Pentatricopeptide repeat-containing protein At3g02490
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02490 AT5G15980 |
| fragaria_vesca | FvH4_6g45820 |
| malus_domestica | MD09G1079500.v1.1 MD17G1069900.v1.1 |
| prunus_persica | Prupe.3G244800_v2.0.a1 |
| pyrus_communis | pycom09g00630 pycom17g07000 |
| rosa_chinensis | RchiOBHm_Chr2g0164021 |
| rosa_laevigata | RLG00000021433 |
| rosa_multiflora | Rmu_ssc0000432.1_g000010 |
| rosa_rugosa | Rorug02G0506300 |
| rosa_samantha | Rh2AG574400 Rh2BG585000 Rh2CG555900 Rh2DG594600 |
| rosa_wichuraiana | Rw2G047510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 885 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 367 |
| AccBSI | CCGCTC | 1 cut(s) | 641 |
| AccI | GTMKAC | 1 cut(s) | 659 |
| AccII | CGCG | 1 cut(s) | 1979 |
| AclWI | GGATC | 2 cut(s) | 1724, 1941 |
| AcsI | RAATTY | 4 cut(s) | 59, 518, 1364, 1882 |
| AcuI | CTGAAG | 1 cut(s) | 1808 |
| AfaI | GTAC | 2 cut(s) | 808, 1096 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 367, 409 |
| AflII | CTTAAG | 1 cut(s) | 1217 |
| AjiI | CACGTC | 1 cut(s) | 778 |
| AjnI | CCWGG | 1 cut(s) | 1900 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 596, 628 |
| AleI | CACNNNNGTG | 1 cut(s) | 1979 |
| Alw21I | GWGCWC | 5 cut(s) | 37, 80, 261, 464, 1453 |
| Alw26I | GTCTC | 3 cut(s) | 845, 977, 1227 |
| AlwI | GGATC | 2 cut(s) | 1724, 1941 |
| Ama87I | CYCGRG | 2 cut(s) | 254, 1610 |
| AoxI | GGCC | 1 cut(s) | 1560 |
| ApeKI | GCWGC | 9 cut(s) | 22, 172, 231, 650, 1129, 1502, 1606, 1967, 1985 |
| ApoI | RAATTY | 4 cut(s) | 59, 518, 1364, 1882 |
| AspLEI | GCGC | 2 cut(s) | 1070, 1395 |
| AspS9I | GGNCC | 1 cut(s) | 1560 |
| AsuC2I | CCSGG | 1 cut(s) | 674 |
| AsuHPI | GGTGA | 5 cut(s) | 29, 156, 461, 632, 1778 |
| AvaI | CYCGRG | 2 cut(s) | 254, 1610 |
| BanII | GRGCYC | 4 cut(s) | 37, 261, 404, 464 |
| Bbv12I | GWGCWC | 5 cut(s) | 37, 80, 261, 464, 1453 |
| BbvI | GCAGC | 9 cut(s) | 9, 159, 243, 662, 1141, 1489, 1618, 1954, 1972 |
| BccI | CCATC | 5 cut(s) | 602, 611, 838, 973, 1822 |
| BceAI | ACGGC | 1 cut(s) | 1880 |
| BciT130I | CCWGG | 1 cut(s) | 1902 |
| BclI | TGATCA | 1 cut(s) | 871 |
| BcnI | CCSGG | 1 cut(s) | 674 |
| BcoDI | GTCTC | 3 cut(s) | 845, 977, 1227 |
| BfaI | CTAG | 6 cut(s) | 213, 300, 771, 897, 1152, 1296 |
| BfrI | CTTAAG | 1 cut(s) | 1217 |
| Bme1390I | CCNGG | 2 cut(s) | 674, 1902 |
| BmeT110I | CYCGRG | 2 cut(s) | 254, 1610 |
| BmgBI | CACGTC | 1 cut(s) | 778 |
| BmgT120I | GGNCC | 1 cut(s) | 1560 |
| BmrFI | CCNGG | 2 cut(s) | 674, 1902 |
| BmsI | GCATC | 7 cut(s) | 471, 1024, 1473, 1528, 1558, 1666, 1762 |
| BpmI | CTGGAG | 2 cut(s) | 995, 1977 |
| BpuEI | CTTGAG | 1 cut(s) | 245 |
| BpuMI | CCSGG | 1 cut(s) | 674 |
| Bsa29I | ATCGAT | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 4 cut(s) | 672, 1616, 1900, 1977 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 367, 409 |
| Bse118I | RCCGGY | 1 cut(s) | 247 |
| Bse1I | ACTGG | 2 cut(s) | 859, 978 |
| Bse3DI | GCAATG | 3 cut(s) | 17, 1065, 1278 |
| BseBI | CCWGG | 1 cut(s) | 1902 |
| BseCI | ATCGAT | 1 cut(s) | 203 |
| BseDI | CCNNGG | 4 cut(s) | 672, 1616, 1900, 1977 |
| BseGI | GGATG | 8 cut(s) | 322, 613, 622, 736, 849, 1039, 1681, 1908 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 367, 409 |
| BseMI | GCAATG | 3 cut(s) | 17, 1065, 1278 |
| BseMII | CTCAG | 2 cut(s) | 95, 476 |
| BseNI | ACTGG | 2 cut(s) | 859, 978 |
| BseRI | GAGGAG | 4 cut(s) | 17, 430, 863, 970 |
| BseXI | GCAGC | 9 cut(s) | 9, 159, 243, 662, 1141, 1489, 1618, 1954, 1972 |
| BsgI | GTGCAG | 1 cut(s) | 596 |
| Bsh1236I | CGCG | 1 cut(s) | 1979 |
| BshFI | GGCC | 1 cut(s) | 1562 |
| BshVI | ATCGAT | 1 cut(s) | 203 |
| BsiHKAI | GWGCWC | 5 cut(s) | 37, 80, 261, 464, 1453 |
| BsiHKCI | CYCGRG | 2 cut(s) | 254, 1610 |
| BsiSI | CCGG | 3 cut(s) | 248, 674, 1327 |
| BslFI | GGGAC | 1 cut(s) | 211 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 367, 409 |
| BsmAI | GTCTC | 3 cut(s) | 845, 977, 1227 |
| BsmBI | CGTCTC | 1 cut(s) | 977 |
| BsmFI | GGGAC | 1 cut(s) | 211 |
| BsmI | GAATGC | 1 cut(s) | 1322 |
| BsnI | GGCC | 1 cut(s) | 1562 |
| BsoBI | CYCGRG | 2 cut(s) | 254, 1610 |
| Bsp1286I | GDGCHC | 6 cut(s) | 37, 80, 261, 404, 464, 1453 |
| Bsp143I | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| Bsp19I | CCATGG | 1 cut(s) | 1616 |
| BspANI | GGCC | 1 cut(s) | 1562 |
| BspCNI | CTCAG | 2 cut(s) | 94, 477 |
| BspDI | ATCGAT | 1 cut(s) | 203 |
| BspFNI | CGCG | 1 cut(s) | 1979 |
| BspPI | GGATC | 2 cut(s) | 1724, 1941 |
| BspTI | CTTAAG | 1 cut(s) | 1217 |
| BsrBI | CCGCTC | 1 cut(s) | 641 |
| BsrDI | GCAATG | 3 cut(s) | 17, 1065, 1278 |
| BsrFI | RCCGGY | 1 cut(s) | 247 |
| BsrI | ACTGG | 2 cut(s) | 859, 978 |
| BssAI | RCCGGY | 1 cut(s) | 247 |
| BssECI | CCNNGG | 4 cut(s) | 672, 1616, 1900, 1977 |
| BssMI | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| BssT1I | CCWWGG | 1 cut(s) | 1616 |
| Bst2UI | CCWGG | 1 cut(s) | 1902 |
| Bst4CI | ACNGT | 6 cut(s) | 72, 1251, 1261, 1439, 1825, 1871 |
| BstAFI | CTTAAG | 1 cut(s) | 1217 |
| BstC8I | GCNNGC | 4 cut(s) | 249, 816, 1066, 1342 |
| BstDEI | CTNAG | 6 cut(s) | 81, 113, 485, 803, 1331, 1989 |
| BstDSI | CCRYGG | 2 cut(s) | 1616, 1977 |
| BstF5I | GGATG | 8 cut(s) | 322, 613, 622, 736, 849, 1039, 1681, 1908 |
| BstFNI | CGCG | 1 cut(s) | 1979 |
| BstHHI | GCGC | 2 cut(s) | 1070, 1395 |
| BstKTI | GATC | 4 cut(s) | 274, 874, 1732, 1936 |
| BstMAI | GTCTC | 3 cut(s) | 845, 977, 1227 |
| BstMBI | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| BstNI | CCWGG | 1 cut(s) | 1902 |
| BstSCI | CCNGG | 2 cut(s) | 672, 1900 |
| BstUI | CGCG | 1 cut(s) | 1979 |
| BstV1I | GCAGC | 9 cut(s) | 9, 159, 243, 662, 1141, 1489, 1618, 1954, 1972 |
| BstX2I | RGATCY | 1 cut(s) | 1933 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1981 |
| BstYI | RGATCY | 1 cut(s) | 1933 |
| Bsu15I | ATCGAT | 1 cut(s) | 203 |
| BsuRI | GGCC | 1 cut(s) | 1562 |
| BsuTUI | ATCGAT | 1 cut(s) | 203 |
| BtgI | CCRYGG | 2 cut(s) | 1616, 1977 |
| BtgZI | GCGATG | 1 cut(s) | 1808 |
| BtrI | CACGTC | 1 cut(s) | 778 |
| BtsCI | GGATG | 8 cut(s) | 322, 613, 622, 736, 849, 1039, 1681, 1908 |
| BtsIMutI | CAGTG | 5 cut(s) | 138, 824, 1256, 1435, 1876 |
| Cac8I | GCNNGC | 4 cut(s) | 249, 816, 1066, 1342 |
| CfoI | GCGC | 2 cut(s) | 1070, 1395 |
| Cfr10I | RCCGGY | 1 cut(s) | 247 |
| Cfr13I | GGNCC | 1 cut(s) | 1560 |
| Cfr42I | CCGCGG | 1 cut(s) | 1980 |
| ClaI | ATCGAT | 1 cut(s) | 203 |
| Csp6I | GTAC | 2 cut(s) | 807, 1095 |
| CviAII | CATG | 7 cut(s) | 275, 362, 441, 869, 1617, 1709, 1919 |
| CviQI | GTAC | 2 cut(s) | 807, 1095 |
| DdeI | CTNAG | 6 cut(s) | 81, 113, 485, 803, 1331, 1989 |
| DpnI | GATC | 4 cut(s) | 273, 873, 1731, 1935 |
| DpnII | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| EciI | GGCGGA | 1 cut(s) | 39 |
| Ecl136II | GAGCTC | 3 cut(s) | 35, 259, 462 |
| Eco130I | CCWWGG | 1 cut(s) | 1616 |
| Eco24I | GRGCYC | 4 cut(s) | 37, 261, 404, 464 |
| Eco53kI | GAGCTC | 3 cut(s) | 35, 259, 462 |
| Eco57I | CTGAAG | 1 cut(s) | 1808 |
| Eco88I | CYCGRG | 2 cut(s) | 254, 1610 |
| EcoICRI | GAGCTC | 3 cut(s) | 35, 259, 462 |
| EcoRI | GAATTC | 2 cut(s) | 59, 1364 |
| EcoRII | CCWGG | 1 cut(s) | 1900 |
| EcoT14I | CCWWGG | 1 cut(s) | 1616 |
| EcoT22I | ATGCAT | 2 cut(s) | 1543, 1573 |
| EcoT38I | GRGCYC | 4 cut(s) | 37, 261, 404, 464 |
| ErhI | CCWWGG | 1 cut(s) | 1616 |
| Esp3I | CGTCTC | 1 cut(s) | 977 |
| FaeI | CATG | 7 cut(s) | 278, 365, 444, 872, 1620, 1712, 1922 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1272, 1304 |
| FaqI | GGGAC | 1 cut(s) | 211 |
| FatI | CATG | 7 cut(s) | 274, 361, 440, 868, 1616, 1708, 1918 |
| FauI | CCCGC | 2 cut(s) | 236, 646 |
| FbaI | TGATCA | 1 cut(s) | 871 |
| FblI | GTMKAC | 1 cut(s) | 659 |
| FokI | GGATG | 8 cut(s) | 329, 620, 629, 743, 856, 1046, 1688, 1895 |
| FriOI | GRGCYC | 4 cut(s) | 37, 261, 404, 464 |
| FspBI | CTAG | 6 cut(s) | 213, 300, 771, 897, 1152, 1296 |
| GlaI | GCGC | 2 cut(s) | 1069, 1394 |
| GsuI | CTGGAG | 2 cut(s) | 995, 1977 |
| HaeIII | GGCC | 1 cut(s) | 1562 |
| HapII | CCGG | 3 cut(s) | 248, 674, 1327 |
| HhaI | GCGC | 2 cut(s) | 1070, 1395 |
| Hin1II | CATG | 7 cut(s) | 278, 365, 444, 872, 1620, 1712, 1922 |
| Hin6I | GCGC | 2 cut(s) | 1068, 1393 |
| HinP1I | GCGC | 2 cut(s) | 1068, 1393 |
| HindIII | AAGCTT | 3 cut(s) | 158, 585, 1845 |
| HinfI | GANTC | 7 cut(s) | 266, 338, 395, 1196, 1589, 1668, 1713 |
| HpaII | CCGG | 3 cut(s) | 248, 674, 1327 |
| HphI | GGTGA | 5 cut(s) | 29, 156, 461, 632, 1778 |
| Hpy166II | GTNNAC | 5 cut(s) | 88, 660, 1042, 1286, 1307 |
| Hpy188I | TCNGA | 7 cut(s) | 32, 244, 271, 1227, 1402, 1468, 1683 |
| Hpy188III | TCNNGA | 7 cut(s) | 149, 213, 1152, 1454, 1758, 1786, 1956 |
| Hpy8I | GTNNAC | 5 cut(s) | 88, 660, 1042, 1286, 1307 |
| Hpy99I | CGWCG | 2 cut(s) | 76, 779 |
| HpyAV | CCTTC | 7 cut(s) | 370, 440, 598, 1024, 1089, 1274, 1783 |
| HpyCH4III | ACNGT | 6 cut(s) | 72, 1251, 1261, 1439, 1825, 1871 |
| HpyCH4IV | ACGT | 3 cut(s) | 777, 986, 1963 |
| HpyF3I | CTNAG | 6 cut(s) | 81, 113, 485, 803, 1331, 1989 |
| HpySE526I | ACGT | 3 cut(s) | 777, 986, 1963 |
| Hsp92II | CATG | 7 cut(s) | 278, 365, 444, 872, 1620, 1712, 1922 |
| HspAI | GCGC | 2 cut(s) | 1068, 1393 |
| KroI | GCCGGC | 1 cut(s) | 247 |
| KroNI | GCCGGC | 1 cut(s) | 249 |
| Ksp22I | TGATCA | 1 cut(s) | 871 |
| KspI | CCGCGG | 1 cut(s) | 1980 |
| Kzo9I | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| LmnI | GCTCC | 4 cut(s) | 30, 467, 957, 1975 |
| Lsp1109I | GCAGC | 9 cut(s) | 9, 159, 243, 662, 1141, 1489, 1618, 1954, 1972 |
| LweI | GCATC | 7 cut(s) | 471, 1024, 1473, 1528, 1558, 1666, 1762 |
| MaeI | CTAG | 6 cut(s) | 213, 300, 771, 897, 1152, 1296 |
| MaeII | ACGT | 3 cut(s) | 777, 986, 1963 |
| MaeIII | GTNAC | 2 cut(s) | 1433, 1578 |
| MalI | GATC | 4 cut(s) | 273, 873, 1731, 1935 |
| MbiI | CCGCTC | 1 cut(s) | 641 |
| MboI | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| MboII | GAAGA | 4 cut(s) | 556, 559, 926, 1781 |
| MflI | RGATCY | 1 cut(s) | 1933 |
| MhlI | GDGCHC | 6 cut(s) | 37, 80, 261, 404, 464, 1453 |
| MlyI | GAGTC | 2 cut(s) | 260, 347 |
| MmeI | TCCRAC | 3 cut(s) | 594, 774, 1911 |
| Mph1103I | ATGCAT | 2 cut(s) | 1543, 1573 |
| MroNI | GCCGGC | 1 cut(s) | 247 |
| MseI | TTAA | 5 cut(s) | 501, 783, 993, 1218, 1424 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1923, 1979 |
| MspA1I | CMGCKG | 3 cut(s) | 653, 1132, 1979 |
| MspCI | CTTAAG | 1 cut(s) | 1217 |
| MspI | CCGG | 3 cut(s) | 248, 674, 1327 |
| MspR9I | CCNGG | 2 cut(s) | 674, 1902 |
| Mva1269I | GAATGC | 1 cut(s) | 1322 |
| MvaI | CCWGG | 1 cut(s) | 1902 |
| MvnI | CGCG | 1 cut(s) | 1979 |
| NaeI | GCCGGC | 1 cut(s) | 249 |
| NciI | CCSGG | 1 cut(s) | 674 |
| NcoI | CCATGG | 1 cut(s) | 1616 |
| NdeII | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| NgoMIV | GCCGGC | 1 cut(s) | 247 |
| NlaIII | CATG | 7 cut(s) | 278, 365, 444, 872, 1620, 1712, 1922 |
| NmuCI | GTSAC | 1 cut(s) | 1433 |
| NsiI | ATGCAT | 2 cut(s) | 1543, 1573 |
| OliI | CACNNNNGTG | 1 cut(s) | 1979 |
| PaeR7I | CTCGAG | 2 cut(s) | 254, 1610 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 476 |
| PctI | GAATGC | 1 cut(s) | 1322 |
| PdiI | GCCGGC | 1 cut(s) | 249 |
| PfeI | GAWTC | 5 cut(s) | 395, 1196, 1589, 1668, 1713 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 367 |
| PleI | GAGTC | 2 cut(s) | 260, 346 |
| PpsI | GAGTC | 2 cut(s) | 260, 346 |
| PsiI | TTATAA | 1 cut(s) | 885 |
| Psp124BI | GAGCTC | 3 cut(s) | 37, 261, 464 |
| Psp6I | CCWGG | 1 cut(s) | 1900 |
| PspGI | CCWGG | 1 cut(s) | 1900 |
| PspPI | GGNCC | 1 cut(s) | 1560 |
| PspXI | VCTCGAGB | 2 cut(s) | 254, 1610 |
| PsuI | RGATCY | 1 cut(s) | 1933 |
| PvuII | CAGCTG | 1 cut(s) | 1132 |
| RsaI | GTAC | 2 cut(s) | 808, 1096 |
| RsaNI | GTAC | 2 cut(s) | 807, 1095 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1923, 1979 |
| SacI | GAGCTC | 3 cut(s) | 37, 261, 464 |
| SacII | CCGCGG | 1 cut(s) | 1980 |
| SaqAI | TTAA | 5 cut(s) | 501, 783, 993, 1218, 1424 |
| Sau3AI | GATC | 4 cut(s) | 271, 871, 1729, 1933 |
| Sau96I | GGNCC | 1 cut(s) | 1560 |
| SchI | GAGTC | 2 cut(s) | 260, 347 |
| ScrFI | CCNGG | 2 cut(s) | 674, 1902 |
| SduI | GDGCHC | 6 cut(s) | 37, 80, 261, 404, 464, 1453 |
| SfaNI | GCATC | 7 cut(s) | 471, 1024, 1473, 1528, 1558, 1666, 1762 |
| Sfr274I | CTCGAG | 2 cut(s) | 254, 1610 |
| Sfr303I | CCGCGG | 1 cut(s) | 1980 |
| SgrBI | CCGCGG | 1 cut(s) | 1980 |
| SlaI | CTCGAG | 2 cut(s) | 254, 1610 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1923, 1979 |
| SmlI | CTYRAG | 4 cut(s) | 254, 260, 1217, 1610 |
| SmoI | CTYRAG | 4 cut(s) | 254, 260, 1217, 1610 |
| SspI | AATATT | 1 cut(s) | 1687 |
| SspMI | CTAG | 6 cut(s) | 213, 300, 771, 897, 1152, 1296 |
| SstI | GAGCTC | 3 cut(s) | 37, 261, 464 |
| StyD4I | CCNGG | 2 cut(s) | 672, 1900 |
| StyI | CCWWGG | 1 cut(s) | 1616 |
| TaaI | ACNGT | 6 cut(s) | 72, 1251, 1261, 1439, 1825, 1871 |
| TaiI | ACGT | 3 cut(s) | 780, 989, 1966 |
| TaqII | GACCGA | 1 cut(s) | 1582 |
| TatI | WGTACW | 1 cut(s) | 806 |
| TauI | GCSGC | 2 cut(s) | 45, 55 |
| TfiI | GAWTC | 5 cut(s) | 395, 1196, 1589, 1668, 1713 |
| Tru1I | TTAA | 5 cut(s) | 501, 783, 993, 1218, 1424 |
| Tru9I | TTAA | 5 cut(s) | 501, 783, 993, 1218, 1424 |
| TscAI | CASTG | 5 cut(s) | 145, 831, 1256, 1442, 1876 |
| TseFI | GTSAC | 1 cut(s) | 1433 |
| TseI | GCWGC | 9 cut(s) | 22, 172, 231, 650, 1129, 1502, 1606, 1967, 1985 |
| Tsp45I | GTSAC | 1 cut(s) | 1433 |
| TspDTI | ATGAA | 9 cut(s) | 52, 531, 557, 963, 984, 1043, 1357, 1614, 1715 |
| TspRI | CASTG | 5 cut(s) | 145, 831, 1256, 1442, 1876 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 367 |
| Vha464I | CTTAAG | 1 cut(s) | 1217 |
| XapI | RAATTY | 4 cut(s) | 59, 518, 1364, 1882 |
| XbaI | TCTAGA | 2 cut(s) | 212, 1151 |
| XhoI | CTCGAG | 2 cut(s) | 254, 1610 |
| XmiI | GTMKAC | 1 cut(s) | 659 |
| XspI | CTAG | 6 cut(s) | 213, 300, 771, 897, 1152, 1296 |
| Zsp2I | ATGCAT | 2 cut(s) | 1543, 1573 |