Rroxscaffold_6G00421850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0020204
Physical Location & Seq
Forward (+)
42887836 .. 42888024
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421850.1

Sequence Viewer

Length: 189 bp
ATGTCCTGGTGGCGGTTCGCGTCAGAATTCCGGTCATCGATGGGGTGGACCCCGCGGAGTTGGTTGCCGGAGCTGAGCCTGTCGATCGTGGTGGACGACGTCGTCTGGTCGATGGTCACAGCCGTGGAGTCGGTAGCCTTGGTCTCGATGCTCTTCTTCTTCTTCGTCTTCTGCGGCTGCACCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.16

Weight (kDa)

4.51

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26790
prunus_persica Prupe.6G310900_v2.0.a1 Prupe.6G311000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0457471
rosa_roxburghii Rroxscaffold_6G00421850
rosa_wichuraiana Rw3G006940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 102
AccII CGCG 2 cut(s) 20, 55
AciI CCGC 4 cut(s) 13, 53, 55, 174
AcsI RAATTY 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 12
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 48
AvaII GGWCC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 164
BccI CCATC 2 cut(s) 34, 106
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 148
BisI GCNGC 2 cut(s) 175, 178
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 2 cut(s) 176, 179
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 160
Bpu1102I GCTNAGC 1 cut(s) 74
Bsa29I ATCGAT 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 53, 123, 138
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 7
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 53, 123, 138
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 163
Bsh1236I CGCG 2 cut(s) 20, 55
Bsh1285I CGRYCG 1 cut(s) 87
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 87
BsiSI CCGG 2 cut(s) 31, 68
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 4 cut(s) 13, 53, 55, 174
BspCNI CTCAG 1 cut(s) 66
BspDI ATCGAT 1 cut(s) 38
BspFNI CGCG 2 cut(s) 20, 55
BspLI GGNNCC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 148
BssECI CCNNGG 3 cut(s) 53, 123, 138
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 2 cut(s) 53, 123
BstFNI CGCG 2 cut(s) 20, 55
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 87
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstUI CGCG 2 cut(s) 20, 55
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 38
BtgI CCRYGG 2 cut(s) 53, 123
Cfr13I GGNCC 1 cut(s) 48
Cfr42I CCGCGG 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 9
CviJI RGCY 5 cut(s) 73, 78, 122, 137, 177
CviKI_1 RGCY 5 cut(s) 73, 78, 122, 137, 177
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 175, 178
Fsp4HI GCNGC 2 cut(s) 175, 178
GluI GCNGC 2 cut(s) 175, 178
HapII CCGG 2 cut(s) 31, 68
HgaI GACGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 99
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 31, 68
Hpy166II GTNNAC 2 cut(s) 48, 94
Hpy188I TCNGA 2 cut(s) 25, 188
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 48, 94
Hpy99I CGWCG 2 cut(s) 101, 104
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 99
KspI CCGCGG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 19, 44, 81, 91, 92
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 138
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 5 cut(s) 145, 148, 151, 154, 160
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 31, 68
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 2 cut(s) 20, 55
NdeII GATC 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PflFI GACNNNGTC 2 cut(s) 98, 101
PkrI GCNGC 2 cut(s) 176, 179
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 48
PsyI GACNNNGTC 2 cut(s) 98, 101
PvuI CGATCG 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 158
SatI GCNGC 2 cut(s) 175, 178
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 7
SetI ASST 2 cut(s) 75, 102
SfaNI GCATC 1 cut(s) 138
Sfr303I CCGCGG 1 cut(s) 56
SgrBI CCGCGG 1 cut(s) 56
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 1 cut(s) 26
SsiI CCGC 4 cut(s) 13, 53, 55, 174
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 102
TaqI TCGA 4 cut(s) 38, 83, 110, 146
TasI AATT 1 cut(s) 26
TauI GCSGC 1 cut(s) 177
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 115
Tth111I GACNNNGTC 2 cut(s) 98, 101
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 1 cut(s) 26
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.