Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02490 AT5G15980 |
| fragaria_vesca | FvH4_6g45820 |
| malus_domestica | MD09G1079500.v1.1 MD17G1069900.v1.1 |
| prunus_persica | Prupe.3G244800_v2.0.a1 |
| pyrus_communis | pycom09g00630 pycom17g07000 |
| rosa_chinensis | RchiOBHm_Chr2g0164021 |
| rosa_laevigata | RLG00000021433 |
| rosa_multiflora | Rmu_ssc0000432.1_g000010 |
| rosa_rugosa | Rorug02G0506300 |
| rosa_samantha | Rh2AG574400 Rh2BG585000 Rh2CG555900 Rh2DG594600 |
| rosa_wichuraiana | Rw2G047510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1040 |
| AccI | GTMKAC | 1 cut(s) | 1365 |
| AccII | CGCG | 1 cut(s) | 100 |
| AccIII | TCCGGA | 2 cut(s) | 1382, 1930 |
| AciI | CCGC | 3 cut(s) | 236, 472, 659 |
| AclWI | GGATC | 2 cut(s) | 137, 165 |
| AcsI | RAATTY | 2 cut(s) | 581, 1358 |
| AcuI | CTGAAG | 2 cut(s) | 621, 1800 |
| AcyI | GRCGYC | 1 cut(s) | 1412 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 131 |
| AjnI | CCWGG | 2 cut(s) | 124, 800 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 392, 424 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1269, 1301 |
| Alw21I | GWGCWC | 2 cut(s) | 188, 1585 |
| Alw26I | GTCTC | 3 cut(s) | 962, 1419, 1501 |
| Alw44I | GTGCAC | 1 cut(s) | 1581 |
| AlwI | GGATC | 2 cut(s) | 137, 165 |
| Aor13HI | TCCGGA | 2 cut(s) | 1382, 1930 |
| ApaLI | GTGCAC | 1 cut(s) | 1581 |
| ApeKI | GCWGC | 2 cut(s) | 469, 1994 |
| ApoI | RAATTY | 2 cut(s) | 581, 1358 |
| AsuC2I | CCSGG | 1 cut(s) | 1441 |
| AsuHPI | GGTGA | 6 cut(s) | 113, 308, 587, 722, 1307, 1648 |
| AsuII | TTCGAA | 2 cut(s) | 34, 1851 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BaeGI | GKGCMC | 2 cut(s) | 1585, 1910 |
| BanII | GRGCYC | 1 cut(s) | 188 |
| BbsI | GAAGAC | 1 cut(s) | 1688 |
| Bbv12I | GWGCWC | 2 cut(s) | 188, 1585 |
| BbvCI | CCTCAGC | 2 cut(s) | 258, 614 |
| BbvI | GCAGC | 2 cut(s) | 456, 1981 |
| BccI | CCATC | 3 cut(s) | 51, 587, 1664 |
| BciT130I | CCWGG | 2 cut(s) | 126, 802 |
| BclI | TGATCA | 1 cut(s) | 1011 |
| BcnI | CCSGG | 1 cut(s) | 1441 |
| BcoDI | GTCTC | 3 cut(s) | 962, 1419, 1501 |
| BfaI | CTAG | 5 cut(s) | 882, 1127, 1290, 1394, 1940 |
| BfmI | CTRYAG | 1 cut(s) | 1977 |
| BfuAI | ACCTGC | 1 cut(s) | 1040 |
| BisI | GCNGC | 2 cut(s) | 470, 1995 |
| BlsI | GCNGC | 2 cut(s) | 471, 1996 |
| Bme1390I | CCNGG | 3 cut(s) | 126, 802, 1441 |
| BmiI | GGNNCC | 1 cut(s) | 1724 |
| BmrFI | CCNGG | 3 cut(s) | 126, 802, 1441 |
| BmsI | GCATC | 4 cut(s) | 15, 456, 1325, 1552 |
| BpiI | GAAGAC | 1 cut(s) | 1688 |
| BpmI | CTGGAG | 1 cut(s) | 620 |
| Bpu10I | CCTNAGC | 2 cut(s) | 258, 614 |
| Bpu14I | TTCGAA | 2 cut(s) | 34, 1851 |
| BpuEI | CTTGAG | 2 cut(s) | 1085, 1240 |
| BpuMI | CCSGG | 1 cut(s) | 1441 |
| BsaHI | GRCGYC | 1 cut(s) | 1412 |
| BsaJI | CCNNGG | 3 cut(s) | 124, 125, 800 |
| BsaWI | WCCGGW | 3 cut(s) | 822, 1382, 1930 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 934, 964, 1269, 1299 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 131 |
| Bse1I | ACTGG | 2 cut(s) | 412, 1771 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| Bse3DI | GCAATG | 3 cut(s) | 1050, 1255, 1413 |
| BseAI | TCCGGA | 2 cut(s) | 1382, 1930 |
| BseBI | CCWGG | 2 cut(s) | 126, 802 |
| BseDI | CCNNGG | 3 cut(s) | 124, 125, 800 |
| BseGI | GGATG | 4 cut(s) | 307, 1379, 1675, 1939 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseMI | GCAATG | 3 cut(s) | 1050, 1255, 1413 |
| BseMII | CTCAG | 5 cut(s) | 92, 249, 426, 605, 611 |
| BseNI | ACTGG | 2 cut(s) | 412, 1771 |
| BseRI | GAGGAG | 2 cut(s) | 955, 1290 |
| BseSI | GKGCMC | 2 cut(s) | 1585, 1910 |
| BseXI | GCAGC | 2 cut(s) | 456, 1981 |
| Bsh1236I | CGCG | 1 cut(s) | 100 |
| BsiHKAI | GWGCWC | 2 cut(s) | 188, 1585 |
| BsiSI | CCGG | 4 cut(s) | 823, 1383, 1440, 1931 |
| BslFI | GGGAC | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 3 cut(s) | 962, 1419, 1501 |
| BsmBI | CGTCTC | 1 cut(s) | 1419 |
| BsmFI | GGGAC | 1 cut(s) | 147 |
| Bsp119I | TTCGAA | 2 cut(s) | 34, 1851 |
| Bsp1286I | GDGCHC | 3 cut(s) | 188, 1585, 1910 |
| Bsp13I | TCCGGA | 2 cut(s) | 1382, 1930 |
| Bsp143I | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| Bsp68I | TCGCGA | 1 cut(s) | 100 |
| BspACI | CCGC | 3 cut(s) | 236, 472, 659 |
| BspCNI | CTCAG | 5 cut(s) | 91, 250, 427, 606, 612 |
| BspEI | TCCGGA | 2 cut(s) | 1382, 1930 |
| BspFNI | CGCG | 1 cut(s) | 100 |
| BspHI | TCATGA | 1 cut(s) | 1746 |
| BspLI | GGNNCC | 1 cut(s) | 1724 |
| BspMI | ACCTGC | 1 cut(s) | 1040 |
| BspPI | GGATC | 2 cut(s) | 137, 165 |
| BspT104I | TTCGAA | 2 cut(s) | 34, 1851 |
| BsrDI | GCAATG | 3 cut(s) | 1050, 1255, 1413 |
| BsrI | ACTGG | 2 cut(s) | 412, 1771 |
| BssECI | CCNNGG | 3 cut(s) | 124, 125, 800 |
| BssMI | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| BssNI | GRCGYC | 1 cut(s) | 1412 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 802 |
| Bst4CI | ACNGT | 2 cut(s) | 268, 1880 |
| Bst6I | CTCTTC | 4 cut(s) | 115, 237, 1265, 1952 |
| BstACI | GRCGYC | 1 cut(s) | 1412 |
| BstBI | TTCGAA | 2 cut(s) | 34, 1851 |
| BstC8I | GCNNGC | 1 cut(s) | 234 |
| BstDEI | CTNAG | 9 cut(s) | 78, 196, 258, 435, 443, 614, 620, 1325, 2004 |
| BstEII | GGTNACC | 1 cut(s) | 82 |
| BstF5I | GGATG | 4 cut(s) | 307, 1379, 1675, 1939 |
| BstFNI | CGCG | 1 cut(s) | 100 |
| BstKTI | GATC | 6 cut(s) | 104, 132, 173, 844, 1014, 1717 |
| BstMAI | GTCTC | 3 cut(s) | 962, 1419, 1501 |
| BstMBI | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 25, 625, 2000 |
| BstNI | CCWGG | 2 cut(s) | 126, 802 |
| BstPI | GGTNACC | 1 cut(s) | 82 |
| BstSCI | CCNGG | 3 cut(s) | 124, 800, 1439 |
| BstSFI | CTRYAG | 1 cut(s) | 1977 |
| BstSLI | GKGCMC | 2 cut(s) | 1585, 1910 |
| BstUI | CGCG | 1 cut(s) | 100 |
| BstV1I | GCAGC | 2 cut(s) | 456, 1981 |
| BstV2I | GAAGAC | 1 cut(s) | 1688 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BtgZI | GCGATG | 1 cut(s) | 81 |
| BtsCI | GGATG | 4 cut(s) | 307, 1379, 1675, 1939 |
| BtsI | GCAGTG | 2 cut(s) | 1081, 1113 |
| BtsIMutI | CAGTG | 7 cut(s) | 213, 419, 1081, 1113, 1776, 1839, 1885 |
| BtuMI | TCGCGA | 1 cut(s) | 100 |
| BveI | ACCTGC | 1 cut(s) | 1040 |
| Cac8I | GCNNGC | 1 cut(s) | 234 |
| CciI | TCATGA | 1 cut(s) | 1746 |
| CseI | GACGC | 1 cut(s) | 1401 |
| CviAII | CATG | 6 cut(s) | 463, 542, 854, 1309, 1747, 1957 |
| DdeI | CTNAG | 9 cut(s) | 78, 196, 258, 435, 443, 614, 620, 1325, 2004 |
| DpnI | GATC | 6 cut(s) | 103, 131, 172, 843, 1013, 1716 |
| DpnII | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| Eam1104I | CTCTTC | 4 cut(s) | 115, 237, 1265, 1952 |
| EarI | CTCTTC | 4 cut(s) | 115, 237, 1265, 1952 |
| EciI | GGCGGA | 1 cut(s) | 674 |
| Ecl136II | GAGCTC | 1 cut(s) | 186 |
| Eco24I | GRGCYC | 1 cut(s) | 188 |
| Eco32I | GATATC | 1 cut(s) | 8 |
| Eco53kI | GAGCTC | 1 cut(s) | 186 |
| Eco57I | CTGAAG | 2 cut(s) | 621, 1800 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| Eco91I | GGTNACC | 1 cut(s) | 82 |
| EcoICRI | GAGCTC | 1 cut(s) | 186 |
| EcoO65I | GGTNACC | 1 cut(s) | 82 |
| EcoRII | CCWGG | 2 cut(s) | 124, 800 |
| EcoRV | GATATC | 1 cut(s) | 8 |
| EcoT22I | ATGCAT | 1 cut(s) | 1567 |
| EcoT38I | GRGCYC | 1 cut(s) | 188 |
| Esp3I | CGTCTC | 1 cut(s) | 1419 |
| FaeI | CATG | 6 cut(s) | 466, 545, 857, 1312, 1750, 1960 |
| FaqI | GGGAC | 1 cut(s) | 147 |
| FatI | CATG | 6 cut(s) | 462, 541, 853, 1308, 1746, 1956 |
| FbaI | TGATCA | 1 cut(s) | 1011 |
| FblI | GTMKAC | 1 cut(s) | 1365 |
| Fnu4HI | GCNGC | 2 cut(s) | 470, 1995 |
| FokI | GGATG | 4 cut(s) | 314, 1366, 1682, 1946 |
| FriOI | GRGCYC | 1 cut(s) | 188 |
| Fsp4HI | GCNGC | 2 cut(s) | 470, 1995 |
| FspBI | CTAG | 5 cut(s) | 882, 1127, 1290, 1394, 1940 |
| GluI | GCNGC | 2 cut(s) | 470, 1995 |
| GsuI | CTGGAG | 1 cut(s) | 620 |
| HapII | CCGG | 4 cut(s) | 823, 1383, 1440, 1931 |
| HgaI | GACGC | 1 cut(s) | 1401 |
| Hin1I | GRCGYC | 1 cut(s) | 1412 |
| Hin1II | CATG | 6 cut(s) | 466, 545, 857, 1312, 1750, 1960 |
| HincII | GTYRAC | 2 cut(s) | 1027, 1650 |
| HindII | GTYRAC | 2 cut(s) | 1027, 1650 |
| HindIII | AAGCTT | 7 cut(s) | 217, 626, 807, 1455, 1571, 1630, 1686 |
| HpaII | CCGG | 4 cut(s) | 823, 1383, 1440, 1931 |
| HphI | GGTGA | 6 cut(s) | 113, 308, 587, 722, 1307, 1648 |
| Hpy166II | GTNNAC | 5 cut(s) | 152, 1027, 1366, 1583, 1650 |
| Hpy188I | TCNGA | 6 cut(s) | 134, 229, 588, 640, 841, 921 |
| Hpy8I | GTNNAC | 5 cut(s) | 152, 1027, 1366, 1583, 1650 |
| HpyAV | CCTTC | 6 cut(s) | 307, 355, 691, 1336, 1418, 1792 |
| HpyCH4III | ACNGT | 2 cut(s) | 268, 1880 |
| HpyCH4IV | ACGT | 1 cut(s) | 784 |
| HpyCH4V | TGCA | 9 cut(s) | 142, 1043, 1303, 1316, 1542, 1565, 1583, 1664, 1871 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 25, 625, 2000 |
| HpyF3I | CTNAG | 9 cut(s) | 78, 196, 258, 435, 443, 614, 620, 1325, 2004 |
| HpySE526I | ACGT | 1 cut(s) | 784 |
| Hsp92I | GRCGYC | 1 cut(s) | 1412 |
| Hsp92II | CATG | 6 cut(s) | 466, 545, 857, 1312, 1750, 1960 |
| Kpn2I | TCCGGA | 2 cut(s) | 1382, 1930 |
| Ksp22I | TGATCA | 1 cut(s) | 1011 |
| Kzo9I | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| LmnI | GCTCC | 1 cut(s) | 134 |
| Lsp1109I | GCAGC | 2 cut(s) | 456, 1981 |
| LweI | GCATC | 4 cut(s) | 15, 456, 1325, 1552 |
| MaeI | CTAG | 5 cut(s) | 882, 1127, 1290, 1394, 1940 |
| MaeII | ACGT | 1 cut(s) | 784 |
| MaeIII | GTNAC | 7 cut(s) | 82, 575, 1064, 1111, 1588, 1636, 1751 |
| MalI | GATC | 6 cut(s) | 103, 131, 172, 843, 1013, 1716 |
| MboI | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| MhlI | GDGCHC | 3 cut(s) | 188, 1585, 1910 |
| MluCI | AATT | 5 cut(s) | 581, 652, 1007, 1107, 1358 |
| MlyI | GAGTC | 3 cut(s) | 845, 1503, 1702 |
| MmeI | TCCRAC | 2 cut(s) | 300, 1462 |
| Mph1103I | ATGCAT | 1 cut(s) | 1567 |
| MroI | TCCGGA | 2 cut(s) | 1382, 1930 |
| MseI | TTAA | 4 cut(s) | 420, 753, 849, 1211 |
| MspI | CCGG | 4 cut(s) | 823, 1383, 1440, 1931 |
| MspR9I | CCNGG | 3 cut(s) | 126, 802, 1441 |
| MvaI | CCWGG | 2 cut(s) | 126, 802 |
| MvnI | CGCG | 1 cut(s) | 100 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 25, 625, 2000 |
| NciI | CCSGG | 1 cut(s) | 1441 |
| NdeII | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| NlaIII | CATG | 6 cut(s) | 466, 545, 857, 1312, 1750, 1960 |
| NlaIV | GGNNCC | 1 cut(s) | 1724 |
| NmuCI | GTSAC | 3 cut(s) | 575, 1111, 1636 |
| NruI | TCGCGA | 1 cut(s) | 100 |
| NsiI | ATGCAT | 1 cut(s) | 1567 |
| NspV | TTCGAA | 2 cut(s) | 34, 1851 |
| PagI | TCATGA | 1 cut(s) | 1746 |
| PasI | CCCWGGG | 1 cut(s) | 125 |
| PfoI | TCCNGGA | 1 cut(s) | 1439 |
| PkrI | GCNGC | 2 cut(s) | 471, 1996 |
| PleI | GAGTC | 3 cut(s) | 844, 1502, 1701 |
| PpsI | GAGTC | 3 cut(s) | 844, 1502, 1701 |
| Psp124BI | GAGCTC | 1 cut(s) | 188 |
| Psp6I | CCWGG | 2 cut(s) | 124, 800 |
| PspEI | GGTNACC | 1 cut(s) | 82 |
| PspGI | CCWGG | 2 cut(s) | 124, 800 |
| PspN4I | GGNNCC | 1 cut(s) | 1724 |
| RruI | TCGCGA | 1 cut(s) | 100 |
| SacI | GAGCTC | 1 cut(s) | 188 |
| SaqAI | TTAA | 4 cut(s) | 420, 753, 849, 1211 |
| SatI | GCNGC | 2 cut(s) | 470, 1995 |
| Sau3AI | GATC | 6 cut(s) | 101, 129, 170, 841, 1011, 1714 |
| SchI | GAGTC | 3 cut(s) | 845, 1503, 1702 |
| ScrFI | CCNGG | 3 cut(s) | 126, 802, 1441 |
| SduI | GDGCHC | 3 cut(s) | 188, 1585, 1910 |
| SfaNI | GCATC | 4 cut(s) | 15, 456, 1325, 1552 |
| SfcI | CTRYAG | 1 cut(s) | 1977 |
| SfuI | TTCGAA | 2 cut(s) | 34, 1851 |
| SmlI | CTYRAG | 2 cut(s) | 1100, 1219 |
| SmoI | CTYRAG | 2 cut(s) | 1100, 1219 |
| Sse9I | AATT | 5 cut(s) | 581, 652, 1007, 1107, 1358 |
| SsiI | CCGC | 3 cut(s) | 236, 472, 659 |
| SspMI | CTAG | 5 cut(s) | 882, 1127, 1290, 1394, 1940 |
| SstI | GAGCTC | 1 cut(s) | 188 |
| StyD4I | CCNGG | 3 cut(s) | 124, 800, 1439 |
| TaaI | ACNGT | 2 cut(s) | 268, 1880 |
| TaiI | ACGT | 1 cut(s) | 787 |
| TaqI | TCGA | 8 cut(s) | 34, 214, 326, 378, 449, 1470, 1811, 1851 |
| TasI | AATT | 5 cut(s) | 581, 652, 1007, 1107, 1358 |
| Tru1I | TTAA | 4 cut(s) | 420, 753, 849, 1211 |
| Tru9I | TTAA | 4 cut(s) | 420, 753, 849, 1211 |
| TscAI | CASTG | 7 cut(s) | 213, 419, 1088, 1120, 1783, 1839, 1885 |
| TseFI | GTSAC | 3 cut(s) | 575, 1111, 1636 |
| TseI | GCWGC | 2 cut(s) | 469, 1994 |
| Tsp45I | GTSAC | 3 cut(s) | 575, 1111, 1636 |
| TspGWI | ACGGA | 2 cut(s) | 1202, 1910 |
| TspRI | CASTG | 7 cut(s) | 213, 419, 1088, 1120, 1783, 1839, 1885 |
| VneI | GTGCAC | 1 cut(s) | 1581 |
| XapI | RAATTY | 2 cut(s) | 581, 1358 |
| XbaI | TCTAGA | 3 cut(s) | 1126, 1393, 1939 |
| XmiI | GTMKAC | 1 cut(s) | 1365 |
| XspI | CTAG | 5 cut(s) | 882, 1127, 1290, 1394, 1940 |
| Zsp2I | ATGCAT | 1 cut(s) | 1567 |