Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012495.1

Orthogroup ID

OG0013420

Physical Location & Seq

Genomic Coordinates Forward (+)

34270 .. 34775

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012495.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgttgaagagcacaaatgcaaatgaggctgcagccaagataacagctctcgtcgtagatgacagcaggatcaaccaaagtattcaccgcaagctcttggataatcttggcattgaaaaccaagtcgcaggtaacggaaaagaagctgttgatgtccactgctctggcaaacagtttgatcttatactgatggacatggacatgcctatcatgaatggcattgaggccaccaggacactgcgtgcaatggggattcgaagtacaattgctggtgtatcatcacatgctcacaacgaaaatatacaagagtttgtgaatgcaggactagatgactaccaagagaagcccttaactatttctaagctaatttccatcctccaaaaggtgaatatcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0080090 GO:0101006 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Response_reg

Protein Analysis

132

Amino Acids

14.43

Weight (kDa)

5.74

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26594
fragaria_vesca	FvH4_2g19810
malus_domestica	MD05G1182700.v1.1 MD10G1170800.v1.1
prunus_persica	Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1
pyrus_communis	pycom05g16780
rosa_chinensis	RchiOBHm_Chr6g0285521
rosa_laevigata	RLG00000012631
rosa_multiflora	Rmu_sc0012495.1_g000005
rosa_roxburghii	Rroxscaffold_7G00183060
rosa_rugosa	Rorug06G0175100
rosa_samantha	Rh6AG286700 Rh6BG287900 Rh6CG289100 Rh6DG281900
rosa_wichuraiana	Rw6G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	7, 116
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	4 cut(s)	47, 94, 146, 364
AluI	AGCT	4 cut(s)	47, 94, 146, 364
Alw21I	GWGCWC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	29, 32
AsuHPI	GGTGA	2 cut(s)	77, 397
AsuII	TTCGAA	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	16, 44
BccI	CCATC	2 cut(s)	184, 380
BciT130I	CCWGG	1 cut(s)	232
BfaI	CTAG	2 cut(s)	326, 397
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	30, 33
BlsI	GCNGC	2 cut(s)	31, 34
Bme1390I	CCNGG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	16, 44
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	69, 178
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	252
BssMI	GATC	2 cut(s)	69, 178
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	2
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	92, 243
BstDEI	CTNAG	1 cut(s)	360
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	2 cut(s)	72, 181
BstMBI	GATC	2 cut(s)	69, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	2 cut(s)	205, 287
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	16, 44
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	2 cut(s)	157, 236
BtsIMutI	CAGTG	2 cut(s)	157, 236
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	92, 243
CciI	TCATGA	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	4 cut(s)	196, 202, 211, 284
CviJI	RGCY	8 cut(s)	29, 35, 47, 94, 146, 227, 346, 364
CviKI_1	RGCY	8 cut(s)	29, 35, 47, 94, 146, 227, 346, 364
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	71, 180
DpnII	GATC	2 cut(s)	69, 178
DraIII	CACNNNGTG	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	230
FaeI	CATG	4 cut(s)	199, 205, 214, 287
FaiI	YATR	6 cut(s)	185, 197, 203, 212, 285, 302
FatI	CATG	4 cut(s)	195, 201, 210, 283
Fnu4HI	GCNGC	2 cut(s)	30, 33
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	2 cut(s)	30, 33
FspBI	CTAG	2 cut(s)	326, 397
GluI	GCNGC	2 cut(s)	30, 33
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	4 cut(s)	199, 205, 214, 287
HinfI	GANTC	1 cut(s)	253
HphI	GGTGA	2 cut(s)	77, 397
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	20, 32, 245, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	199, 205, 214, 287
Kzo9I	GATC	2 cut(s)	69, 178
LguI	GCTCTTC	1 cut(s)	2
LpnPI	CCDG	7 cut(s)	52, 114, 150, 217, 244, 255, 306
Lsp1109I	GCAGC	2 cut(s)	16, 44
MaeI	CTAG	2 cut(s)	326, 397
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	71, 180
MboI	GATC	2 cut(s)	69, 178
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	2 cut(s)	264, 366
MnlI	CCTC	3 cut(s)	19, 217, 386
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	2 cut(s)	69, 178
NlaIII	CATG	4 cut(s)	199, 205, 214, 287
NspI	RCATGY	2 cut(s)	205, 287
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	2
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	31, 34
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	30, 33
Sau3AI	GATC	2 cut(s)	69, 178
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	6 cut(s)	49, 96, 133, 148, 366, 387
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	264, 366
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	2 cut(s)	326, 397
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	256
TasI	AATT	2 cut(s)	264, 366
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	164, 243
TseI	GCWGC	2 cut(s)	29, 32
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	164, 243
XagI	CCTNNNNNAGG	1 cut(s)	380
XceI	RCATGY	2 cut(s)	205, 287
XspI	CTAG	2 cut(s)	326, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.