1 cut(s) 972
Bpu1102I GCTNAGC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 63, 437
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 1035, 1065
Bsc4I CCNNNNNNNGG 2 cut(s) 870, 973
Bse118I RCCGGY 1 cut(s) 56
Bse3DI GCAATG 2 cut(s) 228, 639
BseAI TCCGGA 1 cut(s) 604
BseBI CCWGG 2 cut(s) 490, 1440
BseDI CCNNGG 2 cut(s) 63, 437
BseGI GGATG 5 cut(s) 210, 487, 925, 1333, 1420
BseLI CCNNNNNNNGG 2 cut(s) 870, 973
BseMI GCAATG 2 cut(s) 228, 639
BseMII CTCAG 3 cut(s) 171, 176, 963
BsePI GCGCGC 1 cut(s) 1294
BseRI GAGGAG 2 cut(s) 704, 712
BseXI GCAGC 1 cut(s) 1335
BseYI CCCAGC 3 cut(s) 1067, 1175, 1285
BsgI GTGCAG 1 cut(s) 247
Bsh1236I CGCG 2 cut(s) 1296, 1372
BshFI GGCC 5 cut(s) 260, 488, 966, 1021, 1501
BshNI GGYRCC 3 cut(s) 59, 77, 433
BsiSI CCGG 3 cut(s) 57, 202, 605
BslFI GGGAC 2 cut(s) 440, 926
BslI CCNNNNNNNGG 2 cut(s) 870, 973
BsmFI GGGAC 2 cut(s) 440, 926
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 5 cut(s) 260, 488, 966, 1021, 1501
Bsp13I TCCGGA 1 cut(s) 604
Bsp143I GATC 3 cut(s) 147, 1029, 1471
Bsp1720I GCTNAGC 1 cut(s) 157
Bsp19I CCATGG 2 cut(s) 63, 437
Bsp68I TCGCGA 1 cut(s) 1372
BspACI CCGC 3 cut(s) 657, 870, 1306
BspANI GGCC 5 cut(s) 260, 488, 966, 1021, 1501
BspCNI CTCAG 3 cut(s) 170, 175, 964
BspEI TCCGGA 1 cut(s) 604
BspFNI CGCG 2 cut(s) 1296, 1372
BspHI TCATGA 1 cut(s) 1104
BspLI GGNNCC 6 cut(s) 61, 79, 435, 603, 661, 1437
BspMAI CTGCAG 1 cut(s) 681
BspMI ACCTGC 1 cut(s) 632
BspT107I GGYRCC 3 cut(s) 59, 77, 433
BsrBI CCGCTC 1 cut(s) 1306
BsrDI GCAATG 2 cut(s) 228, 639
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 63, 437
BssHII GCGCGC 1 cut(s) 1294
BssMI GATC 3 cut(s) 147, 1029, 1471
BssNAI GTATAC 1 cut(s) 198
BssT1I CCWWGG 2 cut(s) 63, 437
Bst1107I GTATAC 1 cut(s) 198
Bst2UI CCWGG 2 cut(s) 490, 1440
Bst4CI ACNGT 2 cut(s) 102, 1421
Bst6I CTCTTC 4 cut(s) 416, 990, 1074, 1389
BstAPI GCANNNNNTGC 4 cut(s) 223, 461, 638, 676
BstC8I GCNNGC 8 cut(s) 219, 262, 397, 672, 751, 1057, 1173, 1296
BstDEI CTNAG 4 cut(s) 157, 162, 267, 972
BstDSI CCRYGG 2 cut(s) 63, 437
BstF5I GGATG 5 cut(s) 210, 487, 925, 1333, 1420
BstFNI CGCG 2 cut(s) 1296, 1372
BstHHI GCGC 4 cut(s) 847, 1089, 1296, 1298
BstKTI GATC 3 cut(s) 150, 1032, 1474
BstMBI GATC 3 cut(s) 147, 1029, 1471
BstMWI GCNNNNNNNGC 7 cut(s) 223, 452, 461, 638, 676, 1177, 1291
BstNI CCWGG 2 cut(s) 490, 1440
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 200, 488, 1438
BstSFI CTRYAG 2 cut(s) 677, 1444
BstUI CGCG 2 cut(s) 1296, 1372
BstV1I GCAGC 1 cut(s) 1335
BstV2I GAAGAC 1 cut(s) 918
BstZ17I GTATAC 1 cut(s) 198
BsuRI GGCC 5 cut(s) 260, 488, 966, 1021, 1501
BtgI CCRYGG 2 cut(s) 63, 437
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 5 cut(s) 210, 487, 925, 1333, 1420
BtsI GCAGTG 1 cut(s) 674
BtsIMutI CAGTG 2 cut(s) 674, 1426
BtuMI TCGCGA 1 cut(s) 1372
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 8 cut(s) 219, 262, 397, 672, 751, 1057, 1173, 1296
CaiI CAGNNNCTG 1 cut(s) 676
CciI TCATGA 1 cut(s) 1104
CfoI GCGC 4 cut(s) 847, 1089, 1296, 1298
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 660, 1500
Csp6I GTAC 3 cut(s) 650, 859, 1117
CviQI GTAC 3 cut(s) 650, 859, 1117
DdeI CTNAG 4 cut(s) 157, 162, 267, 972
DpnI GATC 3 cut(s) 149, 1031, 1473
DpnII GATC 3 cut(s) 147, 1029, 1471
EaeI YGGCCR 1 cut(s) 964
Eam1104I CTCTTC 4 cut(s) 416, 990, 1074, 1389
EarI CTCTTC 4 cut(s) 416, 990, 1074, 1389
Eco130I CCWWGG 2 cut(s) 63, 437
Eco147I AGGCCT 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 660
EcoRI GAATTC 2 cut(s) 934, 1199
EcoRII CCWGG 2 cut(s) 488, 1438
EcoT14I CCWWGG 2 cut(s) 63, 437
EcoT22I ATGCAT 1 cut(s) 1482
ErhI CCWWGG 2 cut(s) 63, 437
FaqI GGGAC 2 cut(s) 440, 926
FauI CCCGC 2 cut(s) 650, 863
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 1307, 1349
FokI GGATG 5 cut(s) 217, 494, 932, 1340, 1427
Fsp4HI GCNGC 2 cut(s) 1307, 1349
FspBI CTAG 1 cut(s) 1184
GlaI GCGC 4 cut(s) 846, 1088, 1295, 1297
GluI GCNGC 2 cut(s) 1307, 1349
GsaI CCCAGC 3 cut(s) 1071, 1179, 1289
GsuI CTGGAG 1 cut(s) 824
HaeIII GGCC 5 cut(s) 260, 488, 966, 1021, 1501
HapII CCGG 3 cut(s) 57, 202, 605
HhaI GCGC 4 cut(s) 847, 1089, 1296, 1298
Hin6I GCGC 4 cut(s) 845, 1087, 1294, 1296
HinP1I GCGC 4 cut(s) 845, 1087, 1294, 1296
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 7 cut(s) 298, 329, 700, 736, 977, 1044, 1246
HpaII CCGG 3 cut(s) 57, 202, 605
HphI GGTGA 5 cut(s) 631, 952, 1388, 1411, 1438
Hpy166II GTNNAC 2 cut(s) 10, 198
Hpy188I TCNGA 4 cut(s) 41, 152, 165, 323
Hpy188III TCNNGA 5 cut(s) 605, 803, 901, 1105, 1371
Hpy8I GTNNAC 2 cut(s) 10, 198
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 8 cut(s) 301, 462, 809, 999, 1066, 1284, 1317, 1426
HpyCH4III ACNGT 2 cut(s) 102, 1421
HpyCH4IV ACGT 4 cut(s) 128, 338, 429, 1034
HpyF10VI GCNNNNNNNGC 7 cut(s) 223, 452, 461, 638, 676, 1177, 1291
HpyF3I CTNAG 4 cut(s) 157, 162, 267, 972
HpySE526I ACGT 4 cut(s) 128, 338, 429, 1034
HspAI GCGC 4 cut(s) 845, 1087, 1294, 1296
Kpn2I TCCGGA 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 147, 1029, 1471
LmnI GCTCC 1 cut(s) 1435
Lsp1109I GCAGC 1 cut(s) 1335
LweI GCATC 3 cut(s) 400, 837, 990
MaeI CTAG 1 cut(s) 1184
MaeII ACGT 4 cut(s) 128, 338, 429, 1034
MaeIII GTNAC 2 cut(s) 619, 724
MalI GATC 3 cut(s) 149, 1031, 1473
MbiI CCGCTC 1 cut(s) 1306
MboI GATC 3 cut(s) 147, 1029, 1471
MboII GAAGA 9 cut(s) 43, 400, 433, 916, 918, 1007, 1091, 1406, 1441
MlsI TGGCCA 1 cut(s) 966
MluCI AATT 6 cut(s) 19, 373, 934, 1122, 1199, 1452
MluNI TGGCCA 1 cut(s) 966
MlyI GAGTC 5 cut(s) 338, 709, 745, 1053, 1240
MmeI TCCRAC 2 cut(s) 459, 1021
Mox20I TGGCCA 1 cut(s) 966
Mph1103I ATGCAT 1 cut(s) 1482
MroI TCCGGA 1 cut(s) 604
MscI TGGCCA 1 cut(s) 966
MseI TTAA 5 cut(s) 179, 282, 516, 1451, 1513
MslI CAYNNNNRTG 2 cut(s) 966, 1275
Msp20I TGGCCA 1 cut(s) 966
MspI CCGG 3 cut(s) 57, 202, 605
MspR9I CCNGG 3 cut(s) 202, 490, 1440
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 2 cut(s) 490, 1440
MvnI CGCG 2 cut(s) 1296, 1372
MwoI GCNNNNNNNGC 7 cut(s) 223, 452, 461, 638, 676, 1177, 1291
NciI CCSGG 1 cut(s) 202
NcoI CCATGG 2 cut(s) 63, 437
NdeII GATC 3 cut(s) 147, 1029, 1471
NlaIV GGNNCC 6 cut(s) 61, 79, 435, 603, 661, 1437
NmuCI GTSAC 2 cut(s) 619, 724
NruI TCGCGA 1 cut(s) 1372
NsiI ATGCAT 1 cut(s) 1482
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PagI TCATGA 1 cut(s) 1104
PauI GCGCGC 1 cut(s) 1294
PceI AGGCCT 1 cut(s) 260
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 298, 977
PkrI GCNGC 2 cut(s) 1308, 1350
PleI GAGTC 5 cut(s) 337, 708, 744, 1052, 1240
PpsI GAGTC 5 cut(s) 337, 708, 744, 1052, 1240
Psp6I CCWGG 2 cut(s) 488, 1438
PspFI CCCAGC 3 cut(s) 1067, 1175, 1285
PspGI CCWGG 2 cut(s) 488, 1438
PspN4I GGNNCC 6 cut(s) 61, 79, 435, 603, 661, 1437
PspPI GGNCC 2 cut(s) 660, 1500
PstI CTGCAG 1 cut(s) 681
PstNI CAGNNNCTG 1 cut(s) 676
PteI GCGCGC 1 cut(s) 1294
RruI TCGCGA 1 cut(s) 1372
RsaI GTAC 3 cut(s) 651, 860, 1118
RsaNI GTAC 3 cut(s) 650, 859, 1117
RseI CAYNNNNRTG 2 cut(s) 966, 1275
SaqAI TTAA 5 cut(s) 179, 282, 516, 1451, 1513
SatI GCNGC 2 cut(s) 1307, 1349
Sau3AI GATC 3 cut(s) 147, 1029, 1471
Sau96I GGNCC 2 cut(s) 660, 1500
SchI GAGTC 5 cut(s) 338, 709, 745, 1053, 1240
ScrFI CCNGG 3 cut(s) 202, 490, 1440
SfaNI GCATC 3 cut(s) 400, 837, 990
SfcI CTRYAG 2 cut(s) 677, 1444
SgrAI CRCCGGYG 1 cut(s) 56
SinI GGWCC 1 cut(s) 660
SmiMI CAYNNNNRTG 2 cut(s) 966, 1275
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SphI GCATGC 1 cut(s) 221
Sse9I AATT 6 cut(s) 19, 373, 934, 1122, 1199, 1452
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 3 cut(s) 657, 870, 1306
SspMI CTAG 1 cut(s) 1184
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 3 cut(s) 200, 488, 1438
StyI CCWWGG 2 cut(s) 63, 437
TaaI ACNGT 2 cut(s) 102, 1421
TaiI ACGT 4 cut(s) 131, 341, 432, 1037
TaqI TCGA 5 cut(s) 332, 501, 687, 1281, 1508
TasI AATT 6 cut(s) 19, 373, 934, 1122, 1199, 1452
TatI WGTACW 3 cut(s) 649, 858, 1116
TauI GCSGC 1 cut(s) 1309
TfiI GAWTC 2 cut(s) 298, 977
Tru1I TTAA 5 cut(s) 179, 282, 516, 1451, 1513
Tru9I TTAA 5 cut(s) 179, 282, 516, 1451, 1513
TscAI CASTG 2 cut(s) 681, 1426
TseFI GTSAC 2 cut(s) 619, 724
TseI GCWGC 1 cut(s) 1348
Tsp45I GTSAC 2 cut(s) 619, 724
TspDTI ATGAA 9 cut(s) 98, 121, 290, 735, 950, 1121, 1192, 1203, 1259
TspRI CASTG 2 cut(s) 681, 1426
VpaK11BI GGWCC 1 cut(s) 660
XapI RAATTY 2 cut(s) 934, 1199
XceI RCATGY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 197
XspI CTAG 1 cut(s) 1184
Zsp2I ATGCAT 1 cut(s) 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.