Prupe.6G310900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0020204
Physical Location & Seq
Forward (+)
27853993 .. 27854588
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G310900.1

Sequence Viewer

Length: 195 bp
ATGTCCTGGTGGCGGTCCGCGTCAGCATTCAGGTCGCCGATGGGGTGGGCCCCGCGGAGCCTGCTGAGGTGGTGGCCGGAGCTGAGCCTGTCGATCGTGGACGACGTCGTTTGGCCGCTGGTAACGGCGTTCGAGTCCGTGGCCTTGGTCTCGATGCTCTTCTTTTTCTTCGTCTTCTGCGGATGCACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.42

Weight (kDa)

5.97

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26790
prunus_persica Prupe.6G310900_v2.0.a1 Prupe.6G311000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0457471
rosa_roxburghii Rroxscaffold_6G00421850
rosa_wichuraiana Rw3G006940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccII CGCG 2 cut(s) 20, 55
AciI CCGC 6 cut(s) 13, 18, 53, 55, 116, 180
AcoI YGGCCR 2 cut(s) 74, 113
AcyI GRCGYC 1 cut(s) 105
AdeI CACNNNGTG 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 12
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 4 cut(s) 48, 74, 113, 141
ApaI GGGCCC 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 15, 48, 49
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 154
BisI GCNGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 3 cut(s) 15, 48, 49
BmiI GGNNCC 3 cut(s) 50, 51, 59
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 2 cut(s) 144, 173
BpiI GAAGAC 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 53, 138, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 53, 138, 144
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 56, 74
BseSI GKGCMC 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 20, 55
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 4 cut(s) 50, 76, 115, 143
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 4 cut(s) 50, 76, 115, 143
Bso31I GGTCTC 1 cut(s) 154
Bsp120I GGGCCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 93
Bsp1720I GCTNAGC 1 cut(s) 83
BspACI CCGC 6 cut(s) 13, 18, 53, 55, 116, 180
BspANI GGCC 4 cut(s) 50, 76, 115, 143
BspCNI CTCAG 2 cut(s) 57, 75
BspFNI CGCG 2 cut(s) 20, 55
BspLI GGNNCC 3 cut(s) 50, 51, 59
BspQI GCTCTTC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 53, 138, 144
BssMI GATC 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 65, 83
BstDSI CCRYGG 2 cut(s) 53, 138
BstF5I GGATG 1 cut(s) 188
BstFNI CGCG 2 cut(s) 20, 55
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 52
BstUI CGCG 2 cut(s) 20, 55
BstV2I GAAGAC 1 cut(s) 166
BsuRI GGCC 4 cut(s) 50, 76, 115, 143
BtgI CCRYGG 2 cut(s) 53, 138
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 15, 48, 49
Cfr42I CCGCGG 1 cut(s) 56
CpoI CGGWCCG 1 cut(s) 15
CseI GACGC 1 cut(s) 9
CspI CGGWCCG 1 cut(s) 15
CviJI RGCY 7 cut(s) 50, 60, 76, 82, 87, 115, 143
CviKI_1 RGCY 7 cut(s) 50, 60, 76, 82, 87, 115, 143
DdeI CTNAG 2 cut(s) 65, 83
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DraIII CACNNNGTG 1 cut(s) 192
EaeI YGGCCR 2 cut(s) 74, 113
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 144
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 4 cut(s) 50, 76, 115, 143
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 105
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 2 cut(s) 107, 110
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 65, 83
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
KspI CCGCGG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 93
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 57, 79
LpnPI CCDG 6 cut(s) 16, 19, 74, 90, 101, 104
LweI GCATC 2 cut(s) 144, 173
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 3 cut(s) 151, 160, 166
MhlI GDGCHC 1 cut(s) 52
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 60
MspA1I CMGCKG 2 cut(s) 55, 118
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 2 cut(s) 20, 55
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 93
NlaIV GGNNCC 3 cut(s) 50, 51, 59
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 117
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 50, 51, 59
PspOMI GGGCCC 1 cut(s) 48
PspPI GGNCC 3 cut(s) 15, 48, 49
PsyI GACNNNGTC 1 cut(s) 104
PvuI CGATCG 1 cut(s) 96
Rsr2I CGGWCCG 1 cut(s) 15
RsrII CGGWCCG 1 cut(s) 15
SacII CCGCGG 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 3 cut(s) 15, 48, 49
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 52
SetI ASST 4 cut(s) 35, 71, 84, 108
SfaNI GCATC 2 cut(s) 144, 173
Sfr303I CCGCGG 1 cut(s) 56
SgrBI CCGCGG 1 cut(s) 56
SinI GGWCC 1 cut(s) 15
SsiI CCGC 6 cut(s) 13, 18, 53, 55, 116, 180
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 92, 132, 152
TauI GCSGC 1 cut(s) 118
TscAI CASTG 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 15
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.