Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013420

Physical Location & Seq

Genomic Coordinates Reverse (-)

31127782 .. 31129222

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1182700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTGAAGAGCAAAAATGCAACCACGAAGATGATGGCGCTTGTTGTAGACGATAACATAGTCAACCAAAGAATTCACCACAAACTACTGGAAAACTTTGGCATAGAAAACCAGGTTGTAGGGAACGGGAAAGAAGCCATTGATGTCCACTGCTCTGGGAAACATTTTGACCTTATTCTCATGGACATGGACATGCCTGTCATGAATGGCATTGAGGCAACGAGGATGCTGCGTGCGATGGGAATTCGAAGTACGATTGCAGGTGTTTCGTCGCATTCGTCTCTCAGTGAAGACACGCGAGAATTTATAGAGGCAGGCTTAGATGATTACCAAGAGAAACCATTAACTCCTGCTAAGCTAGTTTCCATCCTCCATAAGGTTAATCTCCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0080090 GO:0101006 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Response_reg

Protein Analysis

132

Amino Acids

14.57

Weight (kDa)

6.13

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	14 - 124	2.1e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26594
fragaria_vesca	FvH4_2g19810
malus_domestica	MD05G1182700.v1.1 MD10G1170800.v1.1
prunus_persica	Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1 Prupe.8G209300_v2.0.a1
pyrus_communis	pycom05g16780
rosa_chinensis	RchiOBHm_Chr6g0285521
rosa_laevigata	RLG00000012631
rosa_multiflora	Rmu_sc0012495.1_g000005
rosa_roxburghii	Rroxscaffold_7G00183060
rosa_rugosa	Rorug06G0175100
rosa_samantha	Rh6AG286700 Rh6BG287900 Rh6CG289100 Rh6DG281900
rosa_wichuraiana	Rw6G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	251
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	298
AcsI	RAATTY	3 cut(s)	72, 243, 302
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	72, 243, 302
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	3 cut(s)	28, 232, 374
BcgI	CGANNNNNNTGC	4 cut(s)	211, 245, 249, 283
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	251
BisI	GCNGC	1 cut(s)	230
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	231, 366
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	285
BsmBI	CGTCTC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1720I	GCTNAGC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	2
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	234, 316
BstDEI	CTNAG	3 cut(s)	284, 319, 354
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	231, 366
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	231, 366
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 292
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	234, 316
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	5 cut(s)	181, 187, 193, 202, 389
CviJI	RGCY	3 cut(s)	137, 318, 358
CviKI_1	RGCY	3 cut(s)	137, 318, 358
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	3 cut(s)	284, 319, 354
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRI	GAATTC	2 cut(s)	72, 243
EcoRII	CCWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	5 cut(s)	184, 190, 196, 205, 392
FaiI	YATR	9 cut(s)	59, 104, 182, 188, 194, 203, 308, 375, 390
FatI	CATG	5 cut(s)	180, 186, 192, 201, 388
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	238, 353
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	41
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	5 cut(s)	184, 190, 196, 205, 392
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	49, 64, 148
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	3 cut(s)	49, 64, 148
Hpy99I	CGWCG	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	20, 260
HpyF3I	CTNAG	3 cut(s)	284, 319, 354
Hsp92II	CATG	5 cut(s)	184, 190, 196, 205, 392
HspAI	GCGC	1 cut(s)	38
LguI	GCTCTTC	1 cut(s)	2
LpnPI	CCDG	8 cut(s)	74, 98, 125, 141, 210, 246, 300, 363
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	216
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	1 cut(s)	359
MboII	GAAGA	3 cut(s)	19, 40, 302
MluCI	AATT	3 cut(s)	72, 243, 302
MnlI	CCTC	4 cut(s)	208, 216, 304, 380
MseI	TTAA	2 cut(s)	344, 381
MslI	CAYNNNNRTG	3 cut(s)	29, 185, 191
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	298
NlaIII	CATG	5 cut(s)	184, 190, 196, 205, 392
NspI	RCATGY	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	247
PagI	TCATGA	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	2
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PctI	GAATGC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	3 cut(s)	29, 185, 191
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	2 cut(s)	344, 381
SatI	GCNGC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	5 cut(s)	117, 174, 265, 360, 381
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	247
SmiMI	CAYNNNNRTG	3 cut(s)	29, 185, 191
Sse9I	AATT	3 cut(s)	72, 243, 302
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	111
TaqI	TCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	72, 243, 302
Tru1I	TTAA	2 cut(s)	344, 381
Tru9I	TTAA	2 cut(s)	344, 381
TscAI	CASTG	2 cut(s)	155, 292
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	155, 292
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	72, 243, 302
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.