AT5G20260

Exostosin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
6836781 .. 6839609
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20260.2

Sequence Viewer

Length: 1005 bp
ATGGAGAAGAAATTCAAAGTGTGGGTGTACAGAGAAGGAGAGACACCGTTAGTTCACATGGGTCCAATGAACAACATATACAGCATTGAAGGCCAATTCATGGACGAGATCGAGACAGGGATGAGCCCGTTCGCGGCTAACAACCCCGAAGAGGCTCATGCCTTTCTCCTCCCTGTCAGCGTCGCCAACATCGTTCATTACCTATACCGGCCGCTCGTGACCTACTCGAGGGAACAACTTCACAAAGTTTTTCTTGACTACGTCGATGTTGTGGCTCACAAGTATCCTTATTGGAACAGAAGCCTTGGAGCCGACCATTTCTACGTTTCTTGCCATGATTGGGCACCAGACGTCTCAGGATCGAACCCGGAGCTGATGAAAAACCTGATAAGAGTTCTCTGCAACGCCAACACATCAGAAGGTTTCATGCCCCAACGAGACGTCTCAATCCCGGAGATCAACATCCCCGGAGGCCACCTGGGACCACCTCGGTTATCGCGCTCTTCGGGCCATGACCGACCCATCCTTGCTTTCTTCGCAGGGGGTTCACACGGTTATATCCGCAGAATTCTATTGCAGCATTGGAAAGACAAAGATGAGGAGGTCCAAGTCCACGAGTACTTAGCCAAAAACAAAGACTACTTCAAGCTCATGGCTACGGCAAGGTTCTGTCTCTGTCCTAGTGGCTACGAAGTGGCTAGCCCTCGAGTCGTTGCAGCCATTAACTTAGGTTGCGTCCCTGTCATCATCTCTGATCACTACGCCTTGCCTTTCTCAGACGTTCTTGATTGGACTAAGTTCACCATTCATGTTCCTTCTAAGAAGATCCCTGAGATCAAAACCATACTAAAGAGCATATCCTGGAGACGCTACAGGGTGTTGCAGAGAAGGGTTTTGCAGGTCCAGAGACATTTCGTGATCAACAGACCGTCACAACCGTTTGATATGCTTAGAATGCTTCTTCACTCTGTTTGGTTGAGAAGACTAAACCTGAGGTTGCCTTAG

Protein Analysis

334

Amino Acids

38.68

Weight (kDa)

9.17

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 134 - 418 1.7e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20260 AT5G20260 AT5G20260
malus_domestica MD02G1022700.v1.1 MD15G1165400.v1.1
prunus_persica Prupe.7G249400_v2.0.a1
pyrus_communis pycom15g14810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 354, 444
Acc36I ACCTGC 1 cut(s) 889
AccB1I GGYRCC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 214
AccII CGCG 2 cut(s) 134, 499
AciI CCGC 3 cut(s) 134, 212, 562
AclWI GGATC 2 cut(s) 367, 820
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 2 cut(s) 11, 567
AcyI GRCGYC 2 cut(s) 351, 441
AfaI GTAC 2 cut(s) 29, 620
AfiI CCNNNNNNNGG 5 cut(s) 100, 133, 151, 228, 340
AgsI TTSAA 3 cut(s) 16, 89, 646
AjnI CCWGG 2 cut(s) 477, 860
AluBI AGCT 2 cut(s) 373, 649
AluI AGCT 2 cut(s) 373, 649
Alw26I GTCTC 8 cut(s) 35, 107, 358, 432, 448, 677, 859, 901
AlwI GGATC 2 cut(s) 367, 820
Ama87I CYCGRG 2 cut(s) 226, 705
AoxI GGCC 4 cut(s) 91, 209, 472, 508
ApeKI GCWGC 2 cut(s) 577, 716
ApoI RAATTY 2 cut(s) 11, 567
Asp700I GAANNNNTTC 2 cut(s) 11, 237
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 5 cut(s) 62, 482, 508, 604, 901
AsuC2I CCSGG 3 cut(s) 368, 452, 468
AsuHPI GGTGA 1 cut(s) 793
AsuNHI GCTAGC 1 cut(s) 698
AvaI CYCGRG 2 cut(s) 226, 705
AvaII GGWCC 4 cut(s) 62, 482, 604, 901
AxyI CCTNAGG 1 cut(s) 992
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 128
BauI CACGAG 2 cut(s) 215, 614
BbsI GAAGAC 1 cut(s) 988
BbvI GCAGC 2 cut(s) 589, 728
BccI CCATC 1 cut(s) 530
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 479, 862
BciVI GTATCC 1 cut(s) 294
BclI TGATCA 2 cut(s) 754, 918
BcnI CCSGG 3 cut(s) 368, 452, 468
BcoDI GTCTC 8 cut(s) 35, 107, 358, 432, 448, 677, 859, 901
BfaI CTAG 2 cut(s) 681, 699
BfmI CTRYAG 1 cut(s) 871
BfuAI ACCTGC 1 cut(s) 889
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 4 cut(s) 135, 212, 578, 717
BlsI GCNGC 4 cut(s) 136, 213, 579, 718
BmcAI AGTACT 1 cut(s) 620
Bme1390I CCNGG 5 cut(s) 368, 452, 468, 479, 862
Bme18I GGWCC 4 cut(s) 62, 482, 604, 901
BmeT110I CYCGRG 2 cut(s) 226, 705
BmgT120I GGNCC 5 cut(s) 62, 482, 508, 604, 901
BmiI GGNNCC 4 cut(s) 63, 310, 345, 483
BmrFI CCNGG 5 cut(s) 368, 452, 468, 479, 862
BmtI GCTAGC 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 988
BpmI CTGGAG 1 cut(s) 883
BpuMI CCSGG 3 cut(s) 368, 452, 468
BsaBI GATNNNNATC 1 cut(s) 461
BsaHI GRCGYC 2 cut(s) 351, 441
BsaJI CCNNGG 4 cut(s) 304, 466, 478, 488
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 133, 151, 228, 340
Bse118I RCCGGY 1 cut(s) 207
Bse21I CCTNAGG 1 cut(s) 992
Bse8I GATNNNNATC 1 cut(s) 461
BseBI CCWGG 2 cut(s) 479, 862
BseDI CCNNGG 4 cut(s) 304, 466, 478, 488
BseGI GGATG 3 cut(s) 126, 462, 522
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 5 cut(s) 100, 133, 151, 228, 340
BseMII CTCAG 4 cut(s) 369, 789, 822, 983
BseRI GAGGAG 2 cut(s) 158, 614
BseSI GKGCMC 1 cut(s) 346
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 2 cut(s) 589, 728
Bsh1236I CGCG 2 cut(s) 134, 499
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 4 cut(s) 93, 211, 474, 510
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 212
BsiHKCI CYCGRG 2 cut(s) 226, 705
BsiSI CCGG 4 cut(s) 208, 368, 452, 468
BslFI GGGAC 2 cut(s) 495, 722
BslI CCNNNNNNNGG 5 cut(s) 100, 133, 151, 228, 340
BsmAI GTCTC 8 cut(s) 35, 107, 358, 432, 448, 677, 859, 901
BsmBI CGTCTC 4 cut(s) 358, 432, 448, 859
BsmFI GGGAC 2 cut(s) 495, 722
BsmI GAATGC 1 cut(s) 960
BsnI GGCC 4 cut(s) 93, 211, 474, 510
BsoBI CYCGRG 2 cut(s) 226, 705
Bsp1286I GDGCHC 2 cut(s) 128, 346
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
BspACI CCGC 3 cut(s) 134, 212, 562
BspANI GGCC 4 cut(s) 93, 211, 474, 510
BspCNI CTCAG 4 cut(s) 368, 788, 823, 984
BspFNI CGCG 2 cut(s) 134, 499
BspLI GGNNCC 4 cut(s) 63, 310, 345, 483
BspMI ACCTGC 1 cut(s) 889
BspOI GCTAGC 1 cut(s) 702
BspPI GGATC 2 cut(s) 367, 820
BspQI GCTCTTC 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 4 cut(s) 304, 466, 478, 488
BssMI GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
BssNI GRCGYC 2 cut(s) 351, 441
BssSI CACGAG 2 cut(s) 215, 614
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 2 cut(s) 215, 614
Bst2UI CCWGG 2 cut(s) 479, 862
Bst4CI ACNGT 4 cut(s) 48, 554, 930, 939
Bst6I CTCTTC 2 cut(s) 144, 508
BstACI GRCGYC 2 cut(s) 351, 441
BstAUI TGTACA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 700
BstENI CCTNNNNNAGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 126, 462, 522
BstFNI CGCG 2 cut(s) 134, 499
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 7 cut(s) 111, 362, 459, 757, 828, 837, 921
BstMAI GTCTC 8 cut(s) 35, 107, 358, 432, 448, 677, 859, 901
BstMBI GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 4 cut(s) 90, 507, 536, 955
BstNI CCWGG 2 cut(s) 479, 862
BstSCI CCNGG 5 cut(s) 366, 450, 466, 477, 860
BstSFI CTRYAG 1 cut(s) 871
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 2 cut(s) 134, 499
BstV1I GCAGC 2 cut(s) 589, 728
BstV2I GAAGAC 1 cut(s) 988
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
BstZI CGGCCG 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 992
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 4 cut(s) 93, 211, 474, 510
BtsCI GGATG 3 cut(s) 126, 462, 522
BveI ACCTGC 1 cut(s) 889
Cac8I GCNNGC 1 cut(s) 700
CfoI GCGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 5 cut(s) 62, 482, 508, 604, 901
CseI GACGC 3 cut(s) 169, 724, 876
Csp6I GTAC 2 cut(s) 28, 619
CviAII CATG 8 cut(s) 58, 100, 158, 335, 427, 512, 652, 809
CviQI GTAC 2 cut(s) 28, 619
DpnI GATC 7 cut(s) 110, 361, 458, 756, 827, 836, 920
DpnII GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
EaeI YGGCCR 1 cut(s) 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 144, 508
EarI CTCTTC 2 cut(s) 144, 508
EclXI CGGCCG 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 4 cut(s) 62, 482, 604, 901
Eco52I CGGCCG 1 cut(s) 209
Eco81I CCTNAGG 1 cut(s) 992
Eco88I CYCGRG 2 cut(s) 226, 705
EcoNI CCTNNNNNAGG 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 2 cut(s) 477, 860
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 304
Esp3I CGTCTC 4 cut(s) 358, 432, 448, 859
FaeI CATG 8 cut(s) 61, 103, 161, 338, 430, 515, 655, 812
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 2 cut(s) 495, 722
FatI CATG 8 cut(s) 57, 99, 157, 334, 426, 511, 651, 808
FbaI TGATCA 2 cut(s) 754, 918
Fnu4HI GCNGC 4 cut(s) 135, 212, 578, 717
FokI GGATG 3 cut(s) 133, 449, 509
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 135, 212, 578, 717
FspBI CTAG 2 cut(s) 681, 699
GlaI GCGC 1 cut(s) 500
GluI GCNGC 4 cut(s) 135, 212, 578, 717
GsuI CTGGAG 1 cut(s) 883
HaeIII GGCC 4 cut(s) 93, 211, 474, 510
HapII CCGG 4 cut(s) 208, 368, 452, 468
HgaI GACGC 3 cut(s) 169, 724, 876
HhaI GCGC 1 cut(s) 501
Hin1I GRCGYC 2 cut(s) 351, 441
Hin1II CATG 8 cut(s) 61, 103, 161, 338, 430, 515, 655, 812
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HinfI GANTC 1 cut(s) 708
HpaII CCGG 4 cut(s) 208, 368, 452, 468
HphI GGTGA 1 cut(s) 793
Hpy166II GTNNAC 5 cut(s) 28, 55, 548, 613, 801
Hpy188I TCNGA 3 cut(s) 418, 754, 778
Hpy188III TCNNGA 7 cut(s) 112, 217, 254, 357, 785, 904, 916
Hpy8I GTNNAC 5 cut(s) 28, 55, 548, 613, 801
Hpy99I CGWCG 2 cut(s) 185, 266
HpyAV CCTTC 5 cut(s) 29, 83, 413, 825, 882
HpyCH4III ACNGT 4 cut(s) 48, 554, 930, 939
HpyCH4IV ACGT 5 cut(s) 261, 324, 351, 441, 780
HpyCH4V TGCA 5 cut(s) 402, 577, 716, 883, 898
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 507, 536, 955
HpySE526I ACGT 5 cut(s) 261, 324, 351, 441, 780
Hsp92I GRCGYC 2 cut(s) 351, 441
Hsp92II CATG 8 cut(s) 61, 103, 161, 338, 430, 515, 655, 812
HspAI GCGC 1 cut(s) 499
Ksp22I TGATCA 2 cut(s) 754, 918
Kzo9I GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
LguI GCTCTTC 1 cut(s) 508
LmnI GCTCC 2 cut(s) 308, 370
Lsp1109I GCAGC 2 cut(s) 589, 728
MaeI CTAG 2 cut(s) 681, 699
MaeII ACGT 5 cut(s) 261, 324, 351, 441, 780
MaeIII GTNAC 2 cut(s) 217, 930
MalI GATC 7 cut(s) 110, 361, 458, 756, 827, 836, 920
MbiI CCGCTC 1 cut(s) 214
MboI GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
MboII GAAGA 7 cut(s) 19, 161, 495, 526, 835, 953, 993
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 2 cut(s) 128, 346
MluCI AATT 3 cut(s) 11, 95, 567
MlyI GAGTC 1 cut(s) 717
MnlI CCTC 9 cut(s) 145, 179, 222, 464, 498, 592, 595, 714, 987
MroXI GAANNNNTTC 2 cut(s) 11, 237
MseI TTAA 1 cut(s) 723
MspI CCGG 4 cut(s) 208, 368, 452, 468
MspR9I CCNGG 5 cut(s) 368, 452, 468, 479, 862
Mva1269I GAATGC 1 cut(s) 960
MvaI CCWGG 2 cut(s) 479, 862
MvnI CGCG 2 cut(s) 134, 499
MwoI GCNNNNNNNGC 4 cut(s) 90, 507, 536, 955
NciI CCSGG 3 cut(s) 368, 452, 468
NdeII GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
NheI GCTAGC 1 cut(s) 698
NlaIII CATG 8 cut(s) 61, 103, 161, 338, 430, 515, 655, 812
NlaIV GGNNCC 4 cut(s) 63, 310, 345, 483
NmuCI GTSAC 2 cut(s) 217, 930
PaeR7I CTCGAG 2 cut(s) 226, 705
PciSI GCTCTTC 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 960
PdmI GAANNNNTTC 2 cut(s) 11, 237
PflFI GACNNNGTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 100
PfoI TCCNGGA 2 cut(s) 450, 860
PkrI GCNGC 4 cut(s) 136, 213, 579, 718
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 477, 860
PspGI CCWGG 2 cut(s) 477, 860
PspN4I GGNNCC 4 cut(s) 63, 310, 345, 483
PspPI GGNCC 5 cut(s) 62, 482, 508, 604, 901
PspXI VCTCGAGB 2 cut(s) 226, 705
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PsuI RGATCY 1 cut(s) 825
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 2 cut(s) 29, 620
RsaNI GTAC 2 cut(s) 28, 619
SapI GCTCTTC 1 cut(s) 508
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 4 cut(s) 135, 212, 578, 717
Sau3AI GATC 7 cut(s) 108, 359, 456, 754, 825, 834, 918
Sau96I GGNCC 5 cut(s) 62, 482, 508, 604, 901
ScaI AGTACT 1 cut(s) 620
SchI GAGTC 1 cut(s) 717
ScrFI CCNGG 5 cut(s) 368, 452, 468, 479, 862
SduI GDGCHC 2 cut(s) 128, 346
SfcI CTRYAG 1 cut(s) 871
Sfr274I CTCGAG 2 cut(s) 226, 705
SinI GGWCC 4 cut(s) 62, 482, 604, 901
SlaI CTCGAG 2 cut(s) 226, 705
SmlI CTYRAG 2 cut(s) 226, 705
SmoI CTYRAG 2 cut(s) 226, 705
Sse9I AATT 3 cut(s) 11, 95, 567
SsiI CCGC 3 cut(s) 134, 212, 562
SspMI CTAG 2 cut(s) 681, 699
StyD4I CCNGG 5 cut(s) 366, 450, 466, 477, 860
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 4 cut(s) 48, 554, 930, 939
TaiI ACGT 5 cut(s) 264, 327, 354, 444, 783
TaqI TCGA 5 cut(s) 111, 227, 264, 362, 706
TaqII GACCGA 1 cut(s) 531
TasI AATT 3 cut(s) 11, 95, 567
TatI WGTACW 2 cut(s) 27, 618
TauI GCSGC 2 cut(s) 137, 214
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TseFI GTSAC 2 cut(s) 217, 930
TseI GCWGC 2 cut(s) 577, 716
Tsp45I GTSAC 2 cut(s) 217, 930
TspDTI ATGAA 6 cut(s) 83, 88, 185, 392, 415, 797
Tth111I GACNNNGTC 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 4 cut(s) 62, 482, 604, 901
XagI CCTNNNNNAGG 1 cut(s) 226
XapI RAATTY 2 cut(s) 11, 567
XhoI CTCGAG 2 cut(s) 226, 705
XmnI GAANNNNTTC 2 cut(s) 11, 237
XspI CTAG 2 cut(s) 681, 699
ZraI GACGTC 2 cut(s) 352, 442
ZrmI AGTACT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.