AT5G26790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0020204
Physical Location & Seq
Forward (+)
9422879 .. 9423699
821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26790.1

Sequence Viewer

Length: 207 bp
ATGCCGTCATCTATCCGCTGGTGGTGGCCGATCCATTTCACTTCATCTGGATCTGTACCAAGGTGGCTGAGTTGGCGTCGACCGGAGCTGAGTTTATTGTCTGTGGTGGTCGACGACGTTGTGTGGAAAGTTGTTACGGCGTTCGAGTCGGTGGCCTTGGTCTCCATGCTCTGTTTCTTCTTCCTCTTTTGTGGCTGCACCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.9

Weight (kDa)

7.76

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26790
prunus_persica Prupe.6G310900_v2.0.a1 Prupe.6G311000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0457471
rosa_roxburghii Rroxscaffold_6G00421850
rosa_wichuraiana Rw3G006940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 79, 111
AciI CCGC 1 cut(s) 16
AclWI GGATC 2 cut(s) 25, 58
AcoI YGGCCR 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 1 cut(s) 57
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 2 cut(s) 25, 58
AoxI GGCC 2 cut(s) 26, 153
ApeKI GCWGC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 205
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 59, 156
BsaWI WCCGGW 1 cut(s) 82
BseDI CCNNGG 2 cut(s) 59, 156
BseMII CTCAG 2 cut(s) 59, 80
BseXI GCAGC 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 28, 155
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 166
BsnI GGCC 2 cut(s) 28, 155
Bso31I GGTCTC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 30, 50
BspACI CCGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 28, 155
BspCNI CTCAG 2 cut(s) 60, 81
BspPI GGATC 2 cut(s) 25, 58
BspTNI GGTCTC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 59, 156
BssMI GATC 2 cut(s) 30, 50
BssNI GRCGYC 1 cut(s) 76
BssT1I CCWWGG 2 cut(s) 59, 156
Bst4CI ACNGT 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 68, 89
BstKTI GATC 2 cut(s) 33, 53
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 30, 50
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 2 cut(s) 28, 155
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 166
CviJI RGCY 5 cut(s) 28, 67, 88, 155, 195
CviKI_1 RGCY 5 cut(s) 28, 67, 88, 155, 195
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 2 cut(s) 68, 89
DpnI GATC 2 cut(s) 32, 52
DpnII GATC 2 cut(s) 30, 50
EaeI YGGCCR 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 59, 156
Eco31I GGTCTC 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 59, 156
ErhI CCWWGG 2 cut(s) 59, 156
FaeI CATG 1 cut(s) 169
FaiI YATR 1 cut(s) 167
FatI CATG 1 cut(s) 165
FblI GTMKAC 2 cut(s) 79, 111
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 205
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 2 cut(s) 28, 155
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 2 cut(s) 80, 112
HindII GTYRAC 2 cut(s) 80, 112
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 2 cut(s) 80, 112
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 2 cut(s) 80, 112
Hpy99I CGWCG 3 cut(s) 81, 116, 119
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 68, 89
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 30, 50
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 4, 33, 96
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 1 cut(s) 205
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 32, 52
MboI GATC 2 cut(s) 30, 50
MboII GAAGA 2 cut(s) 169, 172
MflI RGATCY 1 cut(s) 50
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 2 cut(s) 30, 50
NlaIII CATG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SalI GTCGAC 2 cut(s) 78, 110
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 30, 50
SchI GAGTC 1 cut(s) 155
SetI ASST 3 cut(s) 65, 90, 120
SgeI CNNG 7 cut(s) 31, 60, 72, 95, 157, 169, 178
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 205
StyI CCWWGG 2 cut(s) 59, 156
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 120
TaqI TCGA 3 cut(s) 79, 111, 144
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 33
XmiI GTMKAC 2 cut(s) 79, 111
XspI CTAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.