MD09G1079500.v1.1

Pentatricopeptide repeat-containing protein At3g02490

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
5580183 .. 5582238
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1079500.v1.1.491

Sequence Viewer

Length: 2001 bp
ATGCAAGCGATGAGACAGCAATGGCGTTTGCTGCTCCTCCGAGCTCGCCGCCGCCCTCCGCCGCACGAATTCATAAAACCGTCGTGCTCTCAGGTAAACTCCCAATTCAATCTCCATTCACTTAGCTCTTTCACTTCTCTGTTCCACAATGACACTCTCGACCCAAAGCTTTCACCTTTGCTGCCCATTTTCAATTCCCAATTAGCAAAATCGATAAACTCTAGAAACCCCTTGTCCCGCAGCCTCTCATCTGAGCCGGCACTCGAGCTCAAGGACTCCGATCATGGAGTTGTAGCTGATATTTTCGCTAGTCCTAAGGGTGCGGATGAGATTAGGAAAGAATTGGAGTCGAACAATGTTGTGATTAGCCATGAGTTGGTGTTGAAGGTTTTGAAGAGCCTCGAATCGAGCCCCGATGTGGCGAGGAGGTTTTTCGATTGGGTTTTGTCATGTGAAGGTGAGAGATTGAGCTCCAAGTCGTATAATTCGATGCTGAGTGTTTTCGGGGTTAATGGGTTTGTGAATGAATTTTGGGATTTGGTTGCTGTTATGAAGAAGAAAGGGTATGGTGTGTCGAAATGGGTGCAGGATAAAGCTTTAGAAAAGTTTGAGAAGGATGGGTTGGATGGTGATGTTGAGAAGTTGAGAGCGGTTTTTGCAGCGGGGTCTACTGACAATTCCCCGGATAAGATTTGTTCGAGGGTGTGTAAGATTGTTAGAAATGAGGTGTGGAGTGAGGATGTTGAGAGGCAAATACGGGATTTGAGTGTTGCATTTTCTAGTGACATGGTTAAAATGGCGTTGGAAAGTCTTAGTACAGAGCCAGCAAAAGCACTGATATTTTTTCGGTGGATGGAGGAGAGTGGTCTGTTGAAGCATGATCAACAGACTTATAATGCTATTGCTAGGGTATTGGGCAGGGAAGATTGCATAGATAGGTTTTGGAAAGTTGTTGATGAAATGAGGAGCAATGGGTATGAACTGGAGATGGAGACGTATGTTAAGGTTTTAGGGCGATTTTGTAAGAGGAAAATGATGAAGGATGCTGTGGACTTGTATGAGTTTGCAATGGCTGGCGCAAATAAGCCTTCGGTGCATTGTTGTACCTTTCTGTTGAGGAAAATAGCGGGTGGTAAGCAGCTGGATATGAGTCTATTTTCTAGAGTTGTGAGGATTTTTGCAGATAATGGGAATGTGCTGACAGATTCAATGCTCAATGCAGTCCTTAAGTCTCTGAATGGTGTTGGTAGATATGGACAGTGCAATACGGTTTTCAAAGCAATGGAGGAAGGTGGACTTGTAGCTAGTGGTGGTTTACAGAGTAGGATTGCATTCCGGCTTAGTAGTGCTGGCAAAAAGGGGGCAACAAGTGAATTCATTAGTGATATGGAAGCTTCTGGGCGCAGTTCGGATTACAAGATATGGTCGTCCTTAATTGAGGGTCACTGTGTAGCTGGTGCTCTCGATAAGGCTTCCGATTGTTTCCAAAAGATGCTTGAAAAAGAGGGGGCTGCCTCTGCTGGTTATGCTTTTGATATATTAGTAGATGCATATTGCAGAAAAAACAGTGCGATAGATGCATACAAGTTACTCAATGATTCGGTCAATGAAGGGCAACTCAAGCCATGGCATACCACATACAAGTTGTTGATAAGTAAGTTATTGGTTCAGGGTGGATTCAAGGATGCTCTGAATATTCTGGGTATGATGAAAAATCATGGATTCCCTCCTTTTATTGATCCATTCGTTGAGTATGTATCAAAGTCTGGAACAGGTGAAGATGCTTTAGCTTTCCTGAAGGCGATGACTTCAAGGAGGTTTCCATCTACCACCGTCTTCCTCAATGTATTTGAAGCTTATTTCAAGGCTGGACGGCACAGTGAAGCACAGAATTTCCTTTCCAAATGTCCAGGCTACATCCGCAACCATGCTGATGTGTTGGATCTATTTTATTCTGCAAAATCTGGAGAACGTGCTGCTCCCACGGCGGTGGCTGCTTAG

Protein Analysis

667

Amino Acids

74.26

Weight (kDa)

8.58

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02490 AT5G15980
fragaria_vesca FvH4_6g45820
malus_domestica MD09G1079500.v1.1 MD17G1069900.v1.1
prunus_persica Prupe.3G244800_v2.0.a1
pyrus_communis pycom09g00630 pycom17g07000
rosa_chinensis RchiOBHm_Chr2g0164021
rosa_laevigata RLG00000021433
rosa_multiflora Rmu_ssc0000432.1_g000010
rosa_rugosa Rorug02G0506300
rosa_samantha Rh2AG574400 Rh2BG585000 Rh2CG555900 Rh2DG594600
rosa_wichuraiana Rw2G047510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AccB7I CCANNNNNTGG 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 668
AclWI GGATC 2 cut(s) 1733, 1950
AcsI RAATTY 4 cut(s) 68, 527, 1373, 1891
AcuI CTGAAG 1 cut(s) 1817
AfaI GTAC 2 cut(s) 817, 1105
AfiI CCNNNNNNNGG 2 cut(s) 376, 418
AflII CTTAAG 1 cut(s) 1226
AjnI CCWGG 1 cut(s) 1909
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AleI CACNNNNGTG 1 cut(s) 1988
Alw21I GWGCWC 5 cut(s) 46, 89, 270, 473, 1462
Alw26I GTCTC 3 cut(s) 7, 986, 1236
AlwI GGATC 2 cut(s) 1733, 1950
Ama87I CYCGRG 1 cut(s) 263
ApeKI GCWGC 8 cut(s) 31, 181, 240, 659, 1138, 1511, 1976, 1994
ApoI RAATTY 4 cut(s) 68, 527, 1373, 1891
AspLEI GCGC 2 cut(s) 1079, 1404
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 4 cut(s) 165, 470, 641, 1787
AvaI CYCGRG 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 315
BanII GRGCYC 4 cut(s) 46, 270, 413, 473
BbsI GAAGAC 1 cut(s) 1828
Bbv12I GWGCWC 5 cut(s) 46, 89, 270, 473, 1462
BbvI GCAGC 8 cut(s) 18, 168, 252, 671, 1150, 1498, 1963, 1981
BccI CCATC 5 cut(s) 611, 620, 847, 982, 1831
BceAI ACGGC 1 cut(s) 1889
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 1 cut(s) 1911
BclI TGATCA 1 cut(s) 880
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 7, 986, 1236
BfaI CTAG 6 cut(s) 222, 309, 780, 906, 1161, 1305
BfrI CTTAAG 1 cut(s) 1226
Bme1390I CCNGG 2 cut(s) 683, 1911
BmeT110I CYCGRG 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 683, 1911
BmsI GCATC 7 cut(s) 480, 1033, 1482, 1537, 1567, 1675, 1771
BpiI GAAGAC 1 cut(s) 1828
BpmI CTGGAG 2 cut(s) 1004, 1986
BpuEI CTTGAG 2 cut(s) 254, 1604
BpuMI CCSGG 1 cut(s) 683
Bsa29I ATCGAT 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 681, 1625, 1983
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 418
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 987
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 4 cut(s) 26, 976, 1074, 1287
BseBI CCWGG 1 cut(s) 1911
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 681, 1625, 1983
BseGI GGATG 8 cut(s) 331, 622, 631, 745, 858, 1048, 1690, 1917
BseLI CCNNNNNNNGG 2 cut(s) 376, 418
BseMI GCAATG 4 cut(s) 26, 976, 1074, 1287
BseMII CTCAG 3 cut(s) 104, 243, 485
BseNI ACTGG 1 cut(s) 987
BseRI GAGGAG 4 cut(s) 26, 439, 872, 979
BseXI GCAGC 8 cut(s) 18, 168, 252, 671, 1150, 1498, 1963, 1981
BsgI GTGCAG 1 cut(s) 605
BshVI ATCGAT 1 cut(s) 212
BsiHKAI GWGCWC 5 cut(s) 46, 89, 270, 473, 1462
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 3 cut(s) 257, 683, 1336
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 376, 418
BsmAI GTCTC 3 cut(s) 7, 986, 1236
BsmBI CGTCTC 1 cut(s) 986
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 1331
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 6 cut(s) 46, 89, 270, 413, 473, 1462
Bsp143I GATC 4 cut(s) 280, 880, 1738, 1942
Bsp19I CCATGG 1 cut(s) 1625
BspCNI CTCAG 3 cut(s) 103, 244, 486
BspDI ATCGAT 1 cut(s) 212
BspPI GGATC 2 cut(s) 1733, 1950
BspQI GCTCTTC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 1226
BsrBI CCGCTC 1 cut(s) 650
BsrDI GCAATG 4 cut(s) 26, 976, 1074, 1287
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 1 cut(s) 987
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 681, 1625, 1983
BssMI GATC 4 cut(s) 280, 880, 1738, 1942
BssT1I CCWWGG 1 cut(s) 1625
Bst2UI CCWGG 1 cut(s) 1911
Bst4CI ACNGT 7 cut(s) 81, 1260, 1270, 1448, 1568, 1834, 1880
Bst6I CTCTTC 1 cut(s) 389
BstAFI CTTAAG 1 cut(s) 1226
BstC8I GCNNGC 6 cut(s) 6, 46, 258, 825, 1075, 1351
BstDEI CTNAG 8 cut(s) 90, 122, 252, 315, 494, 812, 1340, 1998
BstDSI CCRYGG 2 cut(s) 1625, 1983
BstF5I GGATG 8 cut(s) 331, 622, 631, 745, 858, 1048, 1690, 1917
BstHHI GCGC 2 cut(s) 1079, 1404
BstKTI GATC 4 cut(s) 283, 883, 1741, 1945
BstMAI GTCTC 3 cut(s) 7, 986, 1236
BstMBI GATC 4 cut(s) 280, 880, 1738, 1942
BstNI CCWGG 1 cut(s) 1911
BstSCI CCNGG 2 cut(s) 681, 1909
BstV1I GCAGC 8 cut(s) 18, 168, 252, 671, 1150, 1498, 1963, 1981
BstV2I GAAGAC 1 cut(s) 1828
BstX2I RGATCY 1 cut(s) 1942
BstXI CCANNNNNNTGG 1 cut(s) 1990
BstYI RGATCY 1 cut(s) 1942
Bsu15I ATCGAT 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 315
BsuTUI ATCGAT 1 cut(s) 212
BtgI CCRYGG 2 cut(s) 1625, 1983
BtgZI GCGATG 2 cut(s) 23, 1817
BtsCI GGATG 8 cut(s) 331, 622, 631, 745, 858, 1048, 1690, 1917
BtsIMutI CAGTG 5 cut(s) 833, 1265, 1444, 1573, 1885
Cac8I GCNNGC 6 cut(s) 6, 46, 258, 825, 1075, 1351
CfoI GCGC 2 cut(s) 1079, 1404
Cfr10I RCCGGY 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 212
Csp6I GTAC 2 cut(s) 816, 1104
CviAII CATG 8 cut(s) 284, 371, 450, 787, 878, 1626, 1718, 1928
CviQI GTAC 2 cut(s) 816, 1104
DdeI CTNAG 8 cut(s) 90, 122, 252, 315, 494, 812, 1340, 1998
DpnI GATC 4 cut(s) 282, 882, 1740, 1944
DpnII GATC 4 cut(s) 280, 880, 1738, 1942
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 3 cut(s) 44, 268, 471
Eco130I CCWWGG 1 cut(s) 1625
Eco24I GRGCYC 4 cut(s) 46, 270, 413, 473
Eco53kI GAGCTC 3 cut(s) 44, 268, 471
Eco57I CTGAAG 1 cut(s) 1817
Eco81I CCTNAGG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 3 cut(s) 44, 268, 471
EcoRI GAATTC 2 cut(s) 68, 1373
EcoRII CCWGG 1 cut(s) 1909
EcoT14I CCWWGG 1 cut(s) 1625
EcoT22I ATGCAT 2 cut(s) 1552, 1582
EcoT38I GRGCYC 4 cut(s) 46, 270, 413, 473
ErhI CCWWGG 1 cut(s) 1625
Esp3I CGTCTC 1 cut(s) 986
FaeI CATG 8 cut(s) 287, 374, 453, 790, 881, 1629, 1721, 1931
FalI AAGNNNNNCTT 2 cut(s) 1281, 1313
FaqI GGGAC 1 cut(s) 220
FatI CATG 8 cut(s) 283, 370, 449, 786, 877, 1625, 1717, 1927
FauI CCCGC 3 cut(s) 245, 655, 1120
FbaI TGATCA 1 cut(s) 880
FblI GTMKAC 1 cut(s) 668
FokI GGATG 8 cut(s) 338, 629, 638, 752, 865, 1055, 1697, 1904
FriOI GRGCYC 4 cut(s) 46, 270, 413, 473
FspBI CTAG 6 cut(s) 222, 309, 780, 906, 1161, 1305
GlaI GCGC 2 cut(s) 1078, 1403
GsuI CTGGAG 2 cut(s) 1004, 1986
HapII CCGG 3 cut(s) 257, 683, 1336
HhaI GCGC 2 cut(s) 1079, 1404
Hin1II CATG 8 cut(s) 287, 374, 453, 790, 881, 1629, 1721, 1931
Hin6I GCGC 2 cut(s) 1077, 1402
HinP1I GCGC 2 cut(s) 1077, 1402
HindIII AAGCTT 4 cut(s) 167, 594, 1392, 1854
HinfI GANTC 8 cut(s) 275, 347, 404, 1150, 1205, 1598, 1677, 1722
HpaII CCGG 3 cut(s) 257, 683, 1336
HphI GGTGA 4 cut(s) 165, 470, 641, 1787
Hpy166II GTNNAC 5 cut(s) 97, 669, 1051, 1295, 1316
Hpy188I TCNGA 7 cut(s) 41, 253, 280, 1236, 1411, 1477, 1692
Hpy188III TCNNGA 7 cut(s) 158, 222, 1161, 1463, 1767, 1795, 1965
Hpy8I GTNNAC 5 cut(s) 97, 669, 1051, 1295, 1316
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 8 cut(s) 379, 449, 607, 1033, 1098, 1283, 1604, 1792
HpyCH4III ACNGT 7 cut(s) 81, 1260, 1270, 1448, 1568, 1834, 1880
HpyCH4IV ACGT 2 cut(s) 995, 1972
HpyF3I CTNAG 8 cut(s) 90, 122, 252, 315, 494, 812, 1340, 1998
HpySE526I ACGT 2 cut(s) 995, 1972
Hsp92II CATG 8 cut(s) 287, 374, 453, 790, 881, 1629, 1721, 1931
HspAI GCGC 2 cut(s) 1077, 1402
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 4 cut(s) 280, 880, 1738, 1942
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 4 cut(s) 39, 476, 966, 1984
Lsp1109I GCAGC 8 cut(s) 18, 168, 252, 671, 1150, 1498, 1963, 1981
LweI GCATC 7 cut(s) 480, 1033, 1482, 1537, 1567, 1675, 1771
MaeI CTAG 6 cut(s) 222, 309, 780, 906, 1161, 1305
MaeII ACGT 2 cut(s) 995, 1972
MaeIII GTNAC 3 cut(s) 782, 1442, 1587
MalI GATC 4 cut(s) 282, 882, 1740, 1944
MbiI CCGCTC 1 cut(s) 650
MboI GATC 4 cut(s) 280, 880, 1738, 1942
MboII GAAGA 6 cut(s) 406, 565, 568, 935, 1790, 1828
MflI RGATCY 1 cut(s) 1942
MhlI GDGCHC 6 cut(s) 46, 89, 270, 413, 473, 1462
MlyI GAGTC 3 cut(s) 269, 356, 1159
MmeI TCCRAC 3 cut(s) 603, 783, 1920
Mph1103I ATGCAT 2 cut(s) 1552, 1582
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 5 cut(s) 510, 792, 1002, 1227, 1433
MslI CAYNNNNRTG 2 cut(s) 1932, 1988
MspA1I CMGCKG 2 cut(s) 662, 1141
MspCI CTTAAG 1 cut(s) 1226
MspI CCGG 3 cut(s) 257, 683, 1336
MspR9I CCNGG 2 cut(s) 683, 1911
Mva1269I GAATGC 1 cut(s) 1331
MvaI CCWGG 1 cut(s) 1911
NaeI GCCGGC 1 cut(s) 258
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 1625
NdeII GATC 4 cut(s) 280, 880, 1738, 1942
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 8 cut(s) 287, 374, 453, 790, 881, 1629, 1721, 1931
NmuCI GTSAC 2 cut(s) 782, 1442
NsiI ATGCAT 2 cut(s) 1552, 1582
OliI CACNNNNGTG 1 cut(s) 1988
PaeR7I CTCGAG 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PctI GAATGC 1 cut(s) 1331
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 5 cut(s) 404, 1205, 1598, 1677, 1722
PflMI CCANNNNNTGG 1 cut(s) 376
PleI GAGTC 3 cut(s) 269, 355, 1158
PpsI GAGTC 3 cut(s) 269, 355, 1158
PsiI TTATAA 1 cut(s) 894
Psp124BI GAGCTC 3 cut(s) 46, 270, 473
Psp6I CCWGG 1 cut(s) 1909
PspGI CCWGG 1 cut(s) 1909
PspXI VCTCGAGB 1 cut(s) 263
PsuI RGATCY 1 cut(s) 1942
PvuII CAGCTG 1 cut(s) 1141
RsaI GTAC 2 cut(s) 817, 1105
RsaNI GTAC 2 cut(s) 816, 1104
RseI CAYNNNNRTG 2 cut(s) 1932, 1988
SacI GAGCTC 3 cut(s) 46, 270, 473
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 5 cut(s) 510, 792, 1002, 1227, 1433
Sau3AI GATC 4 cut(s) 280, 880, 1738, 1942
SchI GAGTC 3 cut(s) 269, 356, 1159
ScrFI CCNGG 2 cut(s) 683, 1911
SduI GDGCHC 6 cut(s) 46, 89, 270, 413, 473, 1462
SfaNI GCATC 7 cut(s) 480, 1033, 1482, 1537, 1567, 1675, 1771
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 1932, 1988
SmlI CTYRAG 4 cut(s) 263, 269, 1226, 1619
SmoI CTYRAG 4 cut(s) 263, 269, 1226, 1619
SspI AATATT 1 cut(s) 1696
SspMI CTAG 6 cut(s) 222, 309, 780, 906, 1161, 1305
SstI GAGCTC 3 cut(s) 46, 270, 473
StyD4I CCNGG 2 cut(s) 681, 1909
StyI CCWWGG 1 cut(s) 1625
TaaI ACNGT 7 cut(s) 81, 1260, 1270, 1448, 1568, 1834, 1880
TaiI ACGT 2 cut(s) 998, 1975
TaqII GACCGA 1 cut(s) 1591
TatI WGTACW 1 cut(s) 815
TauI GCSGC 3 cut(s) 51, 54, 64
TfiI GAWTC 5 cut(s) 404, 1205, 1598, 1677, 1722
Tru1I TTAA 5 cut(s) 510, 792, 1002, 1227, 1433
Tru9I TTAA 5 cut(s) 510, 792, 1002, 1227, 1433
TscAI CASTG 5 cut(s) 840, 1265, 1451, 1573, 1885
TseFI GTSAC 2 cut(s) 782, 1442
TseI GCWGC 8 cut(s) 31, 181, 240, 659, 1138, 1511, 1976, 1994
Tsp45I GTSAC 2 cut(s) 782, 1442
TspDTI ATGAA 9 cut(s) 61, 540, 566, 972, 993, 1052, 1366, 1623, 1724
TspRI CASTG 5 cut(s) 840, 1265, 1451, 1573, 1885
Van91I CCANNNNNTGG 1 cut(s) 376
Vha464I CTTAAG 1 cut(s) 1226
XapI RAATTY 4 cut(s) 68, 527, 1373, 1891
XbaI TCTAGA 2 cut(s) 221, 1160
XhoI CTCGAG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 668
XspI CTAG 6 cut(s) 222, 309, 780, 906, 1161, 1305
Zsp2I ATGCAT 2 cut(s) 1552, 1582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.