Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004932

Physical Location & Seq

Genomic Coordinates Forward (+)

63504650 .. 63506769

Gene Structure 2120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0502800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCAGTTTCAACAAGTTCATCTTTTGTCGAGAAACAAGTGATTGGGCCTGAAGATGGAGTCGAGCAGATTCAGGTACTTCCTGCAGTTGAGGATAAGTATGGTGGAGTTGTTGTGGAATTGAAAGGTGATCAACCCTTGGATTCCAAGGTTTATACTTCTTTGCTCAGATTTTCAATGTCACAATGGAAACAAAAGGGGAAGAAGGGCGTTTGGATCAAATTGCCTAAGCAACTCTCGAACCTTGTTGATGCGACAGTTAAGGAAGGATTTAGGTACCACCATGCCGAACCAGATTACCTAATGCTGGTGCATTGGATACCTGAAACAGTTGATCCTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTCGTAAACACATAACCATATTCATACATGTTTCAAATGTGCTTGTGGTTCAGGAGGCCAATGGCTTTTTCCGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTTGATGAAGGTGAGGATATTTTCGCAGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATGTTAGCATTTAGGCACAGCCACAAGGCATTCTTTAGAAAATCGGATTTGTTTTTCATTTGCATGTTAAAACCACATTCCTTTGACATCCAGAAGCAGGATTTAGAGATTGCGGCAGCACAGTGGATGCCGATTGAGGACTATGCAGCTCAACCTTTCGTCAAAGAAAACAAACTGTTTGATGATGTAGCAAAAATATGTTTAGCGAAATTGGATAAGGGCTATGCTGGTTTTACTTCTCTGGCAACAACTACTTCCCCTGGGAAAACCAGCTACTTGTACTTCAACAAAGGCGTTATGGGAAACCTACGAACTTCTGTTAATGATCAGCAGCAGTGGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010296 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051723 GO:0052689 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01120 ko01130 map00900 map01120 map01130

Pfam Domains

Protein Families

Abhydrolase_3 COesterase

Protein Analysis

301

Amino Acids

34.0

Weight (kDa)

6.32

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	27 - 107	1.9e-28	Nudix hydrolase domain
NUDIX	PF00293	127 - 243	7.1e-21	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02410 AT3G02410 AT3G02410 AT5G15860
fragaria_vesca	FvH4_6g45510 FvH4_6g45510 FvH4_6g45510 FvH4_6g45510 FvH4_6g45510 FvH4_6g45510 FvH4_6g45510
malus_domestica	MD09G1082300.v1.1 MD17G1073000.v1.1
prunus_persica	Prupe.3G241400_v2.0.a1 Prupe.3G241400_v2.0.a1 Prupe.3G241400_v2.0.a1 Prupe.3G241400_v2.0.a1
pyrus_communis	pycom09g00880 pycom17g07390
rosa_chinensis	RchiOBHm_Chr2g0163451
rosa_laevigata	RLG00000021402
rosa_multiflora	Rmu_sc0028601.1_g000003
rosa_roxburghii	Rroxscaffold_2G00087310
rosa_rugosa	Rorug02G0502800 Rorug02G0502900
rosa_samantha	Rh2AG569800 Rh2BG582000 Rh2CG551800 Rh2DG591700
rosa_wichuraiana	Rw2G047170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AciI	CCGC	1 cut(s)	671
AclWI	GGATC	2 cut(s)	224, 329
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	3 cut(s)	78, 278, 839
AfiI	CCNNNNNNNGG	3 cut(s)	56, 307, 655
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	5 cut(s)	12, 124, 177, 405, 844
AjnI	CCWGG	1 cut(s)	817
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	3 cut(s)	506, 707, 831
AluI	AGCT	3 cut(s)	506, 707, 831
Alw26I	GTCTC	2 cut(s)	524, 536
AlwI	GGATC	2 cut(s)	224, 329
AoxI	GGCC	2 cut(s)	47, 426
ApeKI	GCWGC	5 cut(s)	503, 506, 674, 704, 889
Asp718I	GGTACC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	140, 500
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BanI	GGYRCC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	493, 515, 686, 716, 901
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	819
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	2 cut(s)	130, 883
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	524, 536
BfmI	CTRYAG	2 cut(s)	84, 507
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	6 cut(s)	504, 507, 672, 675, 705, 890
BlsI	GCNGC	6 cut(s)	505, 508, 673, 676, 706, 891
Bme1390I	CCNGG	2 cut(s)	362, 819
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	2 cut(s)	362, 819
BmsI	GCATC	2 cut(s)	241, 675
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	138, 147, 817, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 307, 655
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	819
BseDI	CCNNGG	4 cut(s)	138, 147, 817, 818
BseGI	GGATG	2 cut(s)	645, 690
BseLI	CCNNNNNNNGG	3 cut(s)	56, 307, 655
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	5 cut(s)	493, 515, 686, 716, 901
BshFI	GGCC	2 cut(s)	49, 428
BshNI	GGYRCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	3 cut(s)	56, 307, 655
BsmAI	GTCTC	2 cut(s)	524, 536
BsmI	GAATGC	2 cut(s)	369, 587
BsnI	GGCC	2 cut(s)	49, 428
Bsp143I	GATC	4 cut(s)	130, 216, 334, 883
BspACI	CCGC	1 cut(s)	671
BspANI	GGCC	2 cut(s)	49, 428
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	2 cut(s)	88, 511
BspPI	GGATC	2 cut(s)	224, 329
BspT107I	GGYRCC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	4 cut(s)	138, 147, 817, 818
BssMI	GATC	4 cut(s)	130, 216, 334, 883
BssT1I	CCWWGG	2 cut(s)	138, 147
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	4 cut(s)	259, 331, 681, 735
Bst6I	CTCTTC	2 cut(s)	345, 522
BstDEI	CTNAG	2 cut(s)	167, 228
BstF5I	GGATG	2 cut(s)	645, 690
BstKTI	GATC	4 cut(s)	133, 219, 337, 886
BstMAI	GTCTC	2 cut(s)	524, 536
BstMBI	GATC	4 cut(s)	130, 216, 334, 883
BstNI	CCWGG	1 cut(s)	819
BstNSI	RCATGY	2 cut(s)	401, 625
BstSCI	CCNGG	2 cut(s)	360, 817
BstSFI	CTRYAG	2 cut(s)	84, 507
BstV1I	GCAGC	5 cut(s)	493, 515, 686, 716, 901
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	49, 428
BtsCI	GGATG	2 cut(s)	645, 690
BtsI	GCAGTG	1 cut(s)	899
BtsIMutI	CAGTG	2 cut(s)	686, 899
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	77, 277, 838
CviAII	CATG	3 cut(s)	284, 398, 622
CviJI	RGCY	8 cut(s)	49, 428, 435, 506, 579, 707, 780, 831
CviKI_1	RGCY	8 cut(s)	49, 428, 435, 506, 579, 707, 780, 831
CviQI	GTAC	3 cut(s)	77, 277, 838
DdeI	CTNAG	2 cut(s)	167, 228
DpnI	GATC	4 cut(s)	132, 218, 336, 885
DpnII	GATC	4 cut(s)	130, 216, 334, 883
Eam1104I	CTCTTC	2 cut(s)	345, 522
EarI	CTCTTC	2 cut(s)	345, 522
Eco130I	CCWWGG	2 cut(s)	138, 147
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	817
EcoT14I	CCWWGG	2 cut(s)	138, 147
ErhI	CCWWGG	2 cut(s)	138, 147
FaeI	CATG	3 cut(s)	287, 401, 625
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 575, 607
FatI	CATG	3 cut(s)	283, 397, 621
FbaI	TGATCA	2 cut(s)	130, 883
Fnu4HI	GCNGC	6 cut(s)	504, 507, 672, 675, 705, 890
FokI	GGATG	2 cut(s)	632, 697
Fsp4HI	GCNGC	6 cut(s)	504, 507, 672, 675, 705, 890
GluI	GCNGC	6 cut(s)	504, 507, 672, 675, 705, 890
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	49, 428
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	3 cut(s)	287, 401, 625
HinfI	GANTC	3 cut(s)	60, 70, 143
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	2 cut(s)	140, 500
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	3 cut(s)	170, 443, 604
Hpy188III	TCNNGA	4 cut(s)	31, 238, 422, 649
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	199, 260, 479
HpyCH4III	ACNGT	4 cut(s)	259, 331, 681, 735
HpyCH4V	TGCA	5 cut(s)	86, 313, 509, 621, 704
HpyF3I	CTNAG	2 cut(s)	167, 228
Hsp92II	CATG	3 cut(s)	287, 401, 625
KpnI	GGTACC	1 cut(s)	280
Ksp22I	TGATCA	2 cut(s)	130, 883
Kzo9I	GATC	4 cut(s)	130, 216, 334, 883
Lsp1109I	GCAGC	5 cut(s)	493, 515, 686, 716, 901
LweI	GCATC	2 cut(s)	241, 675
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	4 cut(s)	132, 218, 336, 885
MboI	GATC	4 cut(s)	130, 216, 334, 883
MboII	GAAGA	4 cut(s)	65, 214, 332, 539
MluCI	AATT	4 cut(s)	119, 221, 537, 767
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	85, 348, 354, 418, 484, 688
MseI	TTAA	3 cut(s)	261, 626, 879
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	2 cut(s)	362, 819
Mva1269I	GAATGC	2 cut(s)	369, 587
MvaI	CCWGG	1 cut(s)	819
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	4 cut(s)	130, 216, 334, 883
NlaIII	CATG	3 cut(s)	287, 401, 625
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	2 cut(s)	401, 625
PasI	CCCWGGG	1 cut(s)	818
PciI	ACATGT	1 cut(s)	397
PctI	GAATGC	2 cut(s)	369, 587
PfeI	GAWTC	2 cut(s)	70, 143
PkrI	GCNGC	6 cut(s)	505, 508, 673, 676, 706, 891
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	2 cut(s)	88, 511
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	3 cut(s)	78, 278, 839
RsaNI	GTAC	3 cut(s)	77, 277, 838
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	261, 626, 879
SatI	GCNGC	6 cut(s)	504, 507, 672, 675, 705, 890
Sau3AI	GATC	4 cut(s)	130, 216, 334, 883
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	362, 819
SfaNI	GCATC	2 cut(s)	241, 675
SfcI	CTRYAG	2 cut(s)	84, 507
SmiMI	CAYNNNNRTG	1 cut(s)	620
Sse9I	AATT	4 cut(s)	119, 221, 537, 767
SsiI	CCGC	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	360, 817
StyI	CCWWGG	2 cut(s)	138, 147
TaaI	ACNGT	4 cut(s)	259, 331, 681, 735
TaqI	TCGA	3 cut(s)	30, 63, 239
TasI	AATT	4 cut(s)	119, 221, 537, 767
TatI	WGTACW	1 cut(s)	837
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	70, 143
Tru1I	TTAA	3 cut(s)	261, 626, 879
Tru9I	TTAA	3 cut(s)	261, 626, 879
TscAI	CASTG	2 cut(s)	686, 899
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	5 cut(s)	503, 506, 674, 704, 889
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	9, 382, 498, 604
TspRI	CASTG	2 cut(s)	686, 899
XceI	RCATGY	2 cut(s)	401, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.