Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013420

Physical Location & Seq

Genomic Coordinates Reverse (-)

19438111 .. 19439398

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G209300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTGAAGAACACAAAGGCAGCAACCAAGATAACCGCGCTTGTTGTAGACGATAGCATGATCAACCAAAGAATTCACCACAAACTGTTGGAAAATCTTGGCATAGAAAACCAAGTTGTGGGGAATGGGAAAGAAGCCGTTGATGTCCACTGCTCTGGAAAACACTTTGACCTTATTCTCATGGACATGGACATGCCTATCATGAATGGCATTGAGGCAACAAGAACACTGCGGGCAATGGGAATTCAGAGCACAATCGCAGGCGTTTCGTCACACTCATCCCTCAGTGAAGACACACAAGAATTTATAGAGGCAGGCTTAGATGACTACCAAGAGAAACCATTAACCCCTGATAAGCTAGTTGCCATCCTCCATAAGGTTAATCTCCATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0080090 GO:0101006 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Response_reg

Protein Analysis

132

Amino Acids

14.42

Weight (kDa)

5.55

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26594
fragaria_vesca	FvH4_2g19810
malus_domestica	MD05G1182700.v1.1 MD10G1170800.v1.1
prunus_persica	Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1
pyrus_communis	pycom05g16780
rosa_chinensis	RchiOBHm_Chr6g0285521
rosa_laevigata	RLG00000012631
rosa_multiflora	Rmu_sc0012495.1_g000005
rosa_roxburghii	Rroxscaffold_7G00183060
rosa_rugosa	Rorug06G0175100
rosa_samantha	Rh6AG286700 Rh6BG287900 Rh6CG289100 Rh6DG281900
rosa_wichuraiana	Rw6G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	36, 232
AcsI	RAATTY	3 cut(s)	72, 243, 302
AfiI	CCNNNNNNNGG	2 cut(s)	118, 376
AgsI	TTSAA	1 cut(s)	7
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	3 cut(s)	72, 243, 302
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BclI	TGATCA	1 cut(s)	60
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 376
Bse3DI	GCAATG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	278, 366
BseLI	CCNNNNNNNGG	2 cut(s)	118, 376
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	118, 376
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	2 cut(s)	36, 232
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	243
BssMI	GATC	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	234, 262, 316
BstDEI	CTNAG	2 cut(s)	284, 319
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	278, 366
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	196
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	278, 366
BtsI	GCAGTG	2 cut(s)	148, 227
BtsIMutI	CAGTG	3 cut(s)	148, 227, 292
Cac8I	GCNNGC	3 cut(s)	234, 262, 316
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	40
CviAII	CATG	6 cut(s)	58, 181, 187, 193, 202, 389
CviJI	RGCY	3 cut(s)	137, 318, 358
CviKI_1	RGCY	3 cut(s)	137, 318, 358
DdeI	CTNAG	2 cut(s)	284, 319
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRI	GAATTC	2 cut(s)	72, 243
FaeI	CATG	6 cut(s)	61, 184, 190, 196, 205, 392
FaiI	YATR	9 cut(s)	59, 104, 182, 188, 194, 203, 308, 375, 390
FatI	CATG	6 cut(s)	57, 180, 186, 192, 201, 388
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	2 cut(s)	265, 353
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	6 cut(s)	61, 184, 190, 196, 205, 392
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	49, 148
Hpy188I	TCNGA	2 cut(s)	249, 395
Hpy188III	TCNNGA	2 cut(s)	156, 202
Hpy8I	GTNNAC	2 cut(s)	49, 148
HpyCH4III	ACNGT	1 cut(s)	87
HpyF3I	CTNAG	2 cut(s)	284, 319
Hsp92II	CATG	6 cut(s)	61, 184, 190, 196, 205, 392
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	141, 246, 300, 363
Lsp1109I	GCAGC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	2 cut(s)	19, 302
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	3 cut(s)	72, 243, 302
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	208, 293, 304, 380
MseI	TTAA	2 cut(s)	344, 381
MslI	CAYNNNNRTG	2 cut(s)	185, 191
MvnI	CGCG	1 cut(s)	38
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	6 cut(s)	61, 184, 190, 196, 205, 392
NmuCI	GTSAC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	196
PagI	TCATGA	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	22
RseI	CAYNNNNRTG	2 cut(s)	185, 191
SaqAI	TTAA	2 cut(s)	344, 381
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	3 cut(s)	174, 360, 381
SmiMI	CAYNNNNRTG	2 cut(s)	185, 191
Sse9I	AATT	3 cut(s)	72, 243, 302
SsiI	CCGC	2 cut(s)	36, 232
SspMI	CTAG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	87
TasI	AATT	3 cut(s)	72, 243, 302
Tru1I	TTAA	2 cut(s)	344, 381
Tru9I	TTAA	2 cut(s)	344, 381
TscAI	CASTG	3 cut(s)	155, 234, 292
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	155, 234, 292
Van91I	CCANNNNNTGG	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	72, 243, 302
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.