AT5G15860

methylesterase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
5178157 .. 5181761
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15860.1

Sequence Viewer

Length: 1284 bp
ATGCATTCGCCTCTTCAGACTCAGCAGCCGGAGCAGCGATGCTGGCCGATGACCTCGACGGTATCGGAGATCGAGGAAGTTCTACCCGATGAGGACTCCGATAGAACGACTCTTCTTAACGGTGAACCGTTACGTCGTCGAGTTTCCGGGAAGTCGCCGGTTGACGAAGGACCTCGTCGGATTTTCCGGCAGCAATCGTTCGGTCGCGATATCGGCCACGCGGCAGCTGAAACGTATCTAATTACTGGACTTAGCTTCAAGCTTCTTCGATACCTCGGGGTAGGCTATCGATGGATGACAAAATTACTTGCCCTTACATGTTATGCTATGCTTCTTATGCCTGGCTTTCTTCAAGTTGCATATAGTTATTTTTTCTCAAAGCAAGTCCGGAGGAGTATAGTGTATGGAGATCAACCAAGGAACAGGCTGGATCTGTACTTGCCAAGCAACAACGATGGCTTGAAGCCGGTTGTGGTTTTTGTGACGGGTGGAGCTTGGATTATTGGGTACAAAGCTTGGGGCTCGCTCTTGGGAATGCAGCTAGCAGAAAGAGATATCATTGTAGCATGCCTTGACTACAGGAACTTTCCTCAGGGAACAATTAGTGATATGGTGACTGATGCTTCTCAAGGAATCTCATTTGTCTGCAATAACATCTCTGCATTTGGAGGTGACCCCAACAGGATCTACCTGATGGGGCAATCAGCTGGTGCCCATATAGCCGCTTGTGCTCTATTGGAACAAGCTACTAAAGAATTAAAAGGAGAGAGCATCTCCTGGACAGTGTCCCAGATAAAAGCTTATTTTGGATTATCTGGAGGGTACAATCTATACAAGTTGGTTGATCACTTCCATAATCGGGGTCTGTATCGCTCGATTTTCCTAAGCATAATGGAAGGAGAAGAGTCCTTTGAGAAATTCTCTCCGGAAGTAAGACTGAAAGACCCAGTTGTTGGAAAAGCTGCTTCTCTTTTACCTCCTATTATACTTTTCCACGGATCCTCAGATTATTCCATACCATGCGATGAAAGCAAAACTTTTACAGACGCTCTGCAAGCTGTTGGAGCAAAAGCCGAGCTTGTTTTATACAGCGGAAAGACACATACTGACTTATTTCTTCAGGATCCCTTACGAGGAGGTAAAGACGAACTCTTTGATGACATAGTCTCTGTGATACATGCGGAGGACAATGATGGGCTGACCAAAGACTCGTTGGCTCCTCCCAGAAAGCGTCTTGTACCAGAGTTGTTACTGAAACTGGCTCGTGAGATTAGCCCTTTCTGA

Protein Analysis

427

Amino Acids

47.58

Weight (kDa)

6.11

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 143 - 351 3.1e-28 BD-FAE
COesterase PF00135 143 - 259 1.4e-16 Carboxylesterase family
Abhydrolase_3 PF07859 158 - 368 2.2e-17 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 953
AccII CGCG 2 cut(s) 207, 221
AccIII TCCGGA 2 cut(s) 387, 925
AciI CCGC 4 cut(s) 221, 723, 1092, 1181
AclWI GGATC 6 cut(s) 438, 692, 993, 1006, 1118, 1131
AcoI YGGCCR 2 cut(s) 44, 214
AcsI RAATTY 1 cut(s) 917
AcuI CTGAAG 1 cut(s) 1103
AfaI GTAC 4 cut(s) 437, 509, 824, 1239
AfiI CCNNNNNNNGG 3 cut(s) 859, 953, 1133
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 3 cut(s) 259, 353, 463
AjnI CCWGG 2 cut(s) 340, 776
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 1 cut(s) 1171
AlwI GGATC 6 cut(s) 438, 692, 993, 1006, 1118, 1131
Ama87I CYCGRG 1 cut(s) 275
Aor13HI TCCGGA 2 cut(s) 387, 925
AoxI GGCC 2 cut(s) 44, 214
ApeKI GCWGC 6 cut(s) 25, 34, 190, 224, 538, 962
ApoI RAATTY 1 cut(s) 917
ArsI GACNNNNNNTTYG 2 cut(s) 1136, 1168
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 134, 625, 683
AsuNHI GCTAGC 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 591
BaeGI GKGCMC 1 cut(s) 715
BamHI GGATCC 2 cut(s) 998, 1123
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 524
BauI CACGAG 1 cut(s) 1263
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 6 cut(s) 37, 46, 202, 236, 550, 949
BccI CCATC 4 cut(s) 285, 449, 688, 1187
BciT130I CCWGG 2 cut(s) 342, 778
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 1171
BfaI CTAG 1 cut(s) 542
BfmI CTRYAG 1 cut(s) 577
BisI GCNGC 8 cut(s) 26, 35, 191, 222, 225, 539, 723, 963
BlsI GCNGC 8 cut(s) 27, 36, 192, 223, 226, 540, 724, 964
Bme1390I CCNGG 3 cut(s) 148, 342, 778
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 4 cut(s) 712, 1000, 1125, 1218
BmrFI CCNGG 3 cut(s) 148, 342, 778
BmrI ACTGGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 29, 610, 780
BmtI GCTAGC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 941
BplI GAGNNNNNCTC 4 cut(s) 758, 790, 905, 937
BpmI CTGGAG 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 884
BpuEI CTTGAG 1 cut(s) 612
BpuMI CCSGG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 289
BsaJI CCNNGG 3 cut(s) 274, 416, 994
BsaWI WCCGGW 2 cut(s) 387, 925
Bsc4I CCNNNNNNNGG 3 cut(s) 859, 953, 1133
Bse118I RCCGGY 2 cut(s) 157, 466
Bse1I ACTGG 3 cut(s) 250, 947, 1263
Bse21I CCTNAGG 1 cut(s) 591
BseAI TCCGGA 2 cut(s) 387, 925
BseBI CCWGG 2 cut(s) 342, 778
BseCI ATCGAT 1 cut(s) 289
BseDI CCNNGG 3 cut(s) 274, 416, 994
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 3 cut(s) 859, 953, 1133
BseMII CTCAG 3 cut(s) 35, 605, 1017
BseNI ACTGG 3 cut(s) 250, 947, 1263
BseRI GAGGAG 3 cut(s) 406, 1149, 1209
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 6 cut(s) 37, 46, 202, 236, 550, 949
Bsh1236I CGCG 2 cut(s) 207, 221
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 46, 216
BshNI GGYRCC 1 cut(s) 710
BshVI ATCGAT 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 733
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 7 cut(s) 29, 147, 158, 187, 388, 467, 926
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 3 cut(s) 859, 953, 1133
BsmAI GTCTC 1 cut(s) 1171
BsmFI GGGAC 1 cut(s) 772
BsmI GAATGC 2 cut(s) 4, 540
BsnI GGCC 2 cut(s) 46, 216
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 3 cut(s) 524, 715, 733
Bsp13I TCCGGA 2 cut(s) 387, 925
Bsp143I GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
Bsp68I TCGCGA 1 cut(s) 207
BspACI CCGC 4 cut(s) 221, 723, 1092, 1181
BspANI GGCC 2 cut(s) 46, 216
BspCNI CTCAG 3 cut(s) 34, 604, 1016
BspDI ATCGAT 1 cut(s) 289
BspEI TCCGGA 2 cut(s) 387, 925
BspFNI CGCG 2 cut(s) 207, 221
BspLI GGNNCC 4 cut(s) 712, 1000, 1125, 1218
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 6 cut(s) 438, 692, 993, 1006, 1118, 1131
BspT107I GGYRCC 1 cut(s) 710
BsrFI RCCGGY 2 cut(s) 157, 466
BsrI ACTGG 3 cut(s) 250, 947, 1263
BssAI RCCGGY 2 cut(s) 157, 466
BssECI CCNNGG 3 cut(s) 274, 416, 994
BssMI GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
BssSI CACGAG 1 cut(s) 1263
BssT1I CCWWGG 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 1263
Bst2UI CCWGG 2 cut(s) 342, 778
Bst4CI ACNGT 4 cut(s) 61, 122, 129, 784
Bst6I CTCTTC 3 cut(s) 18, 117, 897
BstC8I GCNNGC 5 cut(s) 44, 524, 543, 568, 1056
BstDEI CTNAG 5 cut(s) 21, 251, 591, 884, 1003
BstDSI CCRYGG 1 cut(s) 994
BstEII GGTNACC 1 cut(s) 671
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 2 cut(s) 207, 221
BstKTI GATC 7 cut(s) 72, 412, 433, 687, 847, 1001, 1126
BstMAI GTCTC 1 cut(s) 1171
BstMBI GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
BstMCI CGRYCG 1 cut(s) 205
BstNI CCWGG 2 cut(s) 342, 778
BstNSI RCATGY 3 cut(s) 321, 570, 1181
BstPI GGTNACC 1 cut(s) 671
BstSCI CCNGG 3 cut(s) 146, 340, 776
BstSFI CTRYAG 1 cut(s) 577
BstSLI GKGCMC 1 cut(s) 715
BstUI CGCG 2 cut(s) 207, 221
BstV1I GCAGC 6 cut(s) 37, 46, 202, 236, 550, 949
BstX2I RGATCY 4 cut(s) 430, 684, 998, 1123
BstYI RGATCY 4 cut(s) 430, 684, 998, 1123
Bsu15I ATCGAT 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 2 cut(s) 46, 216
BsuTUI ATCGAT 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 994
BtgZI GCGATG 2 cut(s) 52, 1038
BtsCI GGATG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 789
BtuMI TCGCGA 1 cut(s) 207
Cac8I GCNNGC 5 cut(s) 44, 524, 543, 568, 1056
Cfr10I RCCGGY 2 cut(s) 157, 466
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 289
CseI GACGC 2 cut(s) 1055, 1220
Csp6I GTAC 4 cut(s) 436, 508, 823, 1238
CviAII CATG 4 cut(s) 318, 567, 1020, 1178
CviQI GTAC 4 cut(s) 436, 508, 823, 1238
DdeI CTNAG 5 cut(s) 21, 251, 591, 884, 1003
DpnI GATC 7 cut(s) 71, 411, 432, 686, 846, 1000, 1125
DpnII GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
EaeI YGGCCR 2 cut(s) 44, 214
Eam1104I CTCTTC 3 cut(s) 18, 117, 897
EarI CTCTTC 3 cut(s) 18, 117, 897
Eco130I CCWWGG 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 524
Eco32I GATATC 2 cut(s) 211, 556
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 1103
Eco81I CCTNAGG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 275
Eco91I GGTNACC 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 340, 776
EcoRV GATATC 2 cut(s) 211, 556
EcoT14I CCWWGG 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 4 cut(s) 321, 570, 1023, 1181
FalI AAGNNNNNCTT 4 cut(s) 1021, 1053, 1062, 1094
FaqI GGGAC 1 cut(s) 772
FatI CATG 4 cut(s) 317, 566, 1019, 1177
FbaI TGATCA 1 cut(s) 844
Fnu4HI GCNGC 8 cut(s) 26, 35, 191, 222, 225, 539, 723, 963
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 8 cut(s) 26, 35, 191, 222, 225, 539, 723, 963
FspBI CTAG 1 cut(s) 542
GluI GCNGC 8 cut(s) 26, 35, 191, 222, 225, 539, 723, 963
GsuI CTGGAG 1 cut(s) 837
HaeIII GGCC 2 cut(s) 46, 216
HapII CCGG 7 cut(s) 29, 147, 158, 187, 388, 467, 926
HgaI GACGC 2 cut(s) 1055, 1220
Hin1II CATG 4 cut(s) 321, 570, 1023, 1181
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 3 cut(s) 260, 513, 798
HinfI GANTC 6 cut(s) 19, 95, 109, 633, 905, 1208
HpaII CCGG 7 cut(s) 29, 147, 158, 187, 388, 467, 926
HphI GGTGA 3 cut(s) 134, 625, 683
Hpy166II GTNNAC 2 cut(s) 125, 163
Hpy188I TCNGA 6 cut(s) 18, 67, 100, 180, 1006, 1283
Hpy188III TCNNGA 6 cut(s) 206, 388, 816, 926, 1121, 1265
Hpy8I GTNNAC 2 cut(s) 125, 163
Hpy99I CGWCG 4 cut(s) 61, 138, 141, 180
HpyAV CCTTC 2 cut(s) 161, 890
HpyCH4III ACNGT 4 cut(s) 61, 122, 129, 784
HpyCH4IV ACGT 2 cut(s) 133, 233
HpyCH4V TGCA 6 cut(s) 4, 359, 538, 648, 662, 1054
HpyF3I CTNAG 5 cut(s) 21, 251, 591, 884, 1003
HpySE526I ACGT 2 cut(s) 133, 233
Hsp92II CATG 4 cut(s) 321, 570, 1023, 1181
Kpn2I TCCGGA 2 cut(s) 387, 925
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
LmnI GCTCC 4 cut(s) 31, 491, 1064, 1222
Lsp1109I GCAGC 6 cut(s) 37, 46, 202, 236, 550, 949
LweI GCATC 3 cut(s) 29, 610, 780
MaeI CTAG 1 cut(s) 542
MaeII ACGT 2 cut(s) 133, 233
MaeIII GTNAC 5 cut(s) 129, 481, 613, 671, 1248
MalI GATC 7 cut(s) 71, 411, 432, 686, 846, 1000, 1125
MboI GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
MboII GAAGA 6 cut(s) 5, 104, 257, 341, 914, 1109
MflI RGATCY 4 cut(s) 430, 684, 998, 1123
MhlI GDGCHC 3 cut(s) 524, 715, 733
MluCI AATT 5 cut(s) 240, 302, 600, 755, 917
MlyI GAGTC 5 cut(s) 13, 89, 103, 914, 1202
MmeI TCCRAC 3 cut(s) 158, 934, 1042
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 2 cut(s) 387, 925
MseI TTAA 2 cut(s) 117, 758
MspA1I CMGCKG 3 cut(s) 227, 707, 1092
MspI CCGG 7 cut(s) 29, 147, 158, 187, 388, 467, 926
MspR9I CCNGG 3 cut(s) 148, 342, 778
Mva1269I GAATGC 2 cut(s) 4, 540
MvaI CCWGG 2 cut(s) 342, 778
MvnI CGCG 2 cut(s) 207, 221
NciI CCSGG 1 cut(s) 148
NdeII GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 4 cut(s) 321, 570, 1023, 1181
NlaIV GGNNCC 4 cut(s) 712, 1000, 1125, 1218
NmeAIII GCCGAG 1 cut(s) 1099
NmuCI GTSAC 3 cut(s) 481, 613, 671
NruI TCGCGA 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 321, 570, 1181
PaeI GCATGC 1 cut(s) 570
PciI ACATGT 1 cut(s) 317
PctI GAATGC 2 cut(s) 4, 540
PfeI GAWTC 1 cut(s) 633
PflFI GACNNNGTC 3 cut(s) 174, 784, 1163
PflMI CCANNNNNTGG 1 cut(s) 953
PfoI TCCNGGA 2 cut(s) 146, 776
PkrI GCNGC 8 cut(s) 27, 36, 192, 223, 226, 540, 724, 964
PleI GAGTC 5 cut(s) 13, 89, 103, 913, 1202
PpsI GAGTC 5 cut(s) 13, 89, 103, 913, 1202
PpuMI RGGWCCY 1 cut(s) 170
PscI ACATGT 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 340, 776
PspEI GGTNACC 1 cut(s) 671
PspGI CCWGG 2 cut(s) 340, 776
PspN4I GGNNCC 4 cut(s) 712, 1000, 1125, 1218
PspPI GGNCC 1 cut(s) 170
PspPPI RGGWCCY 1 cut(s) 170
PsuI RGATCY 4 cut(s) 430, 684, 998, 1123
PsyI GACNNNGTC 3 cut(s) 174, 784, 1163
PvuII CAGCTG 2 cut(s) 227, 707
RruI TCGCGA 1 cut(s) 207
RsaI GTAC 4 cut(s) 437, 509, 824, 1239
RsaNI GTAC 4 cut(s) 436, 508, 823, 1238
SaqAI TTAA 2 cut(s) 117, 758
SatI GCNGC 8 cut(s) 26, 35, 191, 222, 225, 539, 723, 963
Sau3AI GATC 7 cut(s) 69, 409, 430, 684, 844, 998, 1123
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 5 cut(s) 13, 89, 103, 914, 1202
ScrFI CCNGG 3 cut(s) 148, 342, 778
SduI GDGCHC 3 cut(s) 524, 715, 733
SfaNI GCATC 3 cut(s) 29, 610, 780
SfcI CTRYAG 1 cut(s) 577
SinI GGWCC 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
SphI GCATGC 1 cut(s) 570
Sse9I AATT 5 cut(s) 240, 302, 600, 755, 917
SsiI CCGC 4 cut(s) 221, 723, 1092, 1181
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 146, 340, 776
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 4 cut(s) 61, 122, 129, 784
TaiI ACGT 2 cut(s) 136, 236
TaqI TCGA 6 cut(s) 56, 72, 139, 268, 289, 875
TaqII GACCGA 1 cut(s) 191
TasI AATT 5 cut(s) 240, 302, 600, 755, 917
TatI WGTACW 1 cut(s) 435
TauI GCSGC 2 cut(s) 224, 725
TfiI GAWTC 1 cut(s) 633
Tru1I TTAA 2 cut(s) 117, 758
Tru9I TTAA 2 cut(s) 117, 758
TscAI CASTG 1 cut(s) 789
TseFI GTSAC 3 cut(s) 481, 613, 671
TseI GCWGC 6 cut(s) 25, 34, 190, 224, 538, 962
Tsp45I GTSAC 3 cut(s) 481, 613, 671
TspDTI ATGAA 1 cut(s) 1041
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 1 cut(s) 789
Tth111I GACNNNGTC 3 cut(s) 174, 784, 1163
Van91I CCANNNNNTGG 1 cut(s) 953
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 917
XceI RCATGY 3 cut(s) 321, 570, 1181
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XspI CTAG 1 cut(s) 542
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.