Prupe.7G249400_v2.0.a1

glycosyltransferase At5g20260

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0019559
Physical Location & Seq
Reverse (-)
21137483 .. 21138688
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G249400.1

Sequence Viewer

Length: 1005 bp
ATGGAGGAAAGATTGAAGGTGTGGATTTACAGGGAAGGAGAGCCTCCCTTGGTCCACGACGGGCCGTTGAACAACATCTACGGCATCGAAGGGCAGTTCATCGACGAGATGGAGAGCGGCAAGAGCCGCTTCATGGCTCGTCATCCTGATGAGGCCAACCTGTTCCTCATCCCTATCAGTGTGGTCAACATTGTCAACACTCTTTACAATCCTCTTGTCACTTACTCCCGTGATCAGCTACAAAGGGTGGTTTTGGATTATATTGGCATTATATCTGAAAGATACCCTTACTGGAATAGAAGCCAAGGTGCTGACCATTTCTTAGTTTCTTGCCATGATTGGGCACCGGACATTTCAGAAGCGAACCCTAAGCTCTACGACAAGTTCATAAGAGTTTTATGCAATGCCAATACCTCGGAAGGGTTTAAGCCCCAAAGAGATGTCTCAATTCCAGAAATCAACATACCCTATGGAAAACTTGGTCCAACCCCACAGCGTGCAAGCCCTGATAAGCGTTCCATTCTCGCCTTCTTCGCTGGCGGTGCTCACGGTAACATAAGGCATATCTTGCTCGAGCATTGGAAAGACAAAGACAAAGAAGTGCAAGTGCATGAGTACCTTGACAAGAAGAAAAATTACTTCAAGTTAATGGGGAAGAGCAAGTTTTGCTTGTGCCCAAGTGGGTATGAAGTGGCAAGTCCAAGGGTGGTCACAGCAATTTCTGTGGGGTGTGTCCCTGTCCTCATTTCTGACTACTATGCATTGCCCTTTAGTGATGTTCTTGATTGGACCAAATTTTCCGTGTACATTCCATCAGAAAAAATACCAGAAATCAAGACAATTTTGAAAGGAATTTCCCCCAAAAGGTATTTGAAACTGCAAAAAAGGGTGACAGAGGTGCACAGGCATTTCATGATTCATCGACCAGCTCAACCTTATGATATGATCCACATGTTGCTTCACTCGGTTTGGCTGAGAAGGCTTGATGTTTTGCTGCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

335

Amino Acids

38.63

Weight (kDa)

8.76

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20260 AT5G20260 AT5G20260
malus_domestica MD02G1022700.v1.1 MD15G1165400.v1.1
prunus_persica Prupe.7G249400_v2.0.a1
pyrus_communis pycom15g14810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 3 cut(s) 117, 127, 540
AclWI GGATC 1 cut(s) 940
AcsI RAATTY 2 cut(s) 794, 852
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 2 cut(s) 617, 806
AfiI CCNNNNNNNGG 4 cut(s) 133, 340, 420, 864
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 5 cut(s) 16, 70, 643, 847, 874
AluBI AGCT 3 cut(s) 238, 373, 929
AluI AGCT 3 cut(s) 238, 373, 929
Alw21I GWGCWC 2 cut(s) 547, 903
Alw26I GTCTC 1 cut(s) 448
Alw44I GTGCAC 1 cut(s) 899
AlwI GGATC 1 cut(s) 940
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 2 cut(s) 62, 153
ApaLI GTGCAC 1 cut(s) 899
ApeKI GCWGC 1 cut(s) 994
ApoI RAATTY 2 cut(s) 794, 852
AspS9I GGNCC 4 cut(s) 52, 62, 482, 789
AsuHPI GGTGA 1 cut(s) 901
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 3 cut(s) 52, 482, 789
BaeGI GKGCMC 3 cut(s) 346, 677, 903
BanI GGYRCC 1 cut(s) 343
BarI GAAGNNNNNNTAC 2 cut(s) 620, 652
Bbv12I GWGCWC 2 cut(s) 547, 903
BbvI GCAGC 1 cut(s) 981
BccI CCATC 2 cut(s) 103, 820
BceAI ACGGC 2 cut(s) 49, 97
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 448
BisI GCNGC 3 cut(s) 118, 127, 995
BlsI GCNGC 3 cut(s) 119, 128, 996
Bme18I GGWCC 3 cut(s) 52, 482, 789
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 4 cut(s) 52, 62, 482, 789
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 369
BsaJI CCNNGG 4 cut(s) 48, 304, 414, 701
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 340, 420, 864
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 409, 761
BseDI CCNNGG 4 cut(s) 48, 304, 414, 701
BseGI GGATG 2 cut(s) 142, 168
BseLI CCNNNNNNNGG 4 cut(s) 133, 340, 420, 864
BseMI GCAATG 2 cut(s) 409, 761
BseMII CTCAG 1 cut(s) 965
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 3 cut(s) 346, 677, 903
BseXI GCAGC 1 cut(s) 981
BshFI GGCC 2 cut(s) 64, 155
BshNI GGYRCC 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 547, 903
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 4 cut(s) 133, 340, 420, 864
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 2 cut(s) 64, 155
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 4 cut(s) 346, 547, 677, 903
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 2 cut(s) 232, 945
BspACI CCGC 3 cut(s) 117, 127, 540
BspANI GGCC 2 cut(s) 64, 155
BspCNI CTCAG 1 cut(s) 966
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 1 cut(s) 940
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 2 cut(s) 409, 761
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 48, 304, 414, 701
BssMI GATC 2 cut(s) 232, 945
BssT1I CCWWGG 3 cut(s) 48, 304, 701
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 650
BstAPI GCANNNNNTGC 2 cut(s) 568, 666
BstAUI TGTACA 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 498, 502, 538
BstDEI CTNAG 3 cut(s) 322, 369, 974
BstF5I GGATG 2 cut(s) 142, 168
BstKTI GATC 2 cut(s) 235, 948
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 2 cut(s) 232, 945
BstMWI GCNNNNNNNGC 7 cut(s) 123, 126, 533, 542, 568, 666, 979
BstNSI RCATGY 1 cut(s) 955
BstSLI GKGCMC 3 cut(s) 346, 677, 903
BstV1I GCAGC 1 cut(s) 981
BsuRI GGCC 2 cut(s) 64, 155
BtsCI GGATG 2 cut(s) 142, 168
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 498, 502, 538
CciI TCATGA 1 cut(s) 912
Cfr13I GGNCC 4 cut(s) 52, 62, 482, 789
Csp6I GTAC 2 cut(s) 616, 805
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 5 cut(s) 133, 335, 611, 913, 952
CviQI GTAC 2 cut(s) 616, 805
DdeI CTNAG 3 cut(s) 322, 369, 974
DpnI GATC 2 cut(s) 234, 947
DpnII GATC 2 cut(s) 232, 945
DraIII CACNNNGTG 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Eco130I CCWWGG 3 cut(s) 48, 304, 701
Eco47I GGWCC 3 cut(s) 52, 482, 789
Eco88I CYCGRG 1 cut(s) 572
EcoT14I CCWWGG 3 cut(s) 48, 304, 701
EcoT22I ATGCAT 1 cut(s) 763
ErhI CCWWGG 3 cut(s) 48, 304, 701
FaeI CATG 5 cut(s) 136, 338, 614, 916, 955
FalI AAGNNNNNCTT 6 cut(s) 113, 145, 271, 303, 653, 685
FaqI GGGAC 1 cut(s) 719
FatI CATG 5 cut(s) 132, 334, 610, 912, 951
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 118, 127, 995
FokI GGATG 2 cut(s) 129, 155
Fsp4HI GCNGC 3 cut(s) 118, 127, 995
GluI GCNGC 3 cut(s) 118, 127, 995
HaeIII GGCC 2 cut(s) 64, 155
HapII CCGG 1 cut(s) 347
Hin1II CATG 5 cut(s) 136, 338, 614, 916, 955
HincII GTYRAC 2 cut(s) 187, 196
HindII GTYRAC 2 cut(s) 187, 196
HinfI GANTC 1 cut(s) 916
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 901
Hpy166II GTNNAC 5 cut(s) 55, 187, 196, 805, 901
Hpy188I TCNGA 5 cut(s) 277, 358, 418, 751, 817
Hpy188III TCNNGA 6 cut(s) 146, 452, 782, 835, 913, 1002
Hpy8I GTNNAC 5 cut(s) 55, 187, 196, 805, 901
Hpy99I CGWCG 2 cut(s) 62, 107
HpyAV CCTTC 6 cut(s) 10, 29, 83, 413, 538, 972
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4V TGCA 7 cut(s) 402, 500, 604, 610, 761, 880, 901
HpyF10VI GCNNNNNNNGC 7 cut(s) 123, 126, 533, 542, 568, 666, 979
HpyF3I CTNAG 3 cut(s) 322, 369, 974
Hsp92II CATG 5 cut(s) 136, 338, 614, 916, 955
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 232, 945
LguI GCTCTTC 1 cut(s) 650
Lsp1109I GCAGC 1 cut(s) 981
LweI GCATC 1 cut(s) 93
MaeIII GTNAC 4 cut(s) 217, 551, 709, 889
MalI GATC 2 cut(s) 234, 947
MbiI CCGCTC 1 cut(s) 117
MboI GATC 2 cut(s) 232, 945
MboII GAAGA 3 cut(s) 523, 640, 667
MhlI GDGCHC 4 cut(s) 346, 547, 677, 903
MluCI AATT 6 cut(s) 447, 634, 717, 794, 840, 852
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 7 cut(s) 54, 145, 176, 222, 424, 752, 889
Mph1103I ATGCAT 1 cut(s) 763
MseI TTAA 2 cut(s) 426, 647
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 1 cut(s) 347
MwoI GCNNNNNNNGC 7 cut(s) 123, 126, 533, 542, 568, 666, 979
NdeII GATC 2 cut(s) 232, 945
NlaIII CATG 5 cut(s) 136, 338, 614, 916, 955
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 3 cut(s) 217, 709, 889
NsiI ATGCAT 1 cut(s) 763
NspI RCATGY 1 cut(s) 955
PaeR7I CTCGAG 1 cut(s) 572
PagI TCATGA 1 cut(s) 912
PciI ACATGT 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 916
PkrI GCNGC 3 cut(s) 119, 128, 996
PscI ACATGT 1 cut(s) 951
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 4 cut(s) 52, 62, 482, 789
PspXI VCTCGAGB 1 cut(s) 572
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
RsaI GTAC 2 cut(s) 617, 806
RsaNI GTAC 2 cut(s) 616, 805
RseI CAYNNNNRTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 426, 647
SatI GCNGC 3 cut(s) 118, 127, 995
Sau3AI GATC 2 cut(s) 232, 945
Sau96I GGNCC 4 cut(s) 52, 62, 482, 789
SduI GDGCHC 4 cut(s) 346, 547, 677, 903
SfaNI GCATC 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 572
SinI GGWCC 3 cut(s) 52, 482, 789
SlaI CTCGAG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 6 cut(s) 447, 634, 717, 794, 840, 852
SsiI CCGC 3 cut(s) 117, 127, 540
StyI CCWWGG 3 cut(s) 48, 304, 701
TaaI ACNGT 1 cut(s) 551
TaqI TCGA 4 cut(s) 87, 102, 573, 922
TasI AATT 6 cut(s) 447, 634, 717, 794, 840, 852
TatI WGTACW 1 cut(s) 804
TauI GCSGC 2 cut(s) 120, 129
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 2 cut(s) 426, 647
Tru9I TTAA 2 cut(s) 426, 647
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 3 cut(s) 217, 709, 889
TseI GCWGC 1 cut(s) 994
Tsp45I GTSAC 3 cut(s) 217, 709, 889
TspDTI ATGAA 6 cut(s) 88, 121, 376, 702, 901, 908
TspGWI ACGGA 1 cut(s) 790
TspRI CASTG 1 cut(s) 184
VneI GTGCAC 1 cut(s) 899
VpaK11BI GGWCC 3 cut(s) 52, 482, 789
XapI RAATTY 2 cut(s) 794, 852
XceI RCATGY 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.