Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15300 |
| fragaria_vesca | FvH4_6g48130 |
| malus_domestica | MD09G1053600.v1.1 |
| prunus_persica | Prupe.3G264700_v2.0.a1 |
| pyrus_communis | pycom111g04460 |
| rosa_chinensis | RchiOBHm_Chr2g0167471 |
| rosa_laevigata | RLG00000021722 |
| rosa_multiflora | Rmu_sc0001206.1_g000036 Rmu_sc0043018.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00083470 |
| rosa_rugosa | Rorug02G0530400 |
| rosa_samantha | Rh2BG609100 Rh2CG580000 Rh2DG620400 |
| rosa_wichuraiana | Rw2G049730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 632 |
| AccB1I | GGYRCC | 3 cut(s) | 59, 77, 433 |
| AccBSI | CCGCTC | 1 cut(s) | 1306 |
| AccI | GTMKAC | 1 cut(s) | 197 |
| AccII | CGCG | 2 cut(s) | 1296, 1372 |
| AccIII | TCCGGA | 1 cut(s) | 604 |
| AciI | CCGC | 3 cut(s) | 657, 870, 1306 |
| AcoI | YGGCCR | 1 cut(s) | 964 |
| AcsI | RAATTY | 2 cut(s) | 934, 1199 |
| AfaI | GTAC | 3 cut(s) | 651, 860, 1118 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 870, 973 |
| AjiI | CACGTC | 1 cut(s) | 430 |
| AjnI | CCWGG | 2 cut(s) | 488, 1438 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 90, 122 |
| AluBI | AGCT | 8 cut(s) | 161, 234, 271, 446, 589, 1285, 1408, 1449 |
| AluI | AGCT | 8 cut(s) | 161, 234, 271, 446, 589, 1285, 1408, 1449 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 676 |
| Aor13HI | TCCGGA | 1 cut(s) | 604 |
| AoxI | GGCC | 5 cut(s) | 258, 486, 964, 1019, 1499 |
| ApeKI | GCWGC | 1 cut(s) | 1348 |
| ApoI | RAATTY | 2 cut(s) | 934, 1199 |
| AspLEI | GCGC | 4 cut(s) | 847, 1089, 1296, 1298 |
| AspS9I | GGNCC | 2 cut(s) | 660, 1500 |
| AsuC2I | CCSGG | 1 cut(s) | 202 |
| AsuHPI | GGTGA | 5 cut(s) | 631, 952, 1388, 1411, 1438 |
| AvaII | GGWCC | 1 cut(s) | 660 |
| BalI | TGGCCA | 1 cut(s) | 966 |
| BanI | GGYRCC | 3 cut(s) | 59, 77, 433 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1100, 1132 |
| BbsI | GAAGAC | 1 cut(s) | 918 |
| BbvCI | CCTCAGC | 1 cut(s) | 972 |
| BbvI | GCAGC | 1 cut(s) | 1335 |
| BccI | CCATC | 4 cut(s) | 199, 280, 565, 802 |
| BceAI | ACGGC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 2 cut(s) | 490, 1440 |
| BclI | TGATCA | 1 cut(s) | 147 |
| BcnI | CCSGG | 1 cut(s) | 202 |
| BfaI | CTAG | 1 cut(s) | 1184 |
| BfmI | CTRYAG | 2 cut(s) | 677, 1444 |
| BfuAI | ACCTGC | 1 cut(s) | 632 |
| BisI | GCNGC | 2 cut(s) | 1307, 1349 |
| BlpI | GCTNAGC | 1 cut(s) | 157 |
| BlsI | GCNGC | 2 cut(s) | 1308, 1350 |
| Bme1390I | CCNGG | 3 cut(s) | 202, 490, 1440 |
| Bme18I | GGWCC | 1 cut(s) | 660 |
| BmgBI | CACGTC | 1 cut(s) | 430 |
| BmgT120I | GGNCC | 2 cut(s) | 660, 1500 |
| BmiI | GGNNCC | 6 cut(s) | 61, 79, 435, 603, 661, 1437 |
| BmrFI | CCNGG | 3 cut(s) | 202, 490, 1440 |
| BmsI | GCATC | 3 cut(s) | 400, 837, 990 |
| BpiI | GAAGAC | 1 cut(s) | 918 |
| BpmI | CTGGAG | 1 cut(s) | 824 |
| Bpu10I | CCTNAGC | 1 cut(s) | 972 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 157 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| BpuMI | CCSGG | 1 cut(s) | 202 |
| BsaJI | CCNNGG | 2 cut(s) | 63, 437 |
| BsaWI | WCCGGW | 1 cut(s) | 604 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1035, 1065 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 870, 973 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| Bse3DI | GCAATG | 2 cut(s) | 228, 639 |
| BseAI | TCCGGA | 1 cut(s) | 604 |
| BseBI | CCWGG | 2 cut(s) | 490, 1440 |
| BseDI | CCNNGG | 2 cut(s) | 63, 437 |
| BseGI | GGATG | 5 cut(s) | 210, 487, 925, 1333, 1420 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 870, 973 |
| BseMI | GCAATG | 2 cut(s) | 228, 639 |
| BseMII | CTCAG | 3 cut(s) | 171, 176, 963 |
| BsePI | GCGCGC | 1 cut(s) | 1294 |
| BseRI | GAGGAG | 2 cut(s) | 704, 712 |
| BseXI | GCAGC | 1 cut(s) | 1335 |
| BseYI | CCCAGC | 3 cut(s) | 1067, 1175, 1285 |
| BsgI | GTGCAG | 1 cut(s) | 247 |
| Bsh1236I | CGCG | 2 cut(s) | 1296, 1372 |
| BshFI | GGCC | 5 cut(s) | 260, 488, 966, 1021, 1501 |
| BshNI | GGYRCC | 3 cut(s) | 59, 77, 433 |
| BsiSI | CCGG | 3 cut(s) | 57, 202, 605 |
| BslFI | GGGAC | 2 cut(s) | 440, 926 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 870, 973 |
| BsmFI | GGGAC | 2 cut(s) | 440, 926 |
| BsmI | GAATGC | 1 cut(s) | 634 |
| BsnI | GGCC | 5 cut(s) | 260, 488, 966, 1021, 1501 |
| Bsp13I | TCCGGA | 1 cut(s) | 604 |
| Bsp143I | GATC | 3 cut(s) | 147, 1029, 1471 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 157 |
| Bsp19I | CCATGG | 2 cut(s) | 63, 437 |
| Bsp68I | TCGCGA | 1 cut(s) | 1372 |
| BspACI | CCGC | 3 cut(s) | 657, 870, 1306 |
| BspANI | GGCC | 5 cut(s) | 260, 488, 966, 1021, 1501 |
| BspCNI | CTCAG | 3 cut(s) | 170, 175, 964 |
| BspEI | TCCGGA | 1 cut(s) | 604 |
| BspFNI | CGCG | 2 cut(s) | 1296, 1372 |
| BspHI | TCATGA | 1 cut(s) | 1104 |
| BspLI | GGNNCC | 6 cut(s) | 61, 79, 435, 603, 661, 1437 |
| BspMAI | CTGCAG | 1 cut(s) | 681 |
| BspMI | ACCTGC | 1 cut(s) | 632 |
| BspT107I | GGYRCC | 3 cut(s) | 59, 77, 433 |
| BsrBI | CCGCTC | 1 cut(s) | 1306 |
| BsrDI | GCAATG | 2 cut(s) | 228, 639 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssECI | CCNNGG | 2 cut(s) | 63, 437 |
| BssHII | GCGCGC | 1 cut(s) | 1294 |
| BssMI | GATC | 3 cut(s) | 147, 1029, 1471 |
| BssNAI | GTATAC | 1 cut(s) | 198 |
| BssT1I | CCWWGG | 2 cut(s) | 63, 437 |
| Bst1107I | GTATAC | 1 cut(s) | 198 |
| Bst2UI | CCWGG | 2 cut(s) | 490, 1440 |
| Bst4CI | ACNGT | 2 cut(s) | 102, 1421 |
| Bst6I | CTCTTC | 4 cut(s) | 416, 990, 1074, 1389 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 223, 461, 638, 676 |
| BstC8I | GCNNGC | 8 cut(s) | 219, 262, 397, 672, 751, 1057, 1173, 1296 |
| BstDEI | CTNAG | 4 cut(s) | 157, 162, 267, 972 |
| BstDSI | CCRYGG | 2 cut(s) | 63, 437 |
| BstF5I | GGATG | 5 cut(s) | 210, 487, 925, 1333, 1420 |
| BstFNI | CGCG | 2 cut(s) | 1296, 1372 |
| BstHHI | GCGC | 4 cut(s) | 847, 1089, 1296, 1298 |
| BstKTI | GATC | 3 cut(s) | 150, 1032, 1474 |
| BstMBI | GATC | 3 cut(s) | 147, 1029, 1471 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 223, 452, 461, 638, 676, 1177, 1291 |
| BstNI | CCWGG | 2 cut(s) | 490, 1440 |
| BstNSI | RCATGY | 1 cut(s) | 221 |
| BstSCI | CCNGG | 3 cut(s) | 200, 488, 1438 |
| BstSFI | CTRYAG | 2 cut(s) | 677, 1444 |
| BstUI | CGCG | 2 cut(s) | 1296, 1372 |
| BstV1I | GCAGC | 1 cut(s) | 1335 |
| BstV2I | GAAGAC | 1 cut(s) | 918 |
| BstZ17I | GTATAC | 1 cut(s) | 198 |
| BsuRI | GGCC | 5 cut(s) | 260, 488, 966, 1021, 1501 |
| BtgI | CCRYGG | 2 cut(s) | 63, 437 |
| BtrI | CACGTC | 1 cut(s) | 430 |
| BtsCI | GGATG | 5 cut(s) | 210, 487, 925, 1333, 1420 |
| BtsI | GCAGTG | 1 cut(s) | 674 |
| BtsIMutI | CAGTG | 2 cut(s) | 674, 1426 |
| BtuMI | TCGCGA | 1 cut(s) | 1372 |
| BveI | ACCTGC | 1 cut(s) | 632 |
| Cac8I | GCNNGC | 8 cut(s) | 219, 262, 397, 672, 751, 1057, 1173, 1296 |
| CaiI | CAGNNNCTG | 1 cut(s) | 676 |
| CciI | TCATGA | 1 cut(s) | 1104 |
| CfoI | GCGC | 4 cut(s) | 847, 1089, 1296, 1298 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 2 cut(s) | 660, 1500 |
| Csp6I | GTAC | 3 cut(s) | 650, 859, 1117 |
| CviQI | GTAC | 3 cut(s) | 650, 859, 1117 |
| DdeI | CTNAG | 4 cut(s) | 157, 162, 267, 972 |
| DpnI | GATC | 3 cut(s) | 149, 1031, 1473 |
| DpnII | GATC | 3 cut(s) | 147, 1029, 1471 |
| EaeI | YGGCCR | 1 cut(s) | 964 |
| Eam1104I | CTCTTC | 4 cut(s) | 416, 990, 1074, 1389 |
| EarI | CTCTTC | 4 cut(s) | 416, 990, 1074, 1389 |
| Eco130I | CCWWGG | 2 cut(s) | 63, 437 |
| Eco147I | AGGCCT | 1 cut(s) | 260 |
| Eco47I | GGWCC | 1 cut(s) | 660 |
| EcoRI | GAATTC | 2 cut(s) | 934, 1199 |
| EcoRII | CCWGG | 2 cut(s) | 488, 1438 |
| EcoT14I | CCWWGG | 2 cut(s) | 63, 437 |
| EcoT22I | ATGCAT | 1 cut(s) | 1482 |
| ErhI | CCWWGG | 2 cut(s) | 63, 437 |
| FaqI | GGGAC | 2 cut(s) | 440, 926 |
| FauI | CCCGC | 2 cut(s) | 650, 863 |
| FbaI | TGATCA | 1 cut(s) | 147 |
| FblI | GTMKAC | 1 cut(s) | 197 |
| Fnu4HI | GCNGC | 2 cut(s) | 1307, 1349 |
| FokI | GGATG | 5 cut(s) | 217, 494, 932, 1340, 1427 |
| Fsp4HI | GCNGC | 2 cut(s) | 1307, 1349 |
| FspBI | CTAG | 1 cut(s) | 1184 |
| GlaI | GCGC | 4 cut(s) | 846, 1088, 1295, 1297 |
| GluI | GCNGC | 2 cut(s) | 1307, 1349 |
| GsaI | CCCAGC | 3 cut(s) | 1071, 1179, 1289 |
| GsuI | CTGGAG | 1 cut(s) | 824 |
| HaeIII | GGCC | 5 cut(s) | 260, 488, 966, 1021, 1501 |
| HapII | CCGG | 3 cut(s) | 57, 202, 605 |
| HhaI | GCGC | 4 cut(s) | 847, 1089, 1296, 1298 |
| Hin6I | GCGC | 4 cut(s) | 845, 1087, 1294, 1296 |
| HinP1I | GCGC | 4 cut(s) | 845, 1087, 1294, 1296 |
| HincII | GTYRAC | 1 cut(s) | 10 |
| HindII | GTYRAC | 1 cut(s) | 10 |
| HindIII | AAGCTT | 1 cut(s) | 269 |
| HinfI | GANTC | 7 cut(s) | 298, 329, 700, 736, 977, 1044, 1246 |
| HpaII | CCGG | 3 cut(s) | 57, 202, 605 |
| HphI | GGTGA | 5 cut(s) | 631, 952, 1388, 1411, 1438 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 198 |
| Hpy188I | TCNGA | 4 cut(s) | 41, 152, 165, 323 |
| Hpy188III | TCNNGA | 5 cut(s) | 605, 803, 901, 1105, 1371 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 198 |
| Hpy99I | CGWCG | 1 cut(s) | 506 |
| HpyAV | CCTTC | 8 cut(s) | 301, 462, 809, 999, 1066, 1284, 1317, 1426 |
| HpyCH4III | ACNGT | 2 cut(s) | 102, 1421 |
| HpyCH4IV | ACGT | 4 cut(s) | 128, 338, 429, 1034 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 223, 452, 461, 638, 676, 1177, 1291 |
| HpyF3I | CTNAG | 4 cut(s) | 157, 162, 267, 972 |
| HpySE526I | ACGT | 4 cut(s) | 128, 338, 429, 1034 |
| HspAI | GCGC | 4 cut(s) | 845, 1087, 1294, 1296 |
| Kpn2I | TCCGGA | 1 cut(s) | 604 |
| Ksp22I | TGATCA | 1 cut(s) | 147 |
| Kzo9I | GATC | 3 cut(s) | 147, 1029, 1471 |
| LmnI | GCTCC | 1 cut(s) | 1435 |
| Lsp1109I | GCAGC | 1 cut(s) | 1335 |
| LweI | GCATC | 3 cut(s) | 400, 837, 990 |
| MaeI | CTAG | 1 cut(s) | 1184 |
| MaeII | ACGT | 4 cut(s) | 128, 338, 429, 1034 |
| MaeIII | GTNAC | 2 cut(s) | 619, 724 |
| MalI | GATC | 3 cut(s) | 149, 1031, 1473 |
| MbiI | CCGCTC | 1 cut(s) | 1306 |
| MboI | GATC | 3 cut(s) | 147, 1029, 1471 |
| MboII | GAAGA | 9 cut(s) | 43, 400, 433, 916, 918, 1007, 1091, 1406, 1441 |
| MlsI | TGGCCA | 1 cut(s) | 966 |
| MluCI | AATT | 6 cut(s) | 19, 373, 934, 1122, 1199, 1452 |
| MluNI | TGGCCA | 1 cut(s) | 966 |
| MlyI | GAGTC | 5 cut(s) | 338, 709, 745, 1053, 1240 |
| MmeI | TCCRAC | 2 cut(s) | 459, 1021 |
| Mox20I | TGGCCA | 1 cut(s) | 966 |
| Mph1103I | ATGCAT | 1 cut(s) | 1482 |
| MroI | TCCGGA | 1 cut(s) | 604 |
| MscI | TGGCCA | 1 cut(s) | 966 |
| MseI | TTAA | 5 cut(s) | 179, 282, 516, 1451, 1513 |
| MslI | CAYNNNNRTG | 2 cut(s) | 966, 1275 |
| Msp20I | TGGCCA | 1 cut(s) | 966 |
| MspI | CCGG | 3 cut(s) | 57, 202, 605 |
| MspR9I | CCNGG | 3 cut(s) | 202, 490, 1440 |
| Mva1269I | GAATGC | 1 cut(s) | 634 |
| MvaI | CCWGG | 2 cut(s) | 490, 1440 |
| MvnI | CGCG | 2 cut(s) | 1296, 1372 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 223, 452, 461, 638, 676, 1177, 1291 |
| NciI | CCSGG | 1 cut(s) | 202 |
| NcoI | CCATGG | 2 cut(s) | 63, 437 |
| NdeII | GATC | 3 cut(s) | 147, 1029, 1471 |
| NlaIV | GGNNCC | 6 cut(s) | 61, 79, 435, 603, 661, 1437 |
| NmuCI | GTSAC | 2 cut(s) | 619, 724 |
| NruI | TCGCGA | 1 cut(s) | 1372 |
| NsiI | ATGCAT | 1 cut(s) | 1482 |
| NspI | RCATGY | 1 cut(s) | 221 |
| PaeI | GCATGC | 1 cut(s) | 221 |
| PagI | TCATGA | 1 cut(s) | 1104 |
| PauI | GCGCGC | 1 cut(s) | 1294 |
| PceI | AGGCCT | 1 cut(s) | 260 |
| PctI | GAATGC | 1 cut(s) | 634 |
| PfeI | GAWTC | 2 cut(s) | 298, 977 |
| PkrI | GCNGC | 2 cut(s) | 1308, 1350 |
| PleI | GAGTC | 5 cut(s) | 337, 708, 744, 1052, 1240 |
| PpsI | GAGTC | 5 cut(s) | 337, 708, 744, 1052, 1240 |
| Psp6I | CCWGG | 2 cut(s) | 488, 1438 |
| PspFI | CCCAGC | 3 cut(s) | 1067, 1175, 1285 |
| PspGI | CCWGG | 2 cut(s) | 488, 1438 |
| PspN4I | GGNNCC | 6 cut(s) | 61, 79, 435, 603, 661, 1437 |
| PspPI | GGNCC | 2 cut(s) | 660, 1500 |
| PstI | CTGCAG | 1 cut(s) | 681 |
| PstNI | CAGNNNCTG | 1 cut(s) | 676 |
| PteI | GCGCGC | 1 cut(s) | 1294 |
| RruI | TCGCGA | 1 cut(s) | 1372 |
| RsaI | GTAC | 3 cut(s) | 651, 860, 1118 |
| RsaNI | GTAC | 3 cut(s) | 650, 859, 1117 |
| RseI | CAYNNNNRTG | 2 cut(s) | 966, 1275 |
| SaqAI | TTAA | 5 cut(s) | 179, 282, 516, 1451, 1513 |
| SatI | GCNGC | 2 cut(s) | 1307, 1349 |
| Sau3AI | GATC | 3 cut(s) | 147, 1029, 1471 |
| Sau96I | GGNCC | 2 cut(s) | 660, 1500 |
| SchI | GAGTC | 5 cut(s) | 338, 709, 745, 1053, 1240 |
| ScrFI | CCNGG | 3 cut(s) | 202, 490, 1440 |
| SfaNI | GCATC | 3 cut(s) | 400, 837, 990 |
| SfcI | CTRYAG | 2 cut(s) | 677, 1444 |
| SgrAI | CRCCGGYG | 1 cut(s) | 56 |
| SinI | GGWCC | 1 cut(s) | 660 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 966, 1275 |
| SmlI | CTYRAG | 1 cut(s) | 254 |
| SmoI | CTYRAG | 1 cut(s) | 254 |
| SphI | GCATGC | 1 cut(s) | 221 |
| Sse9I | AATT | 6 cut(s) | 19, 373, 934, 1122, 1199, 1452 |
| SseBI | AGGCCT | 1 cut(s) | 260 |
| SsiI | CCGC | 3 cut(s) | 657, 870, 1306 |
| SspMI | CTAG | 1 cut(s) | 1184 |
| StuI | AGGCCT | 1 cut(s) | 260 |
| StyD4I | CCNGG | 3 cut(s) | 200, 488, 1438 |
| StyI | CCWWGG | 2 cut(s) | 63, 437 |
| TaaI | ACNGT | 2 cut(s) | 102, 1421 |
| TaiI | ACGT | 4 cut(s) | 131, 341, 432, 1037 |
| TaqI | TCGA | 5 cut(s) | 332, 501, 687, 1281, 1508 |
| TasI | AATT | 6 cut(s) | 19, 373, 934, 1122, 1199, 1452 |
| TatI | WGTACW | 3 cut(s) | 649, 858, 1116 |
| TauI | GCSGC | 1 cut(s) | 1309 |
| TfiI | GAWTC | 2 cut(s) | 298, 977 |
| Tru1I | TTAA | 5 cut(s) | 179, 282, 516, 1451, 1513 |
| Tru9I | TTAA | 5 cut(s) | 179, 282, 516, 1451, 1513 |
| TscAI | CASTG | 2 cut(s) | 681, 1426 |
| TseFI | GTSAC | 2 cut(s) | 619, 724 |
| TseI | GCWGC | 1 cut(s) | 1348 |
| Tsp45I | GTSAC | 2 cut(s) | 619, 724 |
| TspDTI | ATGAA | 9 cut(s) | 98, 121, 290, 735, 950, 1121, 1192, 1203, 1259 |
| TspRI | CASTG | 2 cut(s) | 681, 1426 |
| VpaK11BI | GGWCC | 1 cut(s) | 660 |
| XapI | RAATTY | 2 cut(s) | 934, 1199 |
| XceI | RCATGY | 1 cut(s) | 221 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 374 |
| XmiI | GTMKAC | 1 cut(s) | 197 |
| XspI | CTAG | 1 cut(s) | 1184 |
| Zsp2I | ATGCAT | 1 cut(s) | 1482 |