AT5G26594

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013420
Physical Location & Seq
Forward (+)
9269282 .. 9270254
973 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26594.1

Sequence Viewer

Length: 420 bp
ATGACGAGAGATCAAGTAGCTGAAGAACTTCCAAATTTGGCAGAGTCGAAGTTAACAGCTTTGGTCGTCGATGACAGTTTCGTAAACCAAACTATACATCAGAAGCTGTTGAATCGTCTAGGGATTAAAAACGACGTCGTCACAAACGGAAAAGAAGCCGTCGACGTTTATTGTTCCGGCGGTAACTATGATCTTATTCTTATGGACATGGACATGCCCATCATGAACGGTATTCAGGCAACAAAGAGACTAAGGGAGATGGGAATAGAGAGCAAGATAGCAGGAGTAACAACACGAGCTAACGAAGGAGAGAAGAAAGAGTTTATGGAAGCTGGCCTTAATGATTTTCAAGAGAAACCTCTTACCATCTCTAAGCTTCTCTCTATTCTTCATAAACTTAATTTCTACGTCCAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

5.2

Isoelectric Point (pI)

21.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 21 - 130 3.6e-22 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26594
fragaria_vesca FvH4_2g19810
malus_domestica MD05G1182700.v1.1 MD10G1170800.v1.1
prunus_persica Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1
pyrus_communis pycom05g16780
rosa_chinensis RchiOBHm_Chr6g0285521
rosa_laevigata RLG00000012631
rosa_multiflora Rmu_sc0012495.1_g000005
rosa_roxburghii Rroxscaffold_7G00183060
rosa_rugosa Rorug06G0175100
rosa_samantha Rh6AG286700 Rh6BG287900 Rh6CG289100 Rh6DG281900
rosa_wichuraiana Rw6G024640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 135
AgsI TTSAA 2 cut(s) 112, 350
AluBI AGCT 6 cut(s) 20, 59, 106, 299, 332, 376
AluI AGCT 6 cut(s) 20, 59, 106, 299, 332, 376
Alw26I GTCTC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 27
BauI CACGAG 1 cut(s) 294
BccI CCATC 3 cut(s) 227, 253, 374
BceAI ACGGC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 135
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 241
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 10, 190
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 336
BspHI TCATGA 1 cut(s) 222
BssMI GATC 2 cut(s) 10, 190
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 77, 230
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 251, 372
BstKTI GATC 2 cut(s) 13, 193
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 2 cut(s) 10, 190
BstNSI RCATGY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 106
CciI TCATGA 1 cut(s) 222
CviAII CATG 3 cut(s) 208, 214, 223
CviJI RGCY 8 cut(s) 20, 59, 106, 158, 299, 332, 336, 376
CviKI_1 RGCY 8 cut(s) 20, 59, 106, 158, 299, 332, 336, 376
DdeI CTNAG 2 cut(s) 251, 372
DpnI GATC 2 cut(s) 12, 192
DpnII GATC 2 cut(s) 10, 190
Eco57I CTGAAG 1 cut(s) 42
FaeI CATG 3 cut(s) 211, 217, 226
FaiI YATR 8 cut(s) 95, 189, 203, 209, 215, 224, 326, 393
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 3 cut(s) 207, 213, 222
FblI GTMKAC 1 cut(s) 162
FspBI CTAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 3 cut(s) 211, 217, 226
HincII GTYRAC 2 cut(s) 54, 163
HindII GTYRAC 2 cut(s) 54, 163
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 2 cut(s) 44, 112
HpaI GTTAAC 1 cut(s) 54
HpaII CCGG 1 cut(s) 177
Hpy166II GTNNAC 3 cut(s) 54, 85, 163
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 223, 350
Hpy8I GTNNAC 3 cut(s) 54, 85, 163
Hpy99I CGWCG 5 cut(s) 71, 137, 140, 164, 167
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 77, 230
HpyCH4IV ACGT 3 cut(s) 135, 165, 408
HpyF3I CTNAG 2 cut(s) 251, 372
HpySE526I ACGT 3 cut(s) 135, 165, 408
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 3 cut(s) 211, 217, 226
KspAI GTTAAC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 10, 190
LpnPI CCDG 4 cut(s) 190, 221, 267, 318
MaeI CTAG 1 cut(s) 119
MaeII ACGT 3 cut(s) 135, 165, 408
MaeIII GTNAC 3 cut(s) 139, 182, 286
MalI GATC 2 cut(s) 12, 192
MboI GATC 2 cut(s) 10, 190
MboII GAAGA 3 cut(s) 35, 325, 380
MluCI AATT 2 cut(s) 34, 400
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 4 cut(s) 53, 126, 339, 399
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 177
NdeII GATC 2 cut(s) 10, 190
NlaIII CATG 3 cut(s) 211, 217, 226
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 1 cut(s) 217
PagI TCATGA 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 112
PflFI GACNNNGTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 212
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 4 cut(s) 53, 126, 339, 399
Sau3AI GATC 2 cut(s) 10, 190
SchI GAGTC 1 cut(s) 53
SgrDI CGTCGACG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 2 cut(s) 34, 400
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 77, 230
TaiI ACGT 3 cut(s) 138, 168, 411
TaqI TCGA 3 cut(s) 47, 69, 162
TasI AATT 2 cut(s) 34, 400
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 4 cut(s) 53, 126, 339, 399
Tru9I TTAA 4 cut(s) 53, 126, 339, 399
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 239, 380
TspGWI ACGGA 1 cut(s) 162
Tth111I GACNNNGTC 1 cut(s) 137
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 119
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.